Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0003051

Physical Location & Seq

Genomic Coordinates Forward (+)

12996570 .. 12998824

Gene Structure 2255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1144000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGCCGGCGCTGGGATCCATCCATACCACCAGCAATGGCCTCCCGCAGCCGCCGCTCCTCATCCGCCGCCCCCGGCTGTCGGCTCCATCGCTCCTCCTCCTCACCACCTCGTCGACAACCCAAACCGAGCCGTTACCGAAGAGGTCCGCACCATATTCATCACTGGTCTTCCAGAGGATGTGAAGGAGAGAGAGATACAGAACCTCCTGAGATGGCTGCCGGGATACGAGGCCTCGCAGGTCAACAACAAAGGCGAGAAACCTATGAGTTTCGCTCTCTTTTCCACTGCTCAGCAAGCCATTGCTGCCAAAGACGCCCTTCAGGGTATGATTTTCGATTCGGAATCGAAGGCGGTGCTGCACACGGAGATGGCGAAGAAGAATCTTTTTGTTAAAAGAGGAATTGTAGCTGATACAAGTGCTTACGATCAAAGTAAACGATTGCGAACTGGTGGTGACTACTCACAGGGTGGTTATAGTAGTCCATCTCCTTTTCATCCTCCTCCTCCACCTGTTTGGGGGCCACATGGGTATATGGCTCCACCACCCCCTACGTATGATCCATATGGTGGTTATCCTGTTCCTCCAGTACCAATGCACCCTCCTCCTCCTGTACCAGCACCAGCACCAAGTAGTTATGTACCTGTTCTGAACACTAAAGATAACCCACCATGCAATACCTTATTTATTGGAAATCTGGGAGAGAGCATTAATGAGGAAGAATTGAGGGGCCTTTTCAGCTCACAACCTGGATTTAAGCAAATGAAGGTCCTAAGACAAGAAAGGCATACTGTTTGTTTCATTGAGTTTGAAGTAAGTAATATTTATTTCGTAGTTATGCTCTGCTTATTGACGTTTTCATGTTGGGATGCCCTTTTCTCTATTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009790 GO:0009887 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0030510 GO:0030514 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035239 GO:0035295 GO:0042127 GO:0042802 GO:0042803 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0046983 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048660 GO:0048661 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051147 GO:0051148 GO:0051150 GO:0051151 GO:0051171 GO:0051252 GO:0055123 GO:0060255 GO:0065007 GO:0080090 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

297

Amino Acids

32.52

Weight (kDa)

6.19

Isoelectric Point (pI)

