Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0003051

Physical Location & Seq

Genomic Coordinates Forward (+)

11301828 .. 11303988

Gene Structure 2161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g13730.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCCGGCGCTGGGATCCACCCATACCACCAGCAATGGCCTCCCGCAGCCGCCGCTCCTCATCCGCAGCCTCCGGCTGTTGGCTTCATCGCTCCTCCTCCTCACCACCTCGTCGACAACCCAAACCGAGCCGTTACCGAAGAGGTCCGCACCATATTCATCACTGGTCTTCCAGAGGATGTGAAGGAGCGAGAGATACAGAACCTCCTGAGATGGCTGCCGGGATACGAGGCCTCGCAGGTCAACAACAAAGGCGAGAAGCCTATGAGTTTCGCTCTCTTTTCCACTGCTCAGGAAGCCATTGCTGCCAAAGACGCCCTTCAGGGTATGATTTTCGATTCGGAGTCGAAGGCGGTGCTGCACACGGAGTTGGCGAAGAAGAATCTTTTTGTTAAAAGAGGTGAGGATGGTGATCAAAGTTGTTTTTGTTTTGAATTTGAATCGAGAGTTTTAGTGTTTTCGAACACTAAAGATAACCCACCATGCAATACCTTATTTATTGGAAATCTGGGAGAGAGCATTAATGAGGAAGAATTGAGGAGCCTTTTCAGCTCACAACCTGGATTTAAGCAAATGAAGGTCCTACGACAAGAAAGGCATACTGTTTGTTTCATTGAGTTTGAAGTAAGTAATATTTATTTCATAGTTAAGCGCTGCTCATTGATGTTTTCATGTTGGGATGATGTGAACAGTGCCGCCAATGTACACCAGGCTTTGCAGGGTGCTGTTATCCTCAGTTCTGGTTCTGTAGGCATGAGAATACAATATCCTTTTGGAATTTTTCTGTATAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009790 GO:0009887 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0030510 GO:0030514 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035239 GO:0035295 GO:0042127 GO:0042802 GO:0042803 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0046983 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048660 GO:0048661 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051147 GO:0051148 GO:0051150 GO:0051151 GO:0051171 GO:0051252 GO:0055123 GO:0060255 GO:0065007 GO:0080090 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

265

Amino Acids

29.48

Weight (kDa)

5.77

Isoelectric Point (pI)

55.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21215 AT3G21215 AT3G21215 AT3G21215
fragaria_vesca	FvH4_3g14953 FvH4_3g16432 FvH4_4g15800 FvH4_4g32761 FvH4_5g34521 FvH4_6g16241 FvH4_6g37450 FvH4_6g45392 FvH4_7g15921 FvH4_7g31684
malus_domestica	MD09G1158000.v1.1 MD17G1144000.v1.1
prunus_persica	Prupe.3G168000_v2.0.a1
pyrus_communis	pycom09g07680 pycom17g13730
rosa_chinensis	RchiOBHm_Chr2g0150271 RchiOBHm_Chr2g0150291
rosa_laevigata	RLG00000020483
rosa_multiflora	Rmu_sc0001169.1_g000003 Rmu_sc0020705.1_g000001 Rmu_sc0024000.1_g000001 Rmu_sc0038093.1_g000001 Rmu_sc0040821.1_g000001 Rmu_ssc0000020.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097320 Rroxscaffold_2G00097330
rosa_rugosa	Rorug02G0420200 Rorug02G0420300
rosa_samantha	Rh2AG479200 Rh2BG491500 Rh2CG465400 Rh2DG500300
rosa_wichuraiana	Rw2G038980 Rw2G039110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	229
AccBSI	CCGCTC	1 cut(s)	56
AccI	GTMKAC	1 cut(s)	114
AciI	CCGC	7 cut(s)	45, 51, 54, 65, 148, 353, 696
AclWI	GGATC	2 cut(s)	10, 23
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	434, 777
AcuI	CTGAAG	1 cut(s)	305
AcyI	GRCGYC	1 cut(s)	315
AfaI	GTAC	1 cut(s)	705
AfeI	AGCGCT	1 cut(s)	653
AfiI	CCNNNNNNNGG	2 cut(s)	12, 80
AgsI	TTSAA	3 cut(s)	434, 440, 623
AjnI	CCWGG	2 cut(s)	559, 708
AluBI	AGCT	2 cut(s)	552, 792
AluI	AGCT	2 cut(s)	552, 792
AlwI	GGATC	2 cut(s)	10, 23
Aor51HI	AGCGCT	1 cut(s)	653
AoxI	GGCC	3 cut(s)	3, 38, 231
ApeKI	GCWGC	6 cut(s)	47, 67, 217, 305, 358, 654
ApoI	RAATTY	2 cut(s)	434, 777
AseI	ATTAAT	1 cut(s)	522
AspLEI	GCGC	2 cut(s)	11, 654
AspS9I	GGNCC	2 cut(s)	145, 580
AsuC2I	CCSGG	1 cut(s)	222
AsuHPI	GGTGA	3 cut(s)	95, 413, 422
AsuII	TTCGAA	1 cut(s)	461
AvaII	GGWCC	2 cut(s)	145, 580
BamHI	GGATCC	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	161
BbvI	GCAGC	6 cut(s)	59, 79, 204, 292, 345, 641
BccI	CCATC	2 cut(s)	207, 401
BceAI	ACGGC	1 cut(s)	116
BcgI	CGANNNNNNTGC	2 cut(s)	337, 371
BciT130I	CCWGG	2 cut(s)	561, 710
BciVI	GTATCC	1 cut(s)	218
BclI	TGATCA	1 cut(s)	412
BcnI	CCSGG	1 cut(s)	222
BfmI	CTRYAG	1 cut(s)	747
BfoI	RGCGCY	2 cut(s)	12, 655
BfuAI	ACCTGC	1 cut(s)	229
BfuI	GTATCC	1 cut(s)	218
BisI	GCNGC	9 cut(s)	48, 51, 54, 68, 218, 306, 359, 655, 696
BlsI	GCNGC	9 cut(s)	49, 52, 55, 69, 219, 307, 360, 656, 697
Bme1390I	CCNGG	3 cut(s)	222, 561, 710
Bme18I	GGWCC	2 cut(s)	145, 580
BmgT120I	GGNCC	2 cut(s)	145, 580
BmiI	GGNNCC	2 cut(s)	17, 542
BmrFI	CCNGG	3 cut(s)	222, 561, 710
BpiI	GAAGAC	1 cut(s)	161
BplI	GAGNNNNNCTC	2 cut(s)	259, 291
Bpu10I	CCTNAGC	1 cut(s)	291
Bpu14I	TTCGAA	1 cut(s)	461
BpuMI	CCSGG	1 cut(s)	222
BsaBI	GATNNNNATC	1 cut(s)	411
BsaHI	GRCGYC	1 cut(s)	315
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 80
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	1 cut(s)	169
Bse3DI	GCAATG	2 cut(s)	41, 300
Bse8I	GATNNNNATC	1 cut(s)	411
BseBI	CCWGG	2 cut(s)	561, 710
BseGI	GGATG	4 cut(s)	61, 184, 412, 685
BseJI	GATNNNNATC	1 cut(s)	411
BseLI	CCNNNNNNNGG	2 cut(s)	12, 80
BseMI	GCAATG	2 cut(s)	41, 300
BseMII	CTCAG	3 cut(s)	200, 305, 748
BseNI	ACTGG	1 cut(s)	169
BseRI	GAGGAG	5 cut(s)	48, 84, 87, 90, 553
BseXI	GCAGC	6 cut(s)	59, 79, 204, 292, 345, 641
BseYI	CCCAGC	1 cut(s)	11
BsgI	GTGCAG	1 cut(s)	344
BshFI	GGCC	3 cut(s)	5, 40, 233
BsiSI	CCGG	3 cut(s)	6, 74, 221
BslI	CCNNNNNNNGG	2 cut(s)	12, 80
BsnI	GGCC	3 cut(s)	5, 40, 233
Bsp119I	TTCGAA	1 cut(s)	461
Bsp1407I	TGTACA	1 cut(s)	703
Bsp143I	GATC	2 cut(s)	15, 412
BspACI	CCGC	7 cut(s)	45, 51, 54, 65, 148, 353, 696
BspANI	GGCC	3 cut(s)	5, 40, 233
BspCNI	CTCAG	3 cut(s)	201, 304, 747
BspLI	GGNNCC	2 cut(s)	17, 542
BspMI	ACCTGC	1 cut(s)	229
BspPI	GGATC	2 cut(s)	10, 23
BspT104I	TTCGAA	1 cut(s)	461
BsrBI	CCGCTC	1 cut(s)	56
BsrDI	GCAATG	2 cut(s)	41, 300
BsrFI	RCCGGY	1 cut(s)	5
BsrGI	TGTACA	1 cut(s)	703
BsrI	ACTGG	1 cut(s)	169
BssAI	RCCGGY	1 cut(s)	5
BssMI	GATC	2 cut(s)	15, 412
BssNI	GRCGYC	1 cut(s)	315
Bst2UI	CCWGG	2 cut(s)	561, 710
Bst4CI	ACNGT	2 cut(s)	604, 692
Bst6I	CTCTTC	1 cut(s)	135
BstACI	GRCGYC	1 cut(s)	315
BstAUI	TGTACA	1 cut(s)	703
BstBI	TTCGAA	1 cut(s)	461
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	3 cut(s)	209, 291, 734
BstF5I	GGATG	4 cut(s)	61, 184, 412, 685
BstH2I	RGCGCY	2 cut(s)	12, 655
BstHHI	GCGC	2 cut(s)	11, 654
BstKTI	GATC	2 cut(s)	18, 415
BstMBI	GATC	2 cut(s)	15, 412
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 296, 305, 314, 549
BstNI	CCWGG	2 cut(s)	561, 710
BstSCI	CCNGG	3 cut(s)	220, 559, 708
BstSFI	CTRYAG	1 cut(s)	747
BstV1I	GCAGC	6 cut(s)	59, 79, 204, 292, 345, 641
BstV2I	GAAGAC	1 cut(s)	161
BstX2I	RGATCY	1 cut(s)	15
BstYI	RGATCY	1 cut(s)	15
BsuI	GTATCC	1 cut(s)	218
BsuRI	GGCC	3 cut(s)	5, 40, 233
BtgZI	GCGATG	1 cut(s)	73
BtsCI	GGATG	4 cut(s)	61, 184, 412, 685
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	3 cut(s)	162, 285, 697
BveI	ACCTGC	1 cut(s)	229
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	2 cut(s)	11, 654
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	2 cut(s)	145, 580
CseI	GACGC	1 cut(s)	323
Csp6I	GTAC	1 cut(s)	704
CviAII	CATG	3 cut(s)	483, 672, 754
CviQI	GTAC	1 cut(s)	704
DdeI	CTNAG	3 cut(s)	209, 291, 734
DpnI	GATC	2 cut(s)	17, 414
DpnII	GATC	2 cut(s)	15, 412
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Eco147I	AGGCCT	1 cut(s)	233
Eco47I	GGWCC	2 cut(s)	145, 580
Eco47III	AGCGCT	1 cut(s)	653
Eco57I	CTGAAG	1 cut(s)	305
EcoO109I	RGGNCCY	1 cut(s)	580
EcoRII	CCWGG	2 cut(s)	559, 708
FaeI	CATG	3 cut(s)	486, 675, 757
FalI	AAGNNNNNCTT	2 cut(s)	303, 335
FatI	CATG	3 cut(s)	482, 671, 753
FauI	CCCGC	1 cut(s)	52
FbaI	TGATCA	1 cut(s)	412
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	9 cut(s)	48, 51, 54, 68, 218, 306, 359, 655, 696
FokI	GGATG	4 cut(s)	48, 191, 419, 692
Fsp4HI	GCNGC	9 cut(s)	48, 51, 54, 68, 218, 306, 359, 655, 696
GlaI	GCGC	2 cut(s)	10, 653
GluI	GCNGC	9 cut(s)	48, 51, 54, 68, 218, 306, 359, 655, 696
GsaI	CCCAGC	1 cut(s)	15
HaeII	RGCGCY	2 cut(s)	12, 655
HaeIII	GGCC	3 cut(s)	5, 40, 233
HapII	CCGG	3 cut(s)	6, 74, 221
HgaI	GACGC	1 cut(s)	323
HhaI	GCGC	2 cut(s)	11, 654
Hin1I	GRCGYC	1 cut(s)	315
Hin1II	CATG	3 cut(s)	486, 675, 757
Hin6I	GCGC	2 cut(s)	9, 652
HinP1I	GCGC	2 cut(s)	9, 652
HincII	GTYRAC	2 cut(s)	115, 244
HindII	GTYRAC	2 cut(s)	115, 244
HinfI	GANTC	4 cut(s)	338, 344, 382, 440
HpaII	CCGG	3 cut(s)	6, 74, 221
HphI	GGTGA	3 cut(s)	95, 413, 422
Hpy166II	GTNNAC	4 cut(s)	115, 244, 688, 706
Hpy188I	TCNGA	1 cut(s)	343
Hpy188III	TCNNGA	4 cut(s)	173, 208, 293, 444
Hpy8I	GTNNAC	4 cut(s)	115, 244, 688, 706
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	4 cut(s)	178, 329, 343, 571
HpyCH4III	ACNGT	2 cut(s)	604, 692
HpyCH4V	TGCA	3 cut(s)	361, 486, 718
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 296, 305, 314, 549
HpyF3I	CTNAG	3 cut(s)	209, 291, 734
Hsp92I	GRCGYC	1 cut(s)	315
Hsp92II	CATG	3 cut(s)	486, 675, 757
HspAI	GCGC	2 cut(s)	9, 652
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
Ksp22I	TGATCA	1 cut(s)	412
Kzo9I	GATC	2 cut(s)	15, 412
LmnI	GCTCC	4 cut(s)	61, 97, 187, 540
Lsp1109I	GCAGC	6 cut(s)	59, 79, 204, 292, 345, 641
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	2 cut(s)	17, 414
MbiI	CCGCTC	1 cut(s)	56
MboI	GATC	2 cut(s)	15, 412
MboII	GAAGA	5 cut(s)	152, 161, 388, 391, 542
MflI	RGATCY	1 cut(s)	15
MluCI	AATT	3 cut(s)	434, 533, 777
MlyI	GAGTC	1 cut(s)	353
MroNI	GCCGGC	1 cut(s)	5
MseI	TTAA	4 cut(s)	393, 522, 567, 648
MspI	CCGG	3 cut(s)	6, 74, 221
MspR9I	CCNGG	3 cut(s)	222, 561, 710
MvaI	CCWGG	2 cut(s)	561, 710
MwoI	GCNNNNNNNGC	5 cut(s)	53, 296, 305, 314, 549
NaeI	GCCGGC	1 cut(s)	7
NciI	CCSGG	1 cut(s)	222
NdeII	GATC	2 cut(s)	15, 412
NgoMIV	GCCGGC	1 cut(s)	5
NlaIII	CATG	3 cut(s)	486, 675, 757
NlaIV	GGNNCC	2 cut(s)	17, 542
NspV	TTCGAA	1 cut(s)	461
PceI	AGGCCT	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	1 cut(s)	371
PdiI	GCCGGC	1 cut(s)	7
PfeI	GAWTC	3 cut(s)	338, 382, 440
PkrI	GCNGC	9 cut(s)	49, 52, 55, 69, 219, 307, 360, 656, 697
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
PpuMI	RGGWCCY	1 cut(s)	580
PshBI	ATTAAT	1 cut(s)	522
Psp5II	RGGWCCY	1 cut(s)	580
Psp6I	CCWGG	2 cut(s)	559, 708
PspFI	CCCAGC	1 cut(s)	11
PspGI	CCWGG	2 cut(s)	559, 708
PspN4I	GGNNCC	2 cut(s)	17, 542
PspPI	GGNCC	2 cut(s)	145, 580
PspPPI	RGGWCCY	1 cut(s)	580
PsuI	RGATCY	1 cut(s)	15
RsaI	GTAC	1 cut(s)	705
RsaNI	GTAC	1 cut(s)	704
SalI	GTCGAC	1 cut(s)	113
SaqAI	TTAA	4 cut(s)	393, 522, 567, 648
SatI	GCNGC	9 cut(s)	48, 51, 54, 68, 218, 306, 359, 655, 696
Sau3AI	GATC	2 cut(s)	15, 412
Sau96I	GGNCC	2 cut(s)	145, 580
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	3 cut(s)	222, 561, 710
SfcI	CTRYAG	1 cut(s)	747
SfuI	TTCGAA	1 cut(s)	461
SinI	GGWCC	2 cut(s)	145, 580
Sse9I	AATT	3 cut(s)	434, 533, 777
SseBI	AGGCCT	1 cut(s)	233
SsiI	CCGC	7 cut(s)	45, 51, 54, 65, 148, 353, 696
SspI	AATATT	1 cut(s)	634
StuI	AGGCCT	1 cut(s)	233
StyD4I	CCNGG	3 cut(s)	220, 559, 708
TaaI	ACNGT	2 cut(s)	604, 692
TaqI	TCGA	5 cut(s)	114, 336, 347, 443, 461
TasI	AATT	3 cut(s)	434, 533, 777
TatI	WGTACW	1 cut(s)	703
TauI	GCSGC	3 cut(s)	53, 56, 698
TfiI	GAWTC	3 cut(s)	338, 382, 440
Tru1I	TTAA	4 cut(s)	393, 522, 567, 648
Tru9I	TTAA	4 cut(s)	393, 522, 567, 648
TscAI	CASTG	3 cut(s)	169, 292, 697
TseI	GCWGC	6 cut(s)	47, 67, 217, 305, 358, 654
TspDTI	ATGAA	6 cut(s)	76, 148, 590, 601, 631, 660
TspGWI	ACGGA	1 cut(s)	380
TspRI	CASTG	3 cut(s)	169, 292, 697
VpaK11BI	GGWCC	2 cut(s)	145, 580
VspI	ATTAAT	1 cut(s)	522
XapI	RAATTY	2 cut(s)	434, 777
XmiI	GTMKAC	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.