Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003051

Physical Location & Seq

Genomic Coordinates Reverse (-)

13723794 .. 13724320

Gene Structure 527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g15921.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGACCGGCGTCGACATCCACCCCTACCACCAGCAATGGGCCCTGGCGGTAGCCCCTCATCCTCCCCCGGCCGTCGTCGCCGCTGCGCCTCCACCTCCTCCTCACCACCTCGTCGACAACCCCAACCGGCCCGCTAACGACAAGGTCCGCACCATCTTCATCACCGGTCTTCCCGAAGATGTCAAGGAGAGGGAGATACAGAACCTCCTGAGATGGCTTCTCGGCTACGAGGTCTCTCAGGTCAACTACAAAGGCGAGAAGCCGATGAGCTTTGCGCTCTTCGCCACCGCTCAGCAGGCTATTGCTGCCAAAGACGCTTTTCAGAGTATGGTTTTCGATACGGAATCAAAGGCGATGTTGCATACGGAGATGGCGAAGAAGAATCTGTTTGTGAAAAGAGGTGAGAATGCTACTGAGTTTTTGGTCTGGGTTCGAAAGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009790 GO:0009887 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0030510 GO:0030514 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035239 GO:0035295 GO:0042127 GO:0042802 GO:0042803 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0046983 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048660 GO:0048661 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051147 GO:0051148 GO:0051150 GO:0051151 GO:0051171 GO:0051252 GO:0055123 GO:0060255 GO:0065007 GO:0080090 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

148

Amino Acids

16.58

Weight (kDa)

8.93

Isoelectric Point (pI)

44.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21215 AT3G21215 AT3G21215 AT3G21215
fragaria_vesca	FvH4_3g14953 FvH4_3g16432 FvH4_4g15800 FvH4_4g32761 FvH4_5g34521 FvH4_6g16241 FvH4_6g37450 FvH4_6g45392 FvH4_7g15921 FvH4_7g31684
malus_domestica	MD09G1158000.v1.1 MD17G1144000.v1.1
prunus_persica	Prupe.3G168000_v2.0.a1
pyrus_communis	pycom09g07680 pycom17g13730
rosa_chinensis	RchiOBHm_Chr2g0150271 RchiOBHm_Chr2g0150291
rosa_laevigata	RLG00000020483
rosa_multiflora	Rmu_sc0001169.1_g000003 Rmu_sc0020705.1_g000001 Rmu_sc0024000.1_g000001 Rmu_sc0038093.1_g000001 Rmu_sc0040821.1_g000001 Rmu_ssc0000020.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097320 Rroxscaffold_2G00097330
rosa_rugosa	Rorug02G0420200 Rorug02G0420300
rosa_samantha	Rh2AG479200 Rh2BG491500 Rh2CG465400 Rh2DG500300
rosa_wichuraiana	Rw2G038980 Rw2G039110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	290
AccI	GTMKAC	2 cut(s)	12, 114
AciI	CCGC	5 cut(s)	47, 81, 132, 148, 288
AcoI	YGGCCR	1 cut(s)	69
AcyI	GRCGYC	1 cut(s)	9
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgeI	ACCGGT	1 cut(s)	164
AjnI	CCWGG	1 cut(s)	42
AluBI	AGCT	1 cut(s)	270
AluI	AGCT	1 cut(s)	270
Alw26I	GTCTC	1 cut(s)	238
AoxI	GGCC	3 cut(s)	39, 69, 128
ApaI	GGGCCC	1 cut(s)	43
ApeKI	GCWGC	2 cut(s)	83, 305
AsiGI	ACCGGT	1 cut(s)	164
AspLEI	GCGC	2 cut(s)	88, 277
AspS9I	GGNCC	4 cut(s)	39, 40, 129, 145
AsuC2I	CCSGG	1 cut(s)	68
AsuHPI	GGTGA	3 cut(s)	95, 154, 413
AsuII	TTCGAA	1 cut(s)	433
AvaII	GGWCC	1 cut(s)	145
BaeGI	GKGCMC	1 cut(s)	43
BanII	GRGCYC	1 cut(s)	43
BbsI	GAAGAC	1 cut(s)	161
BbvI	GCAGC	2 cut(s)	70, 292
BccI	CCATC	3 cut(s)	161, 207, 364
BceAI	ACGGC	1 cut(s)	56
BciT130I	CCWGG	1 cut(s)	44
BcnI	CCSGG	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	238
BisI	GCNGC	3 cut(s)	81, 84, 306
BlpI	GCTNAGC	1 cut(s)	291
BlsI	GCNGC	3 cut(s)	82, 85, 307
Bme1390I	CCNGG	2 cut(s)	44, 68
Bme18I	GGWCC	1 cut(s)	145
BmgT120I	GGNCC	4 cut(s)	39, 40, 129, 145
BmiI	GGNNCC	1 cut(s)	41
BmrFI	CCNGG	2 cut(s)	44, 68
BoxI	GACNNNNGTC	1 cut(s)	8
BpiI	GAAGAC	1 cut(s)	161
Bpu1102I	GCTNAGC	1 cut(s)	291
Bpu14I	TTCGAA	1 cut(s)	433
BpuMI	CCSGG	1 cut(s)	68
BsaHI	GRCGYC	1 cut(s)	9
BsaI	GGTCTC	1 cut(s)	238
BsaJI	CCNNGG	2 cut(s)	42, 66
BsaWI	WCCGGW	1 cut(s)	164
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse118I	RCCGGY	3 cut(s)	5, 126, 164
Bse3DI	GCAATG	1 cut(s)	41
BseBI	CCWGG	1 cut(s)	44
BseDI	CCNNGG	2 cut(s)	42, 66
BseGI	GGATG	2 cut(s)	15, 58
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMI	GCAATG	1 cut(s)	41
BseMII	CTCAG	4 cut(s)	200, 251, 305, 405
BseRI	GAGGAG	2 cut(s)	87, 90
BseSI	GKGCMC	1 cut(s)	43
BseX3I	CGGCCG	1 cut(s)	69
BseXI	GCAGC	2 cut(s)	70, 292
Bsh1285I	CGRYCG	1 cut(s)	72
BshFI	GGCC	3 cut(s)	41, 71, 130
BshTI	ACCGGT	1 cut(s)	164
BsiEI	CGRYCG	1 cut(s)	72
BsiSI	CCGG	4 cut(s)	6, 68, 127, 165
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmAI	GTCTC	1 cut(s)	238
BsmI	GAATGC	1 cut(s)	412
BsnI	GGCC	3 cut(s)	41, 71, 130
Bso31I	GGTCTC	1 cut(s)	238
Bsp119I	TTCGAA	1 cut(s)	433
Bsp120I	GGGCCC	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp1720I	GCTNAGC	1 cut(s)	291
BspACI	CCGC	5 cut(s)	47, 81, 132, 148, 288
BspANI	GGCC	3 cut(s)	41, 71, 130
BspCNI	CTCAG	4 cut(s)	201, 250, 304, 406
BspLI	GGNNCC	1 cut(s)	41
BspQI	GCTCTTC	1 cut(s)	284
BspT104I	TTCGAA	1 cut(s)	433
BspTNI	GGTCTC	1 cut(s)	238
BsrBI	CCGCTC	1 cut(s)	290
BsrDI	GCAATG	1 cut(s)	41
BsrFI	RCCGGY	3 cut(s)	5, 126, 164
BssAI	RCCGGY	3 cut(s)	5, 126, 164
BssECI	CCNNGG	2 cut(s)	42, 66
BssNI	GRCGYC	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	44
Bst6I	CTCTTC	1 cut(s)	284
BstACI	GRCGYC	1 cut(s)	9
BstBI	TTCGAA	1 cut(s)	433
BstC8I	GCNNGC	2 cut(s)	132, 297
BstDEI	CTNAG	4 cut(s)	209, 237, 291, 414
BstF5I	GGATG	2 cut(s)	15, 58
