Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024000.1

Orthogroup ID

OG0003051

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 962

Gene Structure 962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024000.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 398 bp

gcgagaagcccatgagcttcgcgctcttcgccactgctcagcaagctatcgctgccaaagacgctcttcagagtatggttttcgatacggaatcgaaggcggtgttgcatacggagatggcaaagaagaatctttttgtgaaaagagggattgtaggggattcaaatgcttatgatcaaagtaaacgattgcgtactggtgactacacacaggctggttattccagtccggtgccttttcatccaccaccgccacctgtttggggaccgcacgggtatatggctccaccacctcctccatatgatccatatggttatcctgttgctccagtaccaatgcccccttctgctcctgtaccagcacccagcagttatgtacctgttctggtaatccactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009790 GO:0009887 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0030510 GO:0030514 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035239 GO:0035295 GO:0042127 GO:0042802 GO:0042803 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0046983 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048660 GO:0048661 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051147 GO:0051148 GO:0051150 GO:0051151 GO:0051171 GO:0051252 GO:0055123 GO:0060255 GO:0065007 GO:0080090 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

131

Amino Acids

14.14

Weight (kDa)

8.23

Isoelectric Point (pI)

84.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21215 AT3G21215 AT3G21215 AT3G21215
fragaria_vesca	FvH4_3g14953 FvH4_3g16432 FvH4_4g15800 FvH4_4g32761 FvH4_5g34521 FvH4_6g16241 FvH4_6g37450 FvH4_6g45392 FvH4_7g15921 FvH4_7g31684
malus_domestica	MD09G1158000.v1.1 MD17G1144000.v1.1
prunus_persica	Prupe.3G168000_v2.0.a1
pyrus_communis	pycom09g07680 pycom17g13730
rosa_chinensis	RchiOBHm_Chr2g0150271 RchiOBHm_Chr2g0150291
rosa_laevigata	RLG00000020483
rosa_multiflora	Rmu_sc0001169.1_g000003 Rmu_sc0020705.1_g000001 Rmu_sc0024000.1_g000001 Rmu_sc0038093.1_g000001 Rmu_sc0040821.1_g000001 Rmu_ssc0000020.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097320 Rroxscaffold_2G00097330
rosa_rugosa	Rorug02G0420200 Rorug02G0420300
rosa_samantha	Rh2AG479200 Rh2BG491500 Rh2CG465400 Rh2DG500300
rosa_wichuraiana	Rw2G038980 Rw2G039110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	231
AccII	CGCG	1 cut(s)	22
AciI	CCGC	3 cut(s)	100, 250, 268
AclWI	GGATC	1 cut(s)	298
AcuI	CTGAAG	1 cut(s)	52
AfaI	GTAC	4 cut(s)	195, 332, 356, 377
AfiI	CCNNNNNNNGG	1 cut(s)	262
AgsI	TTSAA	1 cut(s)	164
AjuI	GAANNNNNNNTTGG	2 cut(s)	327, 359
AluBI	AGCT	2 cut(s)	17, 46
AluI	AGCT	2 cut(s)	17, 46
AlwI	GGATC	1 cut(s)	298
ApeKI	GCWGC	1 cut(s)	52
AspLEI	GCGC	1 cut(s)	24
AspS9I	GGNCC	1 cut(s)	265
AsuHPI	GGTGA	1 cut(s)	211
AvaII	GGWCC	1 cut(s)	265
BanI	GGYRCC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	39
BccI	CCATC	1 cut(s)	111
BclI	TGATCA	1 cut(s)	174
BisI	GCNGC	1 cut(s)	53
BlpI	GCTNAGC	1 cut(s)	38
BlsI	GCNGC	1 cut(s)	54
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	265
BmiI	GGNNCC	3 cut(s)	233, 266, 284
BpmI	CTGGAG	1 cut(s)	311
Bpu1102I	GCTNAGC	1 cut(s)	38
BsaWI	WCCGGW	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
Bse1I	ACTGG	3 cut(s)	201, 224, 328
BseGI	GGATG	1 cut(s)	240
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseMII	CTCAG	1 cut(s)	52
BseNI	ACTGG	3 cut(s)	201, 224, 328
BseRI	GAGGAG	1 cut(s)	284
BseXI	GCAGC	1 cut(s)	39
BseYI	CCCAGC	1 cut(s)	364
Bsh1236I	CGCG	1 cut(s)	22
BshNI	GGYRCC	1 cut(s)	231
BsiSI	CCGG	1 cut(s)	229
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	1 cut(s)	262
