Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003051

Physical Location & Seq

Genomic Coordinates Forward (+)

34867418 .. 34869445

Gene Structure 2028 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g45392.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCCCTCGCCGGCATCTACCCTTACCACCAGCAATGGGCCCCGACGGCAGCCCCTCCTCCTCCCCCAGCCGTCGTCGTCGCCACGCCTCCACCTTCTCCTCACCACCTCGTCGACAACCCCAACCGGCCTGCCAACGACGAGGTTCGCACCATCTTCATCGTCGGTCTTCCCGAAGATGTCAAGGAGAGAGAGGTACAGAACCTCCTGAGATGGCTTCCCGACTACGAGGTCTTTCAGGTCAACTACAAAGGCGAGAAGCCGATGAGCTTCCGTCGCCCCGCTCAACAGAGTATGGTTTTCGATATGGAATCGAAGACGGTGTTGCATACGGAGATGGCGAAGAAGAATCTGTTTGTGAAAAGAGATCTCTTGGCAAAAACCAGACCAAAGAGTTGTATTGCAGACAAAACAAGAAGAGAATTCCACCATTGCCGGGAAACCAGTAATCTAAAGCCAGAGAAAAAGATAGATGAAAGCGACGGTAGATGGGACAGTCTCCACGCCGGCCAGTCTACTCGGTGTTTCTGTAATTCTGAATATTGTTACTACTCTCTTTCCCAGAGCCACAGGCACGTGAAAGTGTATATAGCTACTGCTACTATTAGGGCATCACATAGAACTCGCGGCCTTCGGAAAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2854 UMP1

Protein Analysis

215

Amino Acids

24.66

Weight (kDa)

9.47

Isoelectric Point (pI)

