Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003051

Physical Location & Seq

Genomic Coordinates Reverse (-)

64076734 .. 64082395

Gene Structure 5662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G039110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGCCGGTGCGGGAATTCACCCCTACCATCAGCAATGGGCGCCGGCAGCCGCCCCGCCTCCTCCTCCTGCCGTCGTCGCCGCCGCCCCTCCGCCTCCACCTCACCACCTCGTCGACAACCCGAATCGACCCGCCAACGACGAGGTCCGCACCATTTTCATCACCGGTCTTCCCGAAGATGTGAAGGAGAGGGAGATACAGAACCTCCTCCGATGGCTGCCGGGCTACGAGGCCTCCCAGGTCAACTACAAAGGCGAGAAGCCCATGAGCTTCGCGCTCTTCGCCACTGCTCAGCAAGCTATCGCTGCCAAAGACGCTCTTCAGAGTATGGTTTTCGATACGGAATCGAAGGCGGTGTTGCATACGGAGATGGCAAAGAAGAATCTTTTTGTGAAAAGAGGGATTGTAGGGGATTCAAATGCTTATGATCAAAGTAAACGATTGCGTACTGGTGACTACACACAGGCTGGTTATTCCAGTCCGGTGCCTTTTCATCCGCCACCGCCACCTGTTTGGGGACCACACGGGTATATGGCTCCACCACCTCCTCCATATGATCCATATGGTTATCCTGTTGCTCCAGTACCAATGCCCCCTTCTGCTCCTGTACCAGCACCCAGCAGTTATGTACCTGTTCTGAACACAAAAGATAATCCACCATGCAATACCTTATTTATTGGCAATCTAGGAGAGAGCATTAACGAGGAAGAACTGAGGGGCCTATTCAGCTCACAACCTGGATTTAAGCAAATGAAGATCTTGCGACAGGAAAGGCATACTGTTTGCTTCATTGAGTTTGAAGATGTAAACAGTGCCACTGCTGTACACCACAATTTTCAAGGTGCTGTTATCCCCAGTTCTGGTTCTATAGGCATGAGAATACAATACTCAAAGAACCCATTTGGTAAAAGGAAAGATGGGAACTACCCTGGTGCTGTCCCTGCTGCAAATGGAGCTCCACCAGCTATGACATACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009790 GO:0009887 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0030510 GO:0030514 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035239 GO:0035295 GO:0042127 GO:0042802 GO:0042803 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0046983 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048660 GO:0048661 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051147 GO:0051148 GO:0051150 GO:0051151 GO:0051171 GO:0051252 GO:0055123 GO:0060255 GO:0065007 GO:0080090 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

326

Amino Acids

35.4

Weight (kDa)

7.16

Isoelectric Point (pI)

65.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	224 - 285	6.8e-10	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21215 AT3G21215 AT3G21215 AT3G21215
fragaria_vesca	FvH4_3g14953 FvH4_3g16432 FvH4_4g15800 FvH4_4g32761 FvH4_5g34521 FvH4_6g16241 FvH4_6g37450 FvH4_6g45392 FvH4_7g15921 FvH4_7g31684
malus_domestica	MD09G1158000.v1.1 MD17G1144000.v1.1
prunus_persica	Prupe.3G168000_v2.0.a1
pyrus_communis	pycom09g07680 pycom17g13730
rosa_chinensis	RchiOBHm_Chr2g0150271 RchiOBHm_Chr2g0150291
rosa_laevigata	RLG00000020483
rosa_multiflora	Rmu_sc0001169.1_g000003 Rmu_sc0020705.1_g000001 Rmu_sc0024000.1_g000001 Rmu_sc0038093.1_g000001 Rmu_sc0040821.1_g000001 Rmu_ssc0000020.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097320 Rroxscaffold_2G00097330
rosa_rugosa	Rorug02G0420200 Rorug02G0420300
rosa_samantha	Rh2AG479200 Rh2BG491500 Rh2CG465400 Rh2DG500300
rosa_wichuraiana	Rw2G038980 Rw2G039110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	40, 484
AccI	GTMKAC	1 cut(s)	114
AccII	CGCG	1 cut(s)	275
AclWI	GGATC	1 cut(s)	551
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	15
AcuI	CTGAAG	1 cut(s)	305
AcyI	GRCGYC	1 cut(s)	41
AfaI	GTAC	5 cut(s)	448, 585, 609, 630, 825
AfiI	CCNNNNNNNGG	2 cut(s)	515, 860
AgeI	ACCGGT	1 cut(s)	164
AgsI	TTSAA	3 cut(s)	417, 800, 839
AjnI	CCWGG	3 cut(s)	237, 736, 928
AjuI	GAANNNNNNNTTGG	2 cut(s)	580, 612
AluBI	AGCT	5 cut(s)	270, 299, 729, 956, 965
AluI	AGCT	5 cut(s)	270, 299, 729, 956, 965
Alw21I	GWGCWC	1 cut(s)	958
AlwI	GGATC	1 cut(s)	551
AoxI	GGCC	3 cut(s)	3, 231, 718
ApeKI	GCWGC	4 cut(s)	47, 217, 305, 944
ApoI	RAATTY	1 cut(s)	15
AsiGI	ACCGGT	1 cut(s)	164
AspLEI	GCGC	2 cut(s)	43, 277
AspS9I	GGNCC	3 cut(s)	145, 518, 718
AsuC2I	CCSGG	1 cut(s)	222
AsuHPI	GGTGA	4 cut(s)	11, 95, 154, 464
AvaII	GGWCC	2 cut(s)	145, 518
BanI	GGYRCC	2 cut(s)	40, 484
BanII	GRGCYC	1 cut(s)	958
BbsI	GAAGAC	1 cut(s)	161
Bbv12I	GWGCWC	1 cut(s)	958
BbvI	GCAGC	4 cut(s)	59, 204, 292, 931
BccI	CCATC	4 cut(s)	36, 207, 364, 911
BceAI	ACGGC	1 cut(s)	56
BciT130I	CCWGG	3 cut(s)	239, 738, 930
BclI	TGATCA	1 cut(s)	427
BcnI	CCSGG	1 cut(s)	222
BfaI	CTAG	1 cut(s)	686
BfmI	CTRYAG	1 cut(s)	867
BfoI	RGCGCY	1 cut(s)	44
BglII	AGATCT	1 cut(s)	756
BisI	GCNGC	7 cut(s)	48, 51, 81, 84, 218, 306, 945
BlpI	GCTNAGC	1 cut(s)	291
BlsI	GCNGC	7 cut(s)	49, 52, 82, 85, 219, 307, 946
Bme1390I	CCNGG	4 cut(s)	222, 239, 738, 930
Bme18I	GGWCC	2 cut(s)	145, 518
BmgT120I	GGNCC	3 cut(s)	145, 518, 718
BmiI	GGNNCC	5 cut(s)	42, 486, 519, 537, 719
BmrFI	CCNGG	4 cut(s)	222, 239, 738, 930
BmrI	ACTGGG	1 cut(s)	849
BmuI	ACTGGG	1 cut(s)	849
BpiI	GAAGAC	1 cut(s)	161
BpmI	CTGGAG	1 cut(s)	564
Bpu1102I	GCTNAGC	1 cut(s)	291
BpuMI	CCSGG	1 cut(s)	222
BsaHI	GRCGYC	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	237, 928
BsaWI	WCCGGW	2 cut(s)	164, 481
BsaXI	ACNNNNNCTCC	4 cut(s)	189, 218, 219, 248
Bsc4I	CCNNNNNNNGG	2 cut(s)	515, 860
Bse118I	RCCGGY	3 cut(s)	5, 43, 164
Bse1I	ACTGG	5 cut(s)	454, 477, 581, 855, 976
Bse3DI	GCAATG	1 cut(s)	41
BseBI	CCWGG	3 cut(s)	239, 738, 930
BseDI	CCNNGG	2 cut(s)	237, 928
BseGI	GGATG	1 cut(s)	493
BseLI	CCNNNNNNNGG	2 cut(s)	515, 860
BseMI	GCAATG	1 cut(s)	41
BseMII	CTCAG	2 cut(s)	305, 704
BseNI	ACTGG	5 cut(s)	454, 477, 581, 855, 976
BseRI	GAGGAG	4 cut(s)	51, 54, 197, 537
BseXI	GCAGC	4 cut(s)	59, 204, 292, 931
BseYI	CCCAGC	1 cut(s)	617
Bsh1236I	CGCG	1 cut(s)	275
BshFI	GGCC	3 cut(s)	5, 233, 720
BshNI	GGYRCC	2 cut(s)	40, 484
BshTI	ACCGGT	1 cut(s)	164
BsiHKAI	GWGCWC	1 cut(s)	958
BsiSI	CCGG	5 cut(s)	6, 44, 165, 221, 482
BslFI	GGGAC	2 cut(s)	531, 923
BslI	CCNNNNNNNGG	2 cut(s)	515, 860
BsmFI	GGGAC	2 cut(s)	531, 923
BsnI	GGCC	3 cut(s)	5, 233, 720
Bsp1286I	GDGCHC	1 cut(s)	958
Bsp1407I	TGTACA	1 cut(s)	823
Bsp143I	GATC	3 cut(s)	427, 556, 756
Bsp1720I	GCTNAGC	1 cut(s)	291
BspANI	GGCC	3 cut(s)	5, 233, 720
BspCNI	CTCAG	2 cut(s)	304, 705
BspFNI	CGCG	1 cut(s)	275
BspLI	GGNNCC	5 cut(s)	42, 486, 519, 537, 719
BspPI	GGATC	1 cut(s)	551
BspQI	GCTCTTC	2 cut(s)	284, 324
BspT107I	GGYRCC	2 cut(s)	40, 484
BsrDI	GCAATG	1 cut(s)	41
BsrFI	RCCGGY	3 cut(s)	5, 43, 164
BsrGI	TGTACA	1 cut(s)	823
BsrI	ACTGG	5 cut(s)	454, 477, 581, 855, 976
BssAI	RCCGGY	3 cut(s)	5, 43, 164
BssECI	CCNNGG	2 cut(s)	237, 928
BssMI	GATC	3 cut(s)	427, 556, 756
BssNI	GRCGYC	1 cut(s)	41
Bst2UI	CCWGG	3 cut(s)	239, 738, 930
Bst4CI	ACNGT	2 cut(s)	781, 812
Bst6I	CTCTTC	2 cut(s)	284, 324
BstACI	GRCGYC	1 cut(s)	41
BstAUI	TGTACA	1 cut(s)	823
BstC8I	GCNNGC	2 cut(s)	45, 297
BstDEI	CTNAG	2 cut(s)	291, 713
BstF5I	GGATG	1 cut(s)	493
BstFNI	CGCG	1 cut(s)	275
BstH2I	RGCGCY	1 cut(s)	44
BstHHI	GCGC	2 cut(s)	43, 277
BstKTI	GATC	3 cut(s)	430, 559, 759
BstMBI	GATC	3 cut(s)	427, 556, 756
BstNI	CCWGG	3 cut(s)	239, 738, 930
BstSCI	CCNGG	4 cut(s)	220, 237, 736, 928
BstSFI	CTRYAG	1 cut(s)	867
BstUI	CGCG	1 cut(s)	275
BstV1I	GCAGC	4 cut(s)	59, 204, 292, 931
BstV2I	GAAGAC	1 cut(s)	161
BstX2I	RGATCY	1 cut(s)	756
BstXI	CCANNNNNNTGG	1 cut(s)	513
BstYI	RGATCY	1 cut(s)	756
BsuRI	GGCC	3 cut(s)	5, 233, 720
BtsCI	GGATG	1 cut(s)	493
BtsI	GCAGTG	2 cut(s)	285, 816
BtsIMutI	CAGTG	3 cut(s)	285, 816, 817
Cac8I	GCNNGC	2 cut(s)	45, 297
CfoI	GCGC	2 cut(s)	43, 277
Cfr10I	RCCGGY	3 cut(s)	5, 43, 164
Cfr13I	GGNCC	3 cut(s)	145, 518, 718