BsmFI	GGGAC	1 cut(s)	278
Bsp143I	GATC	2 cut(s)	174, 303
Bsp1720I	GCTNAGC	1 cut(s)	38
BspACI	CCGC	3 cut(s)	100, 250, 268
BspCNI	CTCAG	1 cut(s)	51
BspFNI	CGCG	1 cut(s)	22
BspLI	GGNNCC	3 cut(s)	233, 266, 284
BspPI	GGATC	1 cut(s)	298
BspQI	GCTCTTC	2 cut(s)	31, 71
BspT107I	GGYRCC	1 cut(s)	231
BsrI	ACTGG	3 cut(s)	201, 224, 328
BssMI	GATC	2 cut(s)	174, 303
Bst6I	CTCTTC	2 cut(s)	31, 71
BstC8I	GCNNGC	1 cut(s)	44
BstDEI	CTNAG	1 cut(s)	38
BstF5I	GGATG	1 cut(s)	240
BstFNI	CGCG	1 cut(s)	22
BstHHI	GCGC	1 cut(s)	24
BstKTI	GATC	2 cut(s)	177, 306
BstMBI	GATC	2 cut(s)	174, 303
BstMWI	GCNNNNNNNGC	4 cut(s)	28, 43, 52, 61
BstUI	CGCG	1 cut(s)	22
BstV1I	GCAGC	1 cut(s)	39
BstXI	CCANNNNNNTGG	1 cut(s)	260
BtsCI	GGATG	1 cut(s)	240
BtsI	GCAGTG	1 cut(s)	32
BtsIMutI	CAGTG	2 cut(s)	32, 393
Cac8I	GCNNGC	1 cut(s)	44
CfoI	GCGC	1 cut(s)	24
Cfr13I	GGNCC	1 cut(s)	265
CseI	GACGC	1 cut(s)	70
Csp6I	GTAC	4 cut(s)	194, 331, 355, 376
CviAII	CATG	1 cut(s)	12
CviJI	RGCY	5 cut(s)	9, 17, 46, 214, 283
CviKI_1	RGCY	5 cut(s)	9, 17, 46, 214, 283
CviQI	GTAC	4 cut(s)	194, 331, 355, 376
DdeI	CTNAG	1 cut(s)	38
DpnI	GATC	2 cut(s)	176, 305
DpnII	GATC	2 cut(s)	174, 303
Eam1104I	CTCTTC	2 cut(s)	31, 71
EarI	CTCTTC	2 cut(s)	31, 71
Eco47I	GGWCC	1 cut(s)	265
Eco57I	CTGAAG	1 cut(s)	52
FaeI	CATG	1 cut(s)	15
FalI	AAGNNNNNCTT	2 cut(s)	50, 82
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	1 cut(s)	11
FauNDI	CATATG	2 cut(s)	300, 309
FbaI	TGATCA	1 cut(s)	174
Fnu4HI	GCNGC	1 cut(s)	53
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	1 cut(s)	53
GlaI	GCGC	1 cut(s)	23
GluI	GCNGC	1 cut(s)	53
GsaI	CCCAGC	1 cut(s)	368
GsuI	CTGGAG	1 cut(s)	311
HapII	CCGG	1 cut(s)	229
HgaI	GACGC	1 cut(s)	70
HhaI	GCGC	1 cut(s)	24
Hin1II	CATG	1 cut(s)	15
Hin6I	GCGC	1 cut(s)	22
HinP1I	GCGC	1 cut(s)	22
HinfI	GANTC	3 cut(s)	91, 129, 160
HpaII	CCGG	1 cut(s)	229
HphI	GGTGA	1 cut(s)	211
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	1 cut(s)	71
Hpy8I	GTNNAC	1 cut(s)	184
HpyAV	CCTTC	2 cut(s)	90, 353
HpyCH4V	TGCA	1 cut(s)	108
HpyF10VI	GCNNNNNNNGC	4 cut(s)	28, 43, 52, 61
HpyF3I	CTNAG	1 cut(s)	38
Hsp92II	CATG	1 cut(s)	15
HspAI	GCGC	1 cut(s)	22
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	2 cut(s)	174, 303
LguI	GCTCTTC	2 cut(s)	31, 71
LmnI	GCTCC	3 cut(s)	288, 330, 354
Lsp1109I	GCAGC	1 cut(s)	39
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	2 cut(s)	176, 305
MboI	GATC	2 cut(s)	174, 303
MboII	GAAGA	3 cut(s)	18, 58, 138
MnlI	CCTC	3 cut(s)	139, 302, 305
MspI	CCGG	1 cut(s)	229
MvnI	CGCG	1 cut(s)	22
MwoI	GCNNNNNNNGC	4 cut(s)	28, 43, 52, 61
NdeI	CATATG	2 cut(s)	300, 309
NdeII	GATC	2 cut(s)	174, 303
NlaIII	CATG	1 cut(s)	15
NlaIV	GGNNCC	3 cut(s)	233, 266, 284
NmuCI	GTSAC	1 cut(s)	199
PciSI	GCTCTTC	2 cut(s)	31, 71
PfeI	GAWTC	3 cut(s)	91, 129, 160
PkrI	GCNGC	1 cut(s)	54
PspFI	CCCAGC	1 cut(s)	364
PspN4I	GGNNCC	3 cut(s)	233, 266, 284
PspPI	GGNCC	1 cut(s)	265
RsaI	GTAC	4 cut(s)	195, 332, 356, 377
RsaNI	GTAC	4 cut(s)	194, 331, 355, 376
SapI	GCTCTTC	2 cut(s)	31, 71
SatI	GCNGC	1 cut(s)	53
Sau3AI	GATC	2 cut(s)	174, 303
Sau96I	GGNCC	1 cut(s)	265
SetI	ASST	5 cut(s)	19, 48, 258, 294, 381
SinI	GGWCC	1 cut(s)	265
SsiI	CCGC	3 cut(s)	100, 250, 268
TaqI	TCGA	2 cut(s)	83, 94
TfiI	GAWTC	3 cut(s)	91, 129, 160
TscAI	CASTG	1 cut(s)	39
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	1 cut(s)	52
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	1 cut(s)	229
TspGWI	ACGGA	2 cut(s)	103, 127
TspRI	CASTG	1 cut(s)	39
VpaK11BI	GGWCC	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.