56.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21215 AT3G21215 AT3G21215 AT3G21215
fragaria_vesca	FvH4_3g14953 FvH4_3g16432 FvH4_4g15800 FvH4_4g32761 FvH4_5g34521 FvH4_6g16241 FvH4_6g37450 FvH4_6g45392 FvH4_7g15921 FvH4_7g31684
malus_domestica	MD09G1158000.v1.1 MD17G1144000.v1.1
prunus_persica	Prupe.3G168000_v2.0.a1
pyrus_communis	pycom09g07680 pycom17g13730
rosa_chinensis	RchiOBHm_Chr2g0150271 RchiOBHm_Chr2g0150291
rosa_laevigata	RLG00000020483
rosa_multiflora	Rmu_sc0001169.1_g000003 Rmu_sc0020705.1_g000001 Rmu_sc0024000.1_g000001 Rmu_sc0038093.1_g000001 Rmu_sc0040821.1_g000001 Rmu_ssc0000020.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097320 Rroxscaffold_2G00097330
rosa_rugosa	Rorug02G0420200 Rorug02G0420300
rosa_samantha	Rh2AG479200 Rh2BG491500 Rh2CG465400 Rh2DG500300
rosa_wichuraiana	Rw2G038980 Rw2G039110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	230
AccBSI	CCGCTC	1 cut(s)	284
AccI	GTMKAC	2 cut(s)	114, 515
AccII	CGCG	1 cut(s)	627
AciI	CCGC	2 cut(s)	282, 627
AcoI	YGGCCR	1 cut(s)	508
AcsI	RAATTY	1 cut(s)	422
AcvI	CACGTG	1 cut(s)	577
AfaI	GTAC	1 cut(s)	198
AfiI	CCNNNNNNNGG	2 cut(s)	37, 436
AluBI	AGCT	3 cut(s)	270, 593, 642
AluI	AGCT	3 cut(s)	270, 593, 642
Alw26I	GTCTC	1 cut(s)	503
AoxI	GGCC	5 cut(s)	3, 39, 128, 508, 628
ApaI	GGGCCC	1 cut(s)	43
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	1 cut(s)	422
AspS9I	GGNCC	3 cut(s)	4, 39, 40
AsuC2I	CCSGG	1 cut(s)	437
AsuHPI	GGTGA	1 cut(s)	95
BaeGI	GKGCMC	1 cut(s)	43
BanII	GRGCYC	1 cut(s)	43
BbrPI	CACGTG	1 cut(s)	577
BbsI	GAAGAC	2 cut(s)	161, 323
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	4 cut(s)	161, 207, 331, 483
BceAI	ACGGC	2 cut(s)	56, 63
BcnI	CCSGG	1 cut(s)	437
BcoDI	GTCTC	1 cut(s)	503
BglI	GCCNNNNNGGC	1 cut(s)	47
BglII	AGATCT	1 cut(s)	367
BisI	GCNGC	2 cut(s)	51, 628
BlsI	GCNGC	2 cut(s)	52, 629
Bme1390I	CCNGG	1 cut(s)	437
BmgT120I	GGNCC	3 cut(s)	4, 39, 40
BmiI	GGNNCC	2 cut(s)	41, 42
BmrFI	CCNGG	1 cut(s)	437
BmsI	GCATC	2 cut(s)	24, 620
BpiI	GAAGAC	2 cut(s)	161, 323
BpuMI	CCSGG	1 cut(s)	437
BsaAI	YACGTR	1 cut(s)	577
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 436
Bse118I	RCCGGY	3 cut(s)	11, 126, 506
Bse1I	ACTGG	2 cut(s)	444, 511
Bse3DI	GCAATG	2 cut(s)	41, 430
BseLI	CCNNNNNNNGG	2 cut(s)	37, 436
BseMI	GCAATG	2 cut(s)	41, 430
BseMII	CTCAG	1 cut(s)	200
BseNI	ACTGG	2 cut(s)	444, 511
BseRI	GAGGAG	3 cut(s)	48, 51, 90
BseSI	GKGCMC	1 cut(s)	43
BseXI	GCAGC	1 cut(s)	62
BseYI	CCCAGC	1 cut(s)	67
Bsh1236I	CGCG	1 cut(s)	627
BshFI	GGCC	5 cut(s)	5, 41, 130, 510, 630
BsiSI	CCGG	4 cut(s)	12, 127, 436, 507
BslFI	GGGAC	1 cut(s)	506
BslI	CCNNNNNNNGG	2 cut(s)	37, 436
BsmAI	GTCTC	1 cut(s)	503
BsmFI	GGGAC	1 cut(s)	506
BsnI	GGCC	5 cut(s)	5, 41, 130, 510, 630
Bsp120I	GGGCCC	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp143I	GATC	1 cut(s)	367
BspACI	CCGC	2 cut(s)	282, 627
BspANI	GGCC	5 cut(s)	5, 41, 130, 510, 630
BspCNI	CTCAG	1 cut(s)	201
BspFNI	CGCG	1 cut(s)	627
BspLI	GGNNCC	2 cut(s)	41, 42
BsrBI	CCGCTC	1 cut(s)	284
BsrDI	GCAATG	2 cut(s)	41, 430
BsrFI	RCCGGY	3 cut(s)	11, 126, 506
BsrI	ACTGG	2 cut(s)	444, 511
BssAI	RCCGGY	3 cut(s)	11, 126, 506
BssMI	GATC	1 cut(s)	367
Bst4CI	ACNGT	3 cut(s)	322, 485, 497
Bst6I	CTCTTC	1 cut(s)	412
BstBAI	YACGTR	1 cut(s)	577
BstC8I	GCNNGC	3 cut(s)	13, 132, 508
BstDEI	CTNAG	1 cut(s)	209
BstFNI	CGCG	1 cut(s)	627
BstKTI	GATC	1 cut(s)	370
BstMAI	GTCTC	1 cut(s)	503
BstMBI	GATC	1 cut(s)	367
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 276
BstSCI	CCNGG	1 cut(s)	435
BstSLI	GKGCMC	1 cut(s)	43
BstUI	CGCG	1 cut(s)	627
BstV1I	GCAGC	1 cut(s)	62
BstV2I	GAAGAC	2 cut(s)	161, 323
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
BsuRI	GGCC	5 cut(s)	5, 41, 130, 510, 630
Cac8I	GCNNGC	3 cut(s)	13, 132, 508
Cfr10I	RCCGGY	3 cut(s)	11, 126, 506
Cfr13I	GGNCC	3 cut(s)	4, 39, 40
Csp6I	GTAC	1 cut(s)	197
CviQI	GTAC	1 cut(s)	197
DdeI	CTNAG	1 cut(s)	209
DpnI	GATC	1 cut(s)	369
DpnII	GATC	1 cut(s)	367
DrdI	GACNNNNNNGTC	1 cut(s)	230
DseDI	GACNNNNNNGTC	1 cut(s)	230
EaeI	YGGCCR	1 cut(s)	508
Eam1104I	CTCTTC	1 cut(s)	412
EarI	CTCTTC	1 cut(s)	412
Eco24I	GRGCYC	1 cut(s)	43
Eco72I	CACGTG	1 cut(s)	577
EcoO109I	RGGNCCY	1 cut(s)	40
EcoRI	GAATTC	1 cut(s)	422
EcoT38I	GRGCYC	1 cut(s)	43
FaiI	YATR	6 cut(s)	296, 308, 330, 588, 590, 618
FaqI	GGGAC	1 cut(s)	506
FauI	CCCGC	1 cut(s)	289
FblI	GTMKAC	2 cut(s)	114, 515
Fnu4HI	GCNGC	2 cut(s)	51, 628
FriOI	GRGCYC	1 cut(s)	43
Fsp4HI	GCNGC	2 cut(s)	51, 628
GluI	GCNGC	2 cut(s)	51, 628
GsaI	CCCAGC	1 cut(s)	71
HaeIII	GGCC	5 cut(s)	5, 41, 130, 510, 630
HapII	CCGG	4 cut(s)	12, 127, 436, 507
HincII	GTYRAC	2 cut(s)	115, 244
HindII	GTYRAC	2 cut(s)	115, 244
HinfI	GANTC	2 cut(s)	311, 349
HpaII	CCGG	4 cut(s)	12, 127, 436, 507
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	3 cut(s)	115, 244, 516
Hpy188I	TCNGA	2 cut(s)	538, 636
Hpy188III	TCNNGA	3 cut(s)	173, 208, 221
Hpy8I	GTNNAC	3 cut(s)	115, 244, 516
Hpy99I	CGWCG	9 cut(s)	49, 77, 80, 83, 116, 143, 167, 279, 485
HpyAV	CCTTC	2 cut(s)	105, 641
HpyCH4III	ACNGT	3 cut(s)	322, 485, 497
HpyCH4IV	ACGT	1 cut(s)	576
HpyCH4V	TGCA	2 cut(s)	328, 404
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 276
HpyF3I	CTNAG	1 cut(s)	209
HpySE526I	ACGT	1 cut(s)	576
KroI	GCCGGC	2 cut(s)	11, 506
KroNI	GCCGGC	2 cut(s)	13, 508
Kzo9I	GATC	1 cut(s)	367
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	2 cut(s)	24, 620
MaeII	ACGT	1 cut(s)	576
MaeIII	GTNAC	1 cut(s)	545
MalI	GATC	1 cut(s)	369
MbiI	CCGCTC	1 cut(s)	284
MboI	GATC	1 cut(s)	367
MboII	GAAGA	7 cut(s)	148, 161, 188, 328, 355, 358, 429
MflI	RGATCY	1 cut(s)	367
MhlI	GDGCHC	1 cut(s)	43
MluCI	AATT	2 cut(s)	422, 532
MroNI	GCCGGC	2 cut(s)	11, 506
MspI	CCGG	4 cut(s)	12, 127, 436, 507
MspR9I	CCNGG	1 cut(s)	437
MvnI	CGCG	1 cut(s)	627
MwoI	GCNNNNNNNGC	2 cut(s)	47, 276
NaeI	GCCGGC	2 cut(s)	13, 508
NciI	CCSGG	1 cut(s)	437
NdeII	GATC	1 cut(s)	367
NgoMIV	GCCGGC	2 cut(s)	11, 506
NlaIV	GGNNCC	2 cut(s)	41, 42
PcsI	WCGNNNNNNNCGW	2 cut(s)	171, 338
PdiI	GCCGGC	2 cut(s)	13, 508
PfeI	GAWTC	2 cut(s)	311, 349
PkrI	GCNGC	2 cut(s)	52, 629
PmaCI	CACGTG	1 cut(s)	577
PmlI	CACGTG	1 cut(s)	577
Ppu21I	YACGTR	1 cut(s)	577
PspCI	CACGTG	1 cut(s)	577
PspFI	CCCAGC	1 cut(s)	67
PspN4I	GGNNCC	2 cut(s)	41, 42
PspOMI	GGGCCC	1 cut(s)	39
PspPI	GGNCC	3 cut(s)	4, 39, 40
PsuI	RGATCY	1 cut(s)	367
RsaI	GTAC	1 cut(s)	198
RsaNI	GTAC	1 cut(s)	197
SalI	GTCGAC	1 cut(s)	113
SatI	GCNGC	2 cut(s)	51, 628
Sau3AI	GATC	1 cut(s)	367
Sau96I	GGNCC	3 cut(s)	4, 39, 40
ScrFI	CCNGG	1 cut(s)	437
SduI	GDGCHC	1 cut(s)	43
SfaNI	GCATC	2 cut(s)	24, 620
Sse9I	AATT	2 cut(s)	422, 532
SsiI	CCGC	2 cut(s)	282, 627
SspI	AATATT	1 cut(s)	542
StyD4I	CCNGG	1 cut(s)	435
TaaI	ACNGT	3 cut(s)	322, 485, 497
TaiI	ACGT	1 cut(s)	579
TaqI	TCGA	3 cut(s)	114, 303, 314
TaqII	GACCGA	1 cut(s)	155
TasI	AATT	2 cut(s)	422, 532
TauI	GCSGC	1 cut(s)	630
TfiI	GAWTC	2 cut(s)	311, 349
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	2 cut(s)	148, 489
TspGWI	ACGGA	2 cut(s)	263, 347
XapI	RAATTY	1 cut(s)	422
XmiI	GTMKAC	2 cut(s)	114, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.