BstHHI	GCGC	2 cut(s)	88, 277
BstMAI	GTCTC	1 cut(s)	238
BstMCI	CGRYCG	1 cut(s)	72
BstMWI	GCNNNNNNNGC	5 cut(s)	77, 281, 296, 305, 314
BstNI	CCWGG	1 cut(s)	44
BstPAI	GACNNNNGTC	1 cut(s)	8
BstSCI	CCNGG	2 cut(s)	42, 66
BstSLI	GKGCMC	1 cut(s)	43
BstV1I	GCAGC	2 cut(s)	70, 292
BstV2I	GAAGAC	1 cut(s)	161
BstZI	CGGCCG	1 cut(s)	69
BsuRI	GGCC	3 cut(s)	41, 71, 130
BtgZI	GCGATG	1 cut(s)	368
BtsCI	GGATG	2 cut(s)	15, 58
Cac8I	GCNNGC	2 cut(s)	132, 297
CfoI	GCGC	2 cut(s)	88, 277
Cfr10I	RCCGGY	3 cut(s)	5, 126, 164
Cfr13I	GGNCC	4 cut(s)	39, 40, 129, 145
CseI	GACGC	1 cut(s)	323
CspAI	ACCGGT	1 cut(s)	164
CviJI	RGCY	9 cut(s)	41, 53, 71, 130, 217, 225, 262, 270, 299
CviKI_1	RGCY	9 cut(s)	41, 53, 71, 130, 217, 225, 262, 270, 299
DdeI	CTNAG	4 cut(s)	209, 237, 291, 414
EaeI	YGGCCR	1 cut(s)	69
EagI	CGGCCG	1 cut(s)	69
Eam1104I	CTCTTC	1 cut(s)	284
EarI	CTCTTC	1 cut(s)	284
EclXI	CGGCCG	1 cut(s)	69
Eco24I	GRGCYC	1 cut(s)	43
Eco31I	GGTCTC	1 cut(s)	238
Eco47I	GGWCC	1 cut(s)	145
Eco52I	CGGCCG	1 cut(s)	69
EcoO109I	RGGNCCY	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	42
EcoT38I	GRGCYC	1 cut(s)	43
FaiI	YATR	2 cut(s)	329, 363
FauI	CCCGC	1 cut(s)	139
FblI	GTMKAC	2 cut(s)	12, 114
Fnu4HI	GCNGC	3 cut(s)	81, 84, 306
FokI	GGATG	2 cut(s)	2, 45
FriOI	GRGCYC	1 cut(s)	43
Fsp4HI	GCNGC	3 cut(s)	81, 84, 306
GlaI	GCGC	2 cut(s)	87, 276
GluI	GCNGC	3 cut(s)	81, 84, 306
HaeIII	GGCC	3 cut(s)	41, 71, 130
HapII	CCGG	4 cut(s)	6, 68, 127, 165
HgaI	GACGC	1 cut(s)	323
HhaI	GCGC	2 cut(s)	88, 277
Hin1I	GRCGYC	1 cut(s)	9
Hin6I	GCGC	2 cut(s)	86, 275
HinP1I	GCGC	2 cut(s)	86, 275
HincII	GTYRAC	3 cut(s)	13, 115, 244
HindII	GTYRAC	3 cut(s)	13, 115, 244
HinfI	GANTC	2 cut(s)	344, 382
HpaII	CCGG	4 cut(s)	6, 68, 127, 165
HphI	GGTGA	3 cut(s)	95, 154, 413
Hpy166II	GTNNAC	3 cut(s)	13, 115, 244
Hpy188I	TCNGA	1 cut(s)	324
Hpy188III	TCNNGA	2 cut(s)	173, 208
Hpy8I	GTNNAC	3 cut(s)	13, 115, 244
Hpy99I	CGWCG	4 cut(s)	14, 77, 80, 116
HpyCH4V	TGCA	1 cut(s)	361
HpyF10VI	GCNNNNNNNGC	5 cut(s)	77, 281, 296, 305, 314
HpyF3I	CTNAG	4 cut(s)	209, 237, 291, 414
Hsp92I	GRCGYC	1 cut(s)	9
HspAI	GCGC	2 cut(s)	86, 275
LguI	GCTCTTC	1 cut(s)	284
Lsp1109I	GCAGC	2 cut(s)	70, 292
MbiI	CCGCTC	1 cut(s)	290
MboII	GAAGA	6 cut(s)	148, 161, 188, 271, 388, 391
MhlI	GDGCHC	1 cut(s)	43
MseI	TTAA	1 cut(s)	442
MspA1I	CMGCKG	1 cut(s)	83
MspI	CCGG	4 cut(s)	6, 68, 127, 165
MspR9I	CCNGG	2 cut(s)	44, 68
Mva1269I	GAATGC	1 cut(s)	412
MvaI	CCWGG	1 cut(s)	44
MwoI	GCNNNNNNNGC	5 cut(s)	77, 281, 296, 305, 314
NciI	CCSGG	1 cut(s)	68
NlaIV	GGNNCC	1 cut(s)	41
NmeAIII	GCCGAG	1 cut(s)	201
NspV	TTCGAA	1 cut(s)	433
PciSI	GCTCTTC	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	1 cut(s)	371
PctI	GAATGC	1 cut(s)	412
PfeI	GAWTC	2 cut(s)	344, 382
PflFI	GACNNNGTC	1 cut(s)	143
PinAI	ACCGGT	1 cut(s)	164
PkrI	GCNGC	3 cut(s)	82, 85, 307
PshAI	GACNNNNGTC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	42
PspN4I	GGNNCC	1 cut(s)	41
PspOMI	GGGCCC	1 cut(s)	39
PspPI	GGNCC	4 cut(s)	39, 40, 129, 145
PsyI	GACNNNGTC	1 cut(s)	143
SalI	GTCGAC	2 cut(s)	11, 113
SapI	GCTCTTC	1 cut(s)	284
SaqAI	TTAA	1 cut(s)	442
SatI	GCNGC	3 cut(s)	81, 84, 306
Sau96I	GGNCC	4 cut(s)	39, 40, 129, 145
ScrFI	CCNGG	2 cut(s)	44, 68
SduI	GDGCHC	1 cut(s)	43
SetI	ASST	8 cut(s)	97, 111, 147, 207, 234, 243, 272, 403
SfuI	TTCGAA	1 cut(s)	433
SinI	GGWCC	1 cut(s)	145
SsiI	CCGC	5 cut(s)	47, 81, 132, 148, 288
StyD4I	CCNGG	2 cut(s)	42, 66
TaqI	TCGA	4 cut(s)	12, 114, 336, 433
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	2 cut(s)	344, 382
Tru1I	TTAA	1 cut(s)	442
Tru9I	TTAA	1 cut(s)	442
TseI	GCWGC	2 cut(s)	83, 305
TspDTI	ATGAA	1 cut(s)	148
TspGWI	ACGGA	2 cut(s)	356, 380
Tth111I	GACNNNGTC	1 cut(s)	143
VpaK11BI	GGWCC	1 cut(s)	145
XmiI	GTMKAC	2 cut(s)	12, 114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.