Prupe.3G168000_v2.0.a1

U1 small nuclear ribonucleoprotein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
18695771 .. 18701072
5302 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G168000.1

Sequence Viewer

Length: 987 bp
ATGGCCGGCGCTGGGATCCACCCATACCACCAGCAATGGCCTCCGGCAGCCGGTCCTCCGCCGCCTCCTCCGGTAGTCCCCGCTGTCGCTCCTCCTCCTCCTCACTACCTCGTCGACAACCCTAACCGGCCCGCCACCGACGAGGTCCGGACCATTTTCATTACGGGTCTACCCGAGGATGTAAAGGAGAGAGAGATACAGAACCTATTGAGGTGGTTGCCGGGTTACGAGGCTTCCCAGGTCAACCACAAAGGCGAGAAGCCTATGAGTTTTGCTCTCTTTTCCACTGCTCAGCAAGCCATTGCTGCCAAAGACGCCCTTCAGGGAATGATTTTCGATTCGGAGTCAAAGGCGGTGCTGCACACGGAGATGGCAAAGAAGAATCTTTTTGTTAAAAGAGGAATCGTAGCGGATGCAAATGCTTATGATCAAAGTAAACGATTGCGAACTGGTGGTGACTACACGCAGGCTGGTTATAGCAGTCCATCTCCTTTTCATCCTCCTCCACCACCTGTTTGGGGGCCACATGGGTATATGGCTCCACCACCTCCTCCATATGATCCATATGGTGGTTATCCTGTTCCTCCAGTACCAATGCCCCCTTCTGCTCCTGTACCAGCACCTAGTAGTTATGTACCTGTTCTGAATACAAAAGATAACCCACCGTGCAATACCTTATTTATTGGAAATCTTGGAGAGAGCATTAATGAGGAAGAACTGAGGGGCCTTTTCAACTCACAACCTGGATTTAAGCAAATGAAGGTCTTGAGACAAGAAAGGCATACTGTTTGCTTCATTGAGTTTGAAGATGTAAACAGTGCCTCCAATGTACACCACAGTTTGCAGGGTGCTGTTATCCCCAGTTCGGGCTCTGTAGGCATGAGAATACAATATTCGAAGAACCCATTTGGGAAAAGGAAGGATGGGAACCACCCTGGTGCTGTCCCTGCTGCCAATGGAGCTCCACCGGCTATGACATACCAGTAG

Protein Analysis

329

Amino Acids

35.5

Weight (kDa)

7.19

Isoelectric Point (pI)