72.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	52 - 114	5.6e-06	RNA recognition motif
RRM_1	PF00076	228 - 271	9e-07	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21215 AT3G21215 AT3G21215 AT3G21215
fragaria_vesca	FvH4_3g14953 FvH4_3g16432 FvH4_4g15800 FvH4_4g32761 FvH4_5g34521 FvH4_6g16241 FvH4_6g37450 FvH4_6g45392 FvH4_7g15921 FvH4_7g31684
malus_domestica	MD09G1158000.v1.1 MD17G1144000.v1.1
prunus_persica	Prupe.3G168000_v2.0.a1
pyrus_communis	pycom09g07680 pycom17g13730
rosa_chinensis	RchiOBHm_Chr2g0150271 RchiOBHm_Chr2g0150291
rosa_laevigata	RLG00000020483
rosa_multiflora	Rmu_sc0001169.1_g000003 Rmu_sc0020705.1_g000001 Rmu_sc0024000.1_g000001 Rmu_sc0038093.1_g000001 Rmu_sc0040821.1_g000001 Rmu_ssc0000020.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097320 Rroxscaffold_2G00097330
rosa_rugosa	Rorug02G0420200 Rorug02G0420300
rosa_samantha	Rh2AG479200 Rh2BG491500 Rh2CG465400 Rh2DG500300
rosa_wichuraiana	Rw2G038980 Rw2G039110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	229
AccB7I	CCANNNNNTGG	1 cut(s)	569
AccBSI	CCGCTC	1 cut(s)	56
AccI	GTMKAC	1 cut(s)	114
AciI	CCGC	7 cut(s)	45, 51, 54, 65, 68, 148, 353
AclWI	GGATC	3 cut(s)	10, 23, 554
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	305
AcyI	GRCGYC	1 cut(s)	315
AdeI	CACNNNGTG	1 cut(s)	470
AfaI	GTAC	3 cut(s)	591, 615, 642
AfiI	CCNNNNNNNGG	4 cut(s)	12, 80, 518, 569
AgsI	TTSAA	1 cut(s)	812
AjnI	CCWGG	1 cut(s)	748
AluBI	AGCT	2 cut(s)	410, 741
AluI	AGCT	2 cut(s)	410, 741
AlwI	GGATC	3 cut(s)	10, 23, 554
AoxI	GGCC	5 cut(s)	3, 38, 231, 521, 730
ApeKI	GCWGC	4 cut(s)	47, 217, 305, 358
AseI	ATTAAT	1 cut(s)	711
AspLEI	GCGC	1 cut(s)	11
AspS9I	GGNCC	4 cut(s)	145, 521, 730, 769
AsuC2I	CCSGG	2 cut(s)	74, 222
AsuHPI	GGTGA	2 cut(s)	95, 467
AvaII	GGWCC	2 cut(s)	145, 769
BamHI	GGATCC	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	161
BbvI	GCAGC	4 cut(s)	59, 204, 292, 345
BccI	CCATC	5 cut(s)	27, 95, 207, 364, 493
BceAI	ACGGC	1 cut(s)	116
BcgI	CGANNNNNNTGC	2 cut(s)	337, 371
BciT130I	CCWGG	1 cut(s)	750
BciVI	GTATCC	1 cut(s)	218
BcnI	CCSGG	2 cut(s)	74, 222
BfoI	RGCGCY	1 cut(s)	12
BfuAI	ACCTGC	1 cut(s)	229
BfuI	GTATCC	1 cut(s)	218
BisI	GCNGC	7 cut(s)	48, 51, 54, 68, 218, 306, 359
BlpI	GCTNAGC	1 cut(s)	291
BlsI	GCNGC	7 cut(s)	49, 52, 55, 69, 219, 307, 360
Bme1390I	CCNGG	3 cut(s)	74, 222, 750
Bme18I	GGWCC	2 cut(s)	145, 769
BmgT120I	GGNCC	4 cut(s)	145, 521, 730, 769
BmiI	GGNNCC	5 cut(s)	17, 85, 522, 540, 731
BmrFI	CCNGG	3 cut(s)	74, 222, 750
BmsI	GCATC	1 cut(s)	859
BpiI	GAAGAC	1 cut(s)	161
BplI	GAGNNNNNCTC	2 cut(s)	259, 291
BpmI	CTGGAG	1 cut(s)	570
Bpu1102I	GCTNAGC	1 cut(s)	291
BpuMI	CCSGG	2 cut(s)	74, 222
BsaAI	YACGTR	1 cut(s)	555
BsaHI	GRCGYC	1 cut(s)	315
BsaJI	CCNNGG	1 cut(s)	72
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bsc4I	CCNNNNNNNGG	4 cut(s)	12, 80, 518, 569
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	3 cut(s)	169, 454, 587
Bse3DI	GCAATG	2 cut(s)	41, 300
BseBI	CCWGG	1 cut(s)	750
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	5 cut(s)	19, 61, 184, 496, 874
