Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003051

Physical Location & Seq

Genomic Coordinates Reverse (-)

67978689 .. 67983079

Gene Structure 4391 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51961

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGTTTTCAGCGGTTAGAATTTCTCGGGGACGCAGTTTTAGATTACCTGATCACTCTAGTTATCTGTACAACAAATATCCTGGGATGTCGCCAGGAGTCTTAACTGATATGAGGTCTGCTTCGGTAAATAATGATTGTTTTGCCCGAGCTGCTGTGAAGGCTGAATTGCACAAGCACATTCTCCATGCTTCAAAGAAACTCCACAAGGATATAGTTCACACAGTTGATAACTTTAAGAAGTTACCTACACAGTCAACTTTTGGATGGGAATCTGAGACTTCGTTCCCCAGGGTTAGTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009892 GO:0009987 GO:0010033 GO:0010216 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051214 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098542 GO:0098586 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko05206 map05206

Pfam Domains

Protein Families

DEAD Dicer_dimer Helicase_C PAZ ResIII Ribonuclease_3 dsrm

Protein Analysis

100

Amino Acids

11.37

Weight (kDa)

9.93

Isoelectric Point (pI)

50.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuclease_3	PF00636	19 - 74	3.8e-09	Ribonuclease III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21215 AT3G21215 AT3G21215 AT3G21215
fragaria_vesca	FvH4_3g14953 FvH4_3g16432 FvH4_4g15800 FvH4_4g32761 FvH4_5g34521 FvH4_6g16241 FvH4_6g37450 FvH4_6g45392 FvH4_7g15921 FvH4_7g31684
malus_domestica	MD09G1158000.v1.1 MD17G1144000.v1.1
prunus_persica	Prupe.3G168000_v2.0.a1
pyrus_communis	pycom09g07680 pycom17g13730
rosa_chinensis	RchiOBHm_Chr2g0150271 RchiOBHm_Chr2g0150291
rosa_laevigata	RLG00000020483
rosa_multiflora	Rmu_sc0001169.1_g000003 Rmu_sc0020705.1_g000001 Rmu_sc0024000.1_g000001 Rmu_sc0038093.1_g000001 Rmu_sc0040821.1_g000001 Rmu_ssc0000020.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097320 Rroxscaffold_2G00097330
rosa_rugosa	Rorug02G0420200 Rorug02G0420300
rosa_samantha	Rh2AG479200 Rh2BG491500 Rh2CG465400 Rh2DG500300
rosa_wichuraiana	Rw2G038980 Rw2G039110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	11
AcsI	RAATTY	1 cut(s)	18
AfaI	GTAC	1 cut(s)	68
AgsI	TTSAA	1 cut(s)	192
AjnI	CCWGG	3 cut(s)	79, 91, 287
AluBI	AGCT	1 cut(s)	149
AluI	AGCT	1 cut(s)	149
Alw26I	GTCTC	1 cut(s)	269
Ama87I	CYCGRG	2 cut(s)	24, 144
ApeKI	GCWGC	1 cut(s)	149
ApoI	RAATTY	1 cut(s)	18
AvaI	CYCGRG	2 cut(s)	24, 144
BbvI	GCAGC	1 cut(s)	136
BccI	CCATC	1 cut(s)	258
BciT130I	CCWGG	3 cut(s)	81, 93, 289
BclI	TGATCA	1 cut(s)	49
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	1 cut(s)	57
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
Bme1390I	CCNGG	3 cut(s)	81, 93, 289
BmeT110I	CYCGRG	2 cut(s)	24, 144
BmrFI	CCNGG	3 cut(s)	81, 93, 289
BsaBI	GATNNNNATC	1 cut(s)	268
BsaJI	CCNNGG	3 cut(s)	80, 287, 288
Bse8I	GATNNNNATC	1 cut(s)	268
BseBI	CCWGG	3 cut(s)	81, 93, 289
BseDI	CCNNGG	3 cut(s)	80, 287, 288
BseGI	GGATG	2 cut(s)	90, 269
BseJI	GATNNNNATC	1 cut(s)	268
BseMII	CTCAG	1 cut(s)	264
BseXI	GCAGC	1 cut(s)	136
BsiHKCI	CYCGRG	2 cut(s)	24, 144
BslFI	GGGAC	1 cut(s)	42
BsmAI	GTCTC	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	42
BsoBI	CYCGRG	2 cut(s)	24, 144
Bsp1407I	TGTACA	1 cut(s)	66
Bsp143I	GATC	1 cut(s)	49
BspACI	CCGC	1 cut(s)	11
BspCNI	CTCAG	1 cut(s)	265
BsrGI	TGTACA	1 cut(s)	66
BssECI	CCNNGG	3 cut(s)	80, 287, 288
BssMI	GATC	1 cut(s)	49
Bst2UI	CCWGG	3 cut(s)	81, 93, 289
Bst4CI	ACNGT	2 cut(s)	223, 252
BstAUI	TGTACA	1 cut(s)	66
BstDEI	CTNAG	1 cut(s)	273
BstF5I	GGATG	2 cut(s)	90, 269
BstKTI	GATC	1 cut(s)	52
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	1 cut(s)	49
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 158
BstNI	CCWGG	3 cut(s)	81, 93, 289
BstSCI	CCNGG	3 cut(s)	79, 91, 287
BstV1I	GCAGC	1 cut(s)	136
BtsCI	GGATG	2 cut(s)	90, 269
CseI	GACGC	1 cut(s)	39
Csp6I	GTAC	1 cut(s)	67
CviAII	CATG	1 cut(s)	185
CviJI	RGCY	2 cut(s)	149, 161
CviKI_1	RGCY	2 cut(s)	149, 161
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	1 cut(s)	273
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
Eco88I	CYCGRG	2 cut(s)	24, 144
EcoRII	CCWGG	3 cut(s)	79, 91, 287
FaeI	CATG	1 cut(s)	188
FaiI	YATR	3 cut(s)	110, 186, 212
FaqI	GGGAC	1 cut(s)	42
FatI	CATG	1 cut(s)	184
FbaI	TGATCA	1 cut(s)	49
Fnu4HI	GCNGC	1 cut(s)	150
FokI	GGATG	2 cut(s)	97, 276
Fsp4HI	GCNGC	1 cut(s)	150
FspBI	CTAG	1 cut(s)	57
GluI	GCNGC	1 cut(s)	150
HgaI	GACGC	1 cut(s)	39
Hin1II	CATG	1 cut(s)	188
HincII	GTYRAC	1 cut(s)	255
HindII	GTYRAC	1 cut(s)	255
HinfI	GANTC	2 cut(s)	96, 269
Hpy166II	GTNNAC	2 cut(s)	217, 255
Hpy188I	TCNGA	1 cut(s)	274
Hpy8I	GTNNAC	2 cut(s)	217, 255
HpyAV	CCTTC	1 cut(s)	151
HpyCH4III	ACNGT	2 cut(s)	223, 252
HpyCH4V	TGCA	1 cut(s)	169
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 158
HpyF3I	CTNAG	1 cut(s)	273
Hsp92II	CATG	1 cut(s)	188
Ksp22I	TGATCA	1 cut(s)	49
Kzo9I	GATC	1 cut(s)	49
LpnPI	CCDG	6 cut(s)	60, 66, 78, 93, 105, 274
Lsp1109I	GCAGC	1 cut(s)	136
MaeI	CTAG	1 cut(s)	57
MaeIII	GTNAC	1 cut(s)	240
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MluCI	AATT	2 cut(s)	18, 164
MlyI	GAGTC	1 cut(s)	105
MnlI	CCTC	1 cut(s)	105
MseI	TTAA	2 cut(s)	101, 234
MspA1I	CMGCKG	1 cut(s)	11
MspR9I	CCNGG	3 cut(s)	81, 93, 289
MvaI	CCWGG	3 cut(s)	81, 93, 289
MwoI	GCNNNNNNNGC	2 cut(s)	149, 158
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	1 cut(s)	188
PasI	CCCWGGG	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	269
PkrI	GCNGC	1 cut(s)	151
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
Psp6I	CCWGG	3 cut(s)	79, 91, 287
PspGI	CCWGG	3 cut(s)	79, 91, 287
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
SaqAI	TTAA	2 cut(s)	101, 234
SatI	GCNGC	1 cut(s)	150
Sau3AI	GATC	1 cut(s)	49
SchI	GAGTC	1 cut(s)	105
ScrFI	CCNGG	3 cut(s)	81, 93, 289
SetI	ASST	4 cut(s)	49, 116, 151, 247
Sse9I	AATT	2 cut(s)	18, 164
SsiI	CCGC	1 cut(s)	11
SspMI	CTAG	1 cut(s)	57
StyD4I	CCNGG	3 cut(s)	79, 91, 287
TaaI	ACNGT	2 cut(s)	223, 252
TasI	AATT	2 cut(s)	18, 164
TatI	WGTACW	1 cut(s)	66
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	2 cut(s)	101, 234
Tru9I	TTAA	2 cut(s)	101, 234
TseI	GCWGC	1 cut(s)	149
XapI	RAATTY	1 cut(s)	18
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.