Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003051

Physical Location & Seq

Genomic Coordinates Reverse (-)

10356035 .. 10358200

Gene Structure 2166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g16432.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGCTGGCGCCGGCATCCACCCCTACTACCAGCAATGGGCTCCGGCGGCAGCCCCTCCTCCTCCCCCGGCAGTCGCCGCTGCCATTCTTAACTCTGAGAGGATCAAACCCAGCCATCAACCACCTCTCCTCTTCTTTTTCCTCACCATCATCCAGCCCTCACTCTCTTTCTCTCCACTAGATCCGGCCTCCTCCCTCTCCGATTCATTCCCGAATCCAACCGCTTGCTCTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

79

Amino Acids

8.21

Weight (kDa)

5.96

Isoelectric Point (pI)

68.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21215 AT3G21215 AT3G21215 AT3G21215
fragaria_vesca	FvH4_3g14953 FvH4_3g16432 FvH4_4g15800 FvH4_4g32761 FvH4_5g34521 FvH4_6g16241 FvH4_6g37450 FvH4_6g45392 FvH4_7g15921 FvH4_7g31684
malus_domestica	MD09G1158000.v1.1 MD17G1144000.v1.1
prunus_persica	Prupe.3G168000_v2.0.a1
pyrus_communis	pycom09g07680 pycom17g13730
rosa_chinensis	RchiOBHm_Chr2g0150271 RchiOBHm_Chr2g0150291
rosa_laevigata	RLG00000020483
rosa_multiflora	Rmu_sc0001169.1_g000003 Rmu_sc0020705.1_g000001 Rmu_sc0024000.1_g000001 Rmu_sc0038093.1_g000001 Rmu_sc0040821.1_g000001 Rmu_ssc0000020.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097320 Rroxscaffold_2G00097330
rosa_rugosa	Rorug02G0420200 Rorug02G0420300
rosa_samantha	Rh2AG479200 Rh2BG491500 Rh2CG465400 Rh2DG500300
rosa_wichuraiana	Rw2G038980 Rw2G039110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	8
AciI	CCGC	3 cut(s)	47, 78, 222
AclWI	GGATC	2 cut(s)	110, 176
AcyI	GRCGYC	1 cut(s)	9
AfiI	CCNNNNNNNGG	1 cut(s)	37
AlwI	GGATC	2 cut(s)	110, 176
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	2 cut(s)	50, 80
AspLEI	GCGC	1 cut(s)	11
AsuC2I	CCSGG	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	136
BanI	GGYRCC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	43
BbvI	GCAGC	2 cut(s)	62, 67
BccI	CCATC	2 cut(s)	123, 155
BcnI	CCSGG	1 cut(s)	68
BfaI	CTAG	1 cut(s)	179
BfoI	RGCGCY	1 cut(s)	12
BisI	GCNGC	4 cut(s)	48, 51, 78, 81
BlsI	GCNGC	4 cut(s)	49, 52, 79, 82
Bme1390I	CCNGG	1 cut(s)	68
BmiI	GGNNCC	2 cut(s)	10, 42
BmrFI	CCNGG	1 cut(s)	68
BmsI	GCATC	1 cut(s)	24
BpuMI	CCSGG	1 cut(s)	68
BsaHI	GRCGYC	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	66
BsaXI	ACNNNNNCTCC	2 cut(s)	111, 141
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse118I	RCCGGY	1 cut(s)	11
Bse3DI	GCAATG	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	66
BseGI	GGATG	2 cut(s)	15, 150
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMI	GCAATG	1 cut(s)	41
BseMII	CTCAG	1 cut(s)	87
BseRI	GAGGAG	4 cut(s)	48, 51, 119, 181
BseXI	GCAGC	2 cut(s)	62, 67
BseYI	CCCAGC	1 cut(s)	110
BshFI	GGCC	1 cut(s)	188
BshNI	GGYRCC	1 cut(s)	8
BsiSI	CCGG	4 cut(s)	12, 44, 68, 185
BslI	CCNNNNNNNGG	1 cut(s)	37
BsnI	GGCC	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp143I	GATC	2 cut(s)	102, 181
BspACI	CCGC	3 cut(s)	47, 78, 222
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	1 cut(s)	88
BspLI	GGNNCC	2 cut(s)	10, 42
BspPI	GGATC	2 cut(s)	110, 176
BspT107I	GGYRCC	1 cut(s)	8
BsrDI	GCAATG	1 cut(s)	41
BsrFI	RCCGGY	1 cut(s)	11
BssAI	RCCGGY	1 cut(s)	11
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	2 cut(s)	102, 181
BssNI	GRCGYC	1 cut(s)	9
Bst6I	CTCTTC	1 cut(s)	137
BstACI	GRCGYC	1 cut(s)	9
BstC8I	GCNNGC	3 cut(s)	7, 13, 226
BstDEI	CTNAG	1 cut(s)	96
BstF5I	GGATG	2 cut(s)	15, 150
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	2 cut(s)	105, 184
BstMBI	GATC	2 cut(s)	102, 181
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 77
BstSCI	CCNGG	1 cut(s)	66
BstV1I	GCAGC	2 cut(s)	62, 67
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	188
BtsCI	GGATG	2 cut(s)	15, 150
Cac8I	GCNNGC	3 cut(s)	7, 13, 226
CfoI	GCGC	1 cut(s)	11
Cfr10I	RCCGGY	1 cut(s)	11
CviJI	RGCY	6 cut(s)	5, 41, 53, 114, 157, 188
CviKI_1	RGCY	6 cut(s)	5, 41, 53, 114, 157, 188
DdeI	CTNAG	1 cut(s)	96
DinI	GGCGCC	1 cut(s)	10
DpnI	GATC	2 cut(s)	104, 183
DpnII	GATC	2 cut(s)	102, 181
Eam1104I	CTCTTC	1 cut(s)	137
EarI	CTCTTC	1 cut(s)	137
Eco24I	GRGCYC	1 cut(s)	43
EcoT38I	GRGCYC	1 cut(s)	43
EgeI	GGCGCC	1 cut(s)	10
EheI	GGCGCC	1 cut(s)	10
Fnu4HI	GCNGC	4 cut(s)	48, 51, 78, 81
FokI	GGATG	2 cut(s)	2, 137
FriOI	GRGCYC	1 cut(s)	43
Fsp4HI	GCNGC	4 cut(s)	48, 51, 78, 81
FspBI	CTAG	1 cut(s)	179
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	4 cut(s)	48, 51, 78, 81
GsaI	CCCAGC	1 cut(s)	114
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	188
HapII	CCGG	4 cut(s)	12, 44, 68, 185
HhaI	GCGC	1 cut(s)	11
Hin1I	GRCGYC	1 cut(s)	9
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HinfI	GANTC	2 cut(s)	203, 214
HpaII	CCGG	4 cut(s)	12, 44, 68, 185
HphI	GGTGA	1 cut(s)	136
Hpy188I	TCNGA	2 cut(s)	97, 202
Hpy188III	TCNNGA	1 cut(s)	211
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 77
HpyF3I	CTNAG	1 cut(s)	96
Hsp92I	GRCGYC	1 cut(s)	9
HspAI	GCGC	1 cut(s)	9
KasI	GGCGCC	1 cut(s)	8
KroI	GCCGGC	1 cut(s)	11
KroNI	GCCGGC	1 cut(s)	13
Kzo9I	GATC	2 cut(s)	102, 181
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	7 cut(s)	25, 44, 57, 81, 124, 167, 198
Lsp1109I	GCAGC	2 cut(s)	62, 67
LweI	GCATC	1 cut(s)	24
MaeI	CTAG	1 cut(s)	179
MalI	GATC	2 cut(s)	104, 183
MboI	GATC	2 cut(s)	102, 181
MboII	GAAGA	1 cut(s)	124
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	1 cut(s)	43
Mly113I	GGCGCC	1 cut(s)	9
MroNI	GCCGGC	1 cut(s)	11
MseI	TTAA	1 cut(s)	90
MspA1I	CMGCKG	1 cut(s)	80
MspI	CCGG	4 cut(s)	12, 44, 68, 185
MspR9I	CCNGG	1 cut(s)	68
MwoI	GCNNNNNNNGC	2 cut(s)	47, 77
NaeI	GCCGGC	1 cut(s)	13
NarI	GGCGCC	1 cut(s)	9
NciI	CCSGG	1 cut(s)	68
NdeII	GATC	2 cut(s)	102, 181
NgoMIV	GCCGGC	1 cut(s)	11
NlaIV	GGNNCC	2 cut(s)	10, 42
PdiI	GCCGGC	1 cut(s)	13
PfeI	GAWTC	2 cut(s)	203, 214
PkrI	GCNGC	4 cut(s)	49, 52, 79, 82
PluTI	GGCGCC	1 cut(s)	12
PspFI	CCCAGC	1 cut(s)	110
PspN4I	GGNNCC	2 cut(s)	10, 42
PsuI	RGATCY	1 cut(s)	181
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	4 cut(s)	48, 51, 78, 81
Sau3AI	GATC	2 cut(s)	102, 181
ScrFI	CCNGG	1 cut(s)	68
SduI	GDGCHC	1 cut(s)	43
SetI	ASST	1 cut(s)	127
SfaNI	GCATC	1 cut(s)	24
SfoI	GGCGCC	1 cut(s)	10
SsiI	CCGC	3 cut(s)	47, 78, 222
SspDI	GGCGCC	1 cut(s)	8
SspMI	CTAG	1 cut(s)	179
StyD4I	CCNGG	1 cut(s)	66
TauI	GCSGC	2 cut(s)	50, 80
TfiI	GAWTC	2 cut(s)	203, 214
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TseI	GCWGC	2 cut(s)	50, 80
TspDTI	ATGAA	1 cut(s)	195
XspI	CTAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.