68.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 569
AccI GTMKAC 2 cut(s) 114, 169
AccIII TCCGGA 1 cut(s) 147
AciI CCGC 6 cut(s) 59, 62, 81, 132, 353, 410
AclWI GGATC 3 cut(s) 10, 23, 554
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 305
AcyI GRCGYC 1 cut(s) 315
AfaI GTAC 4 cut(s) 591, 615, 636, 831
AfiI CCNNNNNNNGG 6 cut(s) 12, 50, 518, 569, 865, 866
AgsI TTSAA 2 cut(s) 733, 806
AjnI CCWGG 3 cut(s) 237, 742, 934
AjuI GAANNNNNNNTTGG 2 cut(s) 586, 618
AleI CACNNNNGTG 1 cut(s) 936
AluBI AGCT 1 cut(s) 962
AluI AGCT 1 cut(s) 962
Alw21I GWGCWC 1 cut(s) 964
Alw26I GTCTC 1 cut(s) 763
AlwI GGATC 3 cut(s) 10, 23, 554
Ama87I CYCGRG 1 cut(s) 173
Aor13HI TCCGGA 1 cut(s) 147
AoxI GGCC 5 cut(s) 3, 38, 128, 521, 724
ApeKI GCWGC 4 cut(s) 47, 305, 358, 950
AseI ATTAAT 1 cut(s) 705
AspLEI GCGC 1 cut(s) 11
AspS9I GGNCC 6 cut(s) 53, 129, 145, 150, 521, 724
AsuC2I CCSGG 1 cut(s) 222
AsuHPI GGTGA 1 cut(s) 467
AsuII TTCGAA 1 cut(s) 896
AvaI CYCGRG 1 cut(s) 173
AvaII GGWCC 3 cut(s) 53, 145, 150
BamHI GGATCC 1 cut(s) 15
BanII GRGCYC 2 cut(s) 872, 964
Bbv12I GWGCWC 1 cut(s) 964
BbvI GCAGC 4 cut(s) 59, 292, 345, 937
BccI CCATC 3 cut(s) 364, 493, 917
BciT130I CCWGG 3 cut(s) 239, 744, 936
BclI TGATCA 1 cut(s) 427
BcnI CCSGG 1 cut(s) 222
BcoDI GTCTC 1 cut(s) 763
BfaI CTAG 1 cut(s) 624
BfmI CTRYAG 1 cut(s) 873
BfoI RGCGCY 1 cut(s) 12
BisI GCNGC 5 cut(s) 48, 62, 306, 359, 951
BlpI GCTNAGC 1 cut(s) 291
BlsI GCNGC 5 cut(s) 49, 63, 307, 360, 952
Bme1390I CCNGG 4 cut(s) 222, 239, 744, 936
Bme18I GGWCC 3 cut(s) 53, 145, 150
BmeT110I CYCGRG 1 cut(s) 173
BmgT120I GGNCC 6 cut(s) 53, 129, 145, 150, 521, 724
BmiI GGNNCC 5 cut(s) 17, 522, 540, 725, 929
BmrFI CCNGG 4 cut(s) 222, 239, 744, 936
BmrI ACTGGG 1 cut(s) 855
BmsI GCATC 1 cut(s) 403
BmuI ACTGGG 1 cut(s) 855
BplI GAGNNNNNCTC 2 cut(s) 259, 291
BpmI CTGGAG 1 cut(s) 570
Bpu1102I GCTNAGC 1 cut(s) 291
Bpu14I TTCGAA 1 cut(s) 896
BpuEI CTTGAG 1 cut(s) 787
BpuMI CCSGG 1 cut(s) 222
BsaHI GRCGYC 1 cut(s) 315
BsaJI CCNNGG 3 cut(s) 174, 237, 934
BsaWI WCCGGW 2 cut(s) 70, 147
BsaXI ACNNNNNCTCC 2 cut(s) 806, 836
Bsc4I CCNNNNNNNGG 6 cut(s) 12, 50, 518, 569, 865, 866
Bse118I RCCGGY 4 cut(s) 5, 50, 126, 967
Bse1I ACTGG 4 cut(s) 454, 587, 861, 982
Bse3DI GCAATG 2 cut(s) 41, 300
BseAI TCCGGA 1 cut(s) 147
BseBI CCWGG 3 cut(s) 239, 744, 936
BseDI CCNNGG 3 cut(s) 174, 237, 934
BseGI GGATG 4 cut(s) 184, 418, 496, 928
BseLI CCNNNNNNNGG 6 cut(s) 12, 50, 518, 569, 865, 866
BseMI GCAATG 2 cut(s) 41, 300
BseMII CTCAG 2 cut(s) 305, 710
BseNI ACTGG 4 cut(s) 454, 587, 861, 982
BseRI GAGGAG 7 cut(s) 57, 81, 84, 87, 90, 492, 540
BseXI GCAGC 4 cut(s) 59, 292, 345, 937
BseYI CCCAGC 1 cut(s) 11
BsgI GTGCAG 1 cut(s) 344
BshFI GGCC 5 cut(s) 5, 40, 130, 523, 726
BsiHKAI GWGCWC 1 cut(s) 964
BsiHKCI CYCGRG 1 cut(s) 173
BsiSI CCGG 8 cut(s) 6, 44, 51, 71, 127, 148, 221, 968
BslFI GGGAC 2 cut(s) 62, 929
BslI CCNNNNNNNGG 6 cut(s) 12, 50, 518, 569, 865, 866
BsmAI GTCTC 1 cut(s) 763
BsmFI GGGAC 2 cut(s) 62, 929
BsnI GGCC 5 cut(s) 5, 40, 130, 523, 726
BsoBI CYCGRG 1 cut(s) 173
Bsp119I TTCGAA 1 cut(s) 896
Bsp1286I GDGCHC 2 cut(s) 872, 964
Bsp13I TCCGGA 1 cut(s) 147
Bsp1407I TGTACA 1 cut(s) 829
Bsp143I GATC 3 cut(s) 15, 427, 559
Bsp1720I GCTNAGC 1 cut(s) 291
BspACI CCGC 6 cut(s) 59, 62, 81, 132, 353, 410
BspANI GGCC 5 cut(s) 5, 40, 130, 523, 726
BspCNI CTCAG 2 cut(s) 304, 711
BspEI TCCGGA 1 cut(s) 147
BspLI GGNNCC 5 cut(s) 17, 522, 540, 725, 929
BspPI GGATC 3 cut(s) 10, 23, 554
BspT104I TTCGAA 1 cut(s) 896
BsrDI GCAATG 2 cut(s) 41, 300
BsrFI RCCGGY 4 cut(s) 5, 50, 126, 967
BsrGI TGTACA 1 cut(s) 829
BsrI ACTGG 4 cut(s) 454, 587, 861, 982
BssAI RCCGGY 4 cut(s) 5, 50, 126, 967
BssECI CCNNGG 3 cut(s) 174, 237, 934
BssMI GATC 3 cut(s) 15, 427, 559
BssNI GRCGYC 1 cut(s) 315
Bst2UI CCWGG 3 cut(s) 239, 744, 936
Bst4CI ACNGT 4 cut(s) 666, 787, 818, 839
BstACI GRCGYC 1 cut(s) 315
BstAUI TGTACA 1 cut(s) 829
BstBI TTCGAA 1 cut(s) 896
BstC8I GCNNGC 4 cut(s) 7, 132, 297, 468
BstDEI CTNAG 2 cut(s) 291, 719
BstF5I GGATG 4 cut(s) 184, 418, 496, 928
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 1 cut(s) 11
BstKTI GATC 3 cut(s) 18, 430, 562
BstMAI GTCTC 1 cut(s) 763
BstMBI GATC 3 cut(s) 15, 427, 559
BstMWI GCNNNNNNNGC 7 cut(s) 296, 305, 314, 876, 947, 959, 968
BstNI CCWGG 3 cut(s) 239, 744, 936
BstSCI CCNGG 4 cut(s) 220, 237, 742, 934
BstSFI CTRYAG 1 cut(s) 873
BstV1I GCAGC 4 cut(s) 59, 292, 345, 937
BstX2I RGATCY 1 cut(s) 15
BstXI CCANNNNNNTGG 1 cut(s) 516
BstYI RGATCY 1 cut(s) 15
BsuRI GGCC 5 cut(s) 5, 40, 130, 523, 726
BtsCI GGATG 4 cut(s) 184, 418, 496, 928
BtsI GCAGTG 1 cut(s) 285
BtsIMutI CAGTG 2 cut(s) 285, 823
Cac8I GCNNGC 4 cut(s) 7, 132, 297, 468
CfoI GCGC 1 cut(s) 11
Cfr10I RCCGGY 4 cut(s) 5, 50, 126, 967
Cfr13I GGNCC 6 cut(s) 53, 129, 145, 150, 521, 724
CseI GACGC 1 cut(s) 323
Csp6I GTAC 4 cut(s) 590, 614, 635, 830
CviAII CATG 2 cut(s) 527, 880
CviQI GTAC 4 cut(s) 590, 614, 635, 830
DdeI CTNAG 2 cut(s) 291, 719
DpnI GATC 3 cut(s) 17, 429, 561
DpnII GATC 3 cut(s) 15, 427, 559
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 48
Ecl136II GAGCTC 1 cut(s) 962
Eco24I GRGCYC 2 cut(s) 872, 964
Eco47I GGWCC 3 cut(s) 53, 145, 150
Eco53kI GAGCTC 1 cut(s) 962
Eco57I CTGAAG 1 cut(s) 305
Eco88I CYCGRG 1 cut(s) 173
EcoICRI GAGCTC 1 cut(s) 962
EcoO109I RGGNCCY 1 cut(s) 724
EcoRII CCWGG 3 cut(s) 237, 742, 934
EcoT38I GRGCYC 2 cut(s) 872, 964
FaeI CATG 2 cut(s) 530, 883
FalI AAGNNNNNCTT 2 cut(s) 303, 335
FaqI GGGAC 2 cut(s) 62, 929
FatI CATG 2 cut(s) 526, 879
FauI CCCGC 2 cut(s) 88, 139
FauNDI CATATG 2 cut(s) 556, 565
FbaI TGATCA 1 cut(s) 427
FblI GTMKAC 2 cut(s) 114, 169
Fnu4HI GCNGC 5 cut(s) 48, 62, 306, 359, 951
FokI GGATG 4 cut(s) 191, 425, 483, 935
FriOI GRGCYC 2 cut(s) 872, 964
Fsp4HI GCNGC 5 cut(s) 48, 62, 306, 359, 951
FspBI CTAG 1 cut(s) 624
GlaI GCGC 1 cut(s) 10
GluI GCNGC 5 cut(s) 48, 62, 306, 359, 951
GsaI CCCAGC 1 cut(s) 15
GsuI CTGGAG 1 cut(s) 570
HaeII RGCGCY 1 cut(s) 12
HaeIII GGCC 5 cut(s) 5, 40, 130, 523, 726
HapII CCGG 8 cut(s) 6, 44, 51, 71, 127, 148, 221, 968
HgaI GACGC 1 cut(s) 323
HhaI GCGC 1 cut(s) 11
Hin1I GRCGYC 1 cut(s) 315
Hin1II CATG 2 cut(s) 530, 883
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HincII GTYRAC 2 cut(s) 115, 244
HindII GTYRAC 2 cut(s) 115, 244
HinfI GANTC 4 cut(s) 338, 344, 382, 402
HpaII CCGG 8 cut(s) 6, 44, 51, 71, 127, 148, 221, 968
HphI GGTGA 1 cut(s) 467
Hpy166II GTNNAC 6 cut(s) 115, 170, 244, 437, 814, 832
Hpy188I TCNGA 2 cut(s) 343, 645
Hpy188III TCNNGA 2 cut(s) 148, 766
Hpy8I GTNNAC 6 cut(s) 115, 170, 244, 437, 814, 832
Hpy99I CGWCG 2 cut(s) 116, 143
HpyAV CCTTC 4 cut(s) 329, 612, 754, 913
HpyCH4III ACNGT 4 cut(s) 666, 787, 818, 839
HpyCH4V TGCA 4 cut(s) 361, 416, 669, 844
HpyF10VI GCNNNNNNNGC 7 cut(s) 296, 305, 314, 876, 947, 959, 968
HpyF3I CTNAG 2 cut(s) 291, 719
Hsp92I GRCGYC 1 cut(s) 315
Hsp92II CATG 2 cut(s) 530, 883
HspAI GCGC 1 cut(s) 9
Kpn2I TCCGGA 1 cut(s) 147
KroI GCCGGC 1 cut(s) 5
KroNI GCCGGC 1 cut(s) 7
Ksp22I TGATCA 1 cut(s) 427
Kzo9I GATC 3 cut(s) 15, 427, 559
LmnI GCTCC 5 cut(s) 94, 544, 613, 959, 967
Lsp1109I GCAGC 4 cut(s) 59, 292, 345, 937
LweI GCATC 1 cut(s) 403
MaeI CTAG 1 cut(s) 624
MaeIII GTNAC 2 cut(s) 224, 455
MalI GATC 3 cut(s) 17, 429, 561
MboI GATC 3 cut(s) 15, 427, 559
MboII GAAGA 4 cut(s) 391, 725, 818, 910
MflI RGATCY 1 cut(s) 15
MhlI GDGCHC 2 cut(s) 872, 964
MlyI GAGTC 1 cut(s) 353
MroI TCCGGA 1 cut(s) 147
MroNI GCCGGC 1 cut(s) 5
MseI TTAA 3 cut(s) 393, 705, 750
MslI CAYNNNNRTG 2 cut(s) 368, 936
MspA1I CMGCKG 1 cut(s) 83
MspI CCGG 8 cut(s) 6, 44, 51, 71, 127, 148, 221, 968
MspR9I CCNGG 4 cut(s) 222, 239, 744, 936
MvaI CCWGG 3 cut(s) 239, 744, 936
MwoI GCNNNNNNNGC 7 cut(s) 296, 305, 314, 876, 947, 959, 968
NaeI GCCGGC 1 cut(s) 7
NciI CCSGG 1 cut(s) 222
NdeI CATATG 2 cut(s) 556, 565
NdeII GATC 3 cut(s) 15, 427, 559
NgoMIV GCCGGC 1 cut(s) 5
NlaIII CATG 2 cut(s) 530, 883
NlaIV GGNNCC 5 cut(s) 17, 522, 540, 725, 929
NmuCI GTSAC 1 cut(s) 455
NspV TTCGAA 1 cut(s) 896
OliI CACNNNNGTG 1 cut(s) 936
PdiI GCCGGC 1 cut(s) 7
PfeI GAWTC 3 cut(s) 338, 382, 402
PflFI GACNNNGTC 1 cut(s) 143
PflMI CCANNNNNTGG 1 cut(s) 569
PkrI GCNGC 5 cut(s) 49, 63, 307, 360, 952
PleI GAGTC 1 cut(s) 352
PpsI GAGTC 1 cut(s) 352
PshBI ATTAAT 1 cut(s) 705
Psp124BI GAGCTC 1 cut(s) 964
Psp6I CCWGG 3 cut(s) 237, 742, 934
PspFI CCCAGC 1 cut(s) 11
PspGI CCWGG 3 cut(s) 237, 742, 934
PspN4I GGNNCC 5 cut(s) 17, 522, 540, 725, 929
PspPI GGNCC 6 cut(s) 53, 129, 145, 150, 521, 724
PsuI RGATCY 1 cut(s) 15
PsyI GACNNNGTC 1 cut(s) 143
RsaI GTAC 4 cut(s) 591, 615, 636, 831
RsaNI GTAC 4 cut(s) 590, 614, 635, 830
RseI CAYNNNNRTG 2 cut(s) 368, 936
SacI GAGCTC 1 cut(s) 964
SalI GTCGAC 1 cut(s) 113
SaqAI TTAA 3 cut(s) 393, 705, 750
SatI GCNGC 5 cut(s) 48, 62, 306, 359, 951
Sau3AI GATC 3 cut(s) 15, 427, 559
Sau96I GGNCC 6 cut(s) 53, 129, 145, 150, 521, 724
SchI GAGTC 1 cut(s) 353
ScrFI CCNGG 4 cut(s) 222, 239, 744, 936
SduI GDGCHC 2 cut(s) 872, 964
SfaNI GCATC 1 cut(s) 403
SfcI CTRYAG 1 cut(s) 873
SfuI TTCGAA 1 cut(s) 896
SinI GGWCC 3 cut(s) 53, 145, 150
SmiMI CAYNNNNRTG 2 cut(s) 368, 936
SmlI CTYRAG 1 cut(s) 766
SmoI CTYRAG 1 cut(s) 766
SsiI CCGC 6 cut(s) 59, 62, 81, 132, 353, 410
SspI AATATT 1 cut(s) 893
SspMI CTAG 1 cut(s) 624
SstI GAGCTC 1 cut(s) 964
StyD4I CCNGG 4 cut(s) 220, 237, 742, 934
TaaI ACNGT 4 cut(s) 666, 787, 818, 839
TaqI TCGA 3 cut(s) 114, 336, 896
TatI WGTACW 1 cut(s) 829
TauI GCSGC 1 cut(s) 64
TfiI GAWTC 3 cut(s) 338, 382, 402
Tru1I TTAA 3 cut(s) 393, 705, 750
Tru9I TTAA 3 cut(s) 393, 705, 750
TscAI CASTG 2 cut(s) 292, 823
TseFI GTSAC 1 cut(s) 455
TseI GCWGC 4 cut(s) 47, 305, 358, 950
Tsp45I GTSAC 1 cut(s) 455
TspDTI ATGAA 4 cut(s) 148, 485, 773, 784
TspGWI ACGGA 1 cut(s) 380
TspRI CASTG 2 cut(s) 292, 823
Tth111I GACNNNGTC 1 cut(s) 143
Van91I CCANNNNNTGG 1 cut(s) 569
VpaK11BI GGWCC 3 cut(s) 53, 145, 150
VspI ATTAAT 1 cut(s) 705
XcmI CCANNNNNNNNNTGG 1 cut(s) 513
XmiI GTMKAC 2 cut(s) 114, 169
XspI CTAG 1 cut(s) 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.