CseI	GACGC	1 cut(s)	323
Csp6I	GTAC	5 cut(s)	447, 584, 608, 629, 824
CspAI	ACCGGT	1 cut(s)	164
CviAII	CATG	3 cut(s)	265, 660, 874
CviQI	GTAC	5 cut(s)	447, 584, 608, 629, 824
DdeI	CTNAG	2 cut(s)	291, 713
DinI	GGCGCC	1 cut(s)	42
DpnI	GATC	3 cut(s)	429, 558, 758
DpnII	GATC	3 cut(s)	427, 556, 756
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	284, 324
EarI	CTCTTC	2 cut(s)	284, 324
EciI	GGCGGA	2 cut(s)	81, 486
Ecl136II	GAGCTC	1 cut(s)	956
Eco147I	AGGCCT	1 cut(s)	233
Eco24I	GRGCYC	1 cut(s)	958
Eco47I	GGWCC	2 cut(s)	145, 518
Eco53kI	GAGCTC	1 cut(s)	956
Eco57I	CTGAAG	1 cut(s)	305
EcoICRI	GAGCTC	1 cut(s)	956
EcoO109I	RGGNCCY	1 cut(s)	718
EcoRI	GAATTC	1 cut(s)	15
EcoRII	CCWGG	3 cut(s)	237, 736, 928
EcoT38I	GRGCYC	1 cut(s)	958
EgeI	GGCGCC	1 cut(s)	42
EheI	GGCGCC	1 cut(s)	42
FaeI	CATG	3 cut(s)	268, 663, 877
FalI	AAGNNNNNCTT	2 cut(s)	303, 335
FaqI	GGGAC	2 cut(s)	531, 923
FatI	CATG	3 cut(s)	264, 659, 873
FauI	CCCGC	3 cut(s)	4, 63, 139
FauNDI	CATATG	2 cut(s)	553, 562
FbaI	TGATCA	1 cut(s)	427
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	7 cut(s)	48, 51, 81, 84, 218, 306, 945
FokI	GGATG	1 cut(s)	480
FriOI	GRGCYC	1 cut(s)	958
Fsp4HI	GCNGC	7 cut(s)	48, 51, 81, 84, 218, 306, 945
FspBI	CTAG	1 cut(s)	686
GlaI	GCGC	2 cut(s)	42, 276
GluI	GCNGC	7 cut(s)	48, 51, 81, 84, 218, 306, 945
GsaI	CCCAGC	1 cut(s)	621
GsuI	CTGGAG	1 cut(s)	564
HaeII	RGCGCY	1 cut(s)	44
HaeIII	GGCC	3 cut(s)	5, 233, 720
HapII	CCGG	5 cut(s)	6, 44, 165, 221, 482
HgaI	GACGC	1 cut(s)	323
HhaI	GCGC	2 cut(s)	43, 277
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	3 cut(s)	268, 663, 877
Hin6I	GCGC	2 cut(s)	41, 275
HinP1I	GCGC	2 cut(s)	41, 275
HincII	GTYRAC	2 cut(s)	115, 244
HindII	GTYRAC	2 cut(s)	115, 244
HinfI	GANTC	4 cut(s)	124, 344, 382, 413
HpaII	CCGG	5 cut(s)	6, 44, 165, 221, 482
HphI	GGTGA	4 cut(s)	11, 95, 154, 464
Hpy166II	GTNNAC	5 cut(s)	115, 244, 437, 808, 826
Hpy188I	TCNGA	3 cut(s)	212, 324, 639
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	5 cut(s)	115, 244, 437, 808, 826
Hpy99I	CGWCG	4 cut(s)	77, 80, 116, 143
HpyAV	CCTTC	3 cut(s)	178, 343, 606
HpyCH4III	ACNGT	2 cut(s)	781, 812
HpyCH4V	TGCA	3 cut(s)	361, 663, 947
HpyF3I	CTNAG	2 cut(s)	291, 713
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	3 cut(s)	268, 663, 877
HspAI	GCGC	2 cut(s)	41, 275
KasI	GGCGCC	1 cut(s)	40
KroI	GCCGGC	1 cut(s)	43
KroNI	GCCGGC	1 cut(s)	45
Ksp22I	TGATCA	1 cut(s)	427
Kzo9I	GATC	3 cut(s)	427, 556, 756
LguI	GCTCTTC	2 cut(s)	284, 324
LmnI	GCTCC	5 cut(s)	541, 583, 607, 953, 961
Lsp1109I	GCAGC	4 cut(s)	59, 204, 292, 931
MaeI	CTAG	1 cut(s)	686
MaeIII	GTNAC	1 cut(s)	452
MalI	GATC	3 cut(s)	429, 558, 758
MboI	GATC	3 cut(s)	427, 556, 756
MboII	GAAGA	8 cut(s)	161, 188, 271, 311, 391, 719, 766, 812
MflI	RGATCY	1 cut(s)	756
MhlI	GDGCHC	1 cut(s)	958
MluCI	AATT	2 cut(s)	15, 832
Mly113I	GGCGCC	1 cut(s)	41
MroNI	GCCGGC	1 cut(s)	43
MseI	TTAA	2 cut(s)	699, 744
MspI	CCGG	5 cut(s)	6, 44, 165, 221, 482
MspR9I	CCNGG	4 cut(s)	222, 239, 738, 930
MvaI	CCWGG	3 cut(s)	239, 738, 930
MvnI	CGCG	1 cut(s)	275
NaeI	GCCGGC	1 cut(s)	45
NarI	GGCGCC	1 cut(s)	41
NciI	CCSGG	1 cut(s)	222
NdeI	CATATG	2 cut(s)	553, 562
NdeII	GATC	3 cut(s)	427, 556, 756
NgoMIV	GCCGGC	1 cut(s)	43
NlaIII	CATG	3 cut(s)	268, 663, 877
NlaIV	GGNNCC	5 cut(s)	42, 486, 519, 537, 719
NmuCI	GTSAC	1 cut(s)	452
PceI	AGGCCT	1 cut(s)	233
PciSI	GCTCTTC	2 cut(s)	284, 324
PdiI	GCCGGC	1 cut(s)	45
PfeI	GAWTC	4 cut(s)	124, 344, 382, 413
PflFI	GACNNNGTC	1 cut(s)	143
PinAI	ACCGGT	1 cut(s)	164
PkrI	GCNGC	7 cut(s)	49, 52, 82, 85, 219, 307, 946
PluTI	GGCGCC	1 cut(s)	44
Psp124BI	GAGCTC	1 cut(s)	958
Psp6I	CCWGG	3 cut(s)	237, 736, 928
PspFI	CCCAGC	1 cut(s)	617
PspGI	CCWGG	3 cut(s)	237, 736, 928
PspN4I	GGNNCC	5 cut(s)	42, 486, 519, 537, 719
PspPI	GGNCC	3 cut(s)	145, 518, 718
PsuI	RGATCY	1 cut(s)	756
PsyI	GACNNNGTC	1 cut(s)	143
RsaI	GTAC	5 cut(s)	448, 585, 609, 630, 825
RsaNI	GTAC	5 cut(s)	447, 584, 608, 629, 824
SacI	GAGCTC	1 cut(s)	958
SalI	GTCGAC	1 cut(s)	113
SapI	GCTCTTC	2 cut(s)	284, 324
SaqAI	TTAA	2 cut(s)	699, 744
SatI	GCNGC	7 cut(s)	48, 51, 81, 84, 218, 306, 945
Sau3AI	GATC	3 cut(s)	427, 556, 756
Sau96I	GGNCC	3 cut(s)	145, 518, 718
ScrFI	CCNGG	4 cut(s)	222, 239, 738, 930
SduI	GDGCHC	1 cut(s)	958
SfcI	CTRYAG	1 cut(s)	867
SfoI	GGCGCC	1 cut(s)	42
SinI	GGWCC	2 cut(s)	145, 518
Sse9I	AATT	2 cut(s)	15, 832
SseBI	AGGCCT	1 cut(s)	233
SspDI	GGCGCC	1 cut(s)	40
SspMI	CTAG	1 cut(s)	686
SstI	GAGCTC	1 cut(s)	958
StuI	AGGCCT	1 cut(s)	233
StyD4I	CCNGG	4 cut(s)	220, 237, 736, 928
TaaI	ACNGT	2 cut(s)	781, 812
TaqI	TCGA	4 cut(s)	114, 127, 336, 347
TasI	AATT	2 cut(s)	15, 832
TatI	WGTACW	1 cut(s)	823
TauI	GCSGC	3 cut(s)	53, 83, 86
TfiI	GAWTC	4 cut(s)	124, 344, 382, 413
Tru1I	TTAA	2 cut(s)	699, 744
Tru9I	TTAA	2 cut(s)	699, 744
TscAI	CASTG	3 cut(s)	292, 817, 823
TseFI	GTSAC	1 cut(s)	452
TseI	GCWGC	4 cut(s)	47, 217, 305, 944
Tsp45I	GTSAC	1 cut(s)	452
TspDTI	ATGAA	4 cut(s)	148, 482, 767, 778
TspGWI	ACGGA	2 cut(s)	356, 380
TspRI	CASTG	3 cut(s)	292, 817, 823
Tth111I	GACNNNGTC	1 cut(s)	143
VpaK11BI	GGWCC	2 cut(s)	145, 518
XapI	RAATTY	1 cut(s)	15
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	1 cut(s)	686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.