BseLI	CCNNNNNNNGG	4 cut(s)	12, 80, 518, 569
BseMI	GCAATG	2 cut(s)	41, 300
BseMII	CTCAG	2 cut(s)	200, 305
BseNI	ACTGG	3 cut(s)	169, 454, 587
BseRI	GAGGAG	8 cut(s)	48, 84, 87, 90, 492, 495, 594, 597
BseXI	GCAGC	4 cut(s)	59, 204, 292, 345
BseYI	CCCAGC	1 cut(s)	11
BsgI	GTGCAG	1 cut(s)	344
BshFI	GGCC	5 cut(s)	5, 40, 233, 523, 732
BsiSI	CCGG	3 cut(s)	6, 74, 221
BslI	CCNNNNNNNGG	4 cut(s)	12, 80, 518, 569
BsnI	GGCC	5 cut(s)	5, 40, 233, 523, 732
Bsp143I	GATC	3 cut(s)	15, 427, 559
Bsp1720I	GCTNAGC	1 cut(s)	291
BspACI	CCGC	7 cut(s)	45, 51, 54, 65, 68, 148, 353
BspANI	GGCC	5 cut(s)	5, 40, 233, 523, 732
BspCNI	CTCAG	2 cut(s)	201, 304
BspLI	GGNNCC	5 cut(s)	17, 85, 522, 540, 731
BspMI	ACCTGC	1 cut(s)	229
BspPI	GGATC	3 cut(s)	10, 23, 554
BsrBI	CCGCTC	1 cut(s)	56
BsrDI	GCAATG	2 cut(s)	41, 300
BsrFI	RCCGGY	1 cut(s)	5
BsrI	ACTGG	3 cut(s)	169, 454, 587
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	3 cut(s)	15, 427, 559
BssNI	GRCGYC	1 cut(s)	315
Bst2UI	CCWGG	1 cut(s)	750
Bst4CI	ACNGT	1 cut(s)	793
Bst6I	CTCTTC	1 cut(s)	135
BstACI	GRCGYC	1 cut(s)	315
BstBAI	YACGTR	1 cut(s)	555
BstC8I	GCNNGC	2 cut(s)	7, 297
BstDEI	CTNAG	3 cut(s)	209, 291, 773
BstF5I	GGATG	5 cut(s)	19, 61, 184, 496, 874
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	3 cut(s)	18, 430, 562
BstMBI	GATC	3 cut(s)	15, 427, 559
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 296, 305, 314, 738
BstNI	CCWGG	1 cut(s)	750
BstSCI	CCNGG	3 cut(s)	72, 220, 748
BstSNI	TACGTA	1 cut(s)	555
BstV1I	GCAGC	4 cut(s)	59, 204, 292, 345
BstV2I	GAAGAC	1 cut(s)	161
BstX2I	RGATCY	1 cut(s)	15
BstXI	CCANNNNNNTGG	1 cut(s)	516
BstYI	RGATCY	1 cut(s)	15
BsuI	GTATCC	1 cut(s)	218
BsuRI	GGCC	5 cut(s)	5, 40, 233, 523, 732
BtgZI	GCGATG	1 cut(s)	73
BtsCI	GGATG	5 cut(s)	19, 61, 184, 496, 874
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	2 cut(s)	162, 285
BveI	ACCTGC	1 cut(s)	229
Cac8I	GCNNGC	2 cut(s)	7, 297
CfoI	GCGC	1 cut(s)	11
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	4 cut(s)	145, 521, 730, 769
CseI	GACGC	1 cut(s)	323
Csp6I	GTAC	3 cut(s)	590, 614, 641
CviAII	CATG	3 cut(s)	527, 672, 861
CviQI	GTAC	3 cut(s)	590, 614, 641
DdeI	CTNAG	3 cut(s)	209, 291, 773
DpnI	GATC	3 cut(s)	17, 429, 561
DpnII	GATC	3 cut(s)	15, 427, 559
DraIII	CACNNNGTG	1 cut(s)	470
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
EciI	GGCGGA	1 cut(s)	54
Eco105I	TACGTA	1 cut(s)	555
Eco147I	AGGCCT	1 cut(s)	233
Eco47I	GGWCC	2 cut(s)	145, 769
Eco57I	CTGAAG	1 cut(s)	305
EcoO109I	RGGNCCY	2 cut(s)	730, 769
EcoRII	CCWGG	1 cut(s)	748
FaeI	CATG	3 cut(s)	530, 675, 864
FalI	AAGNNNNNCTT	2 cut(s)	303, 335
FatI	CATG	3 cut(s)	526, 671, 860
FauI	CCCGC	1 cut(s)	52
FauNDI	CATATG	1 cut(s)	565
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	7 cut(s)	48, 51, 54, 68, 218, 306, 359
FokI	GGATG	5 cut(s)	6, 48, 191, 483, 881
Fsp4HI	GCNGC	7 cut(s)	48, 51, 54, 68, 218, 306, 359
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	7 cut(s)	48, 51, 54, 68, 218, 306, 359
GsaI	CCCAGC	1 cut(s)	15
GsuI	CTGGAG	1 cut(s)	570
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	5 cut(s)	5, 40, 233, 523, 732
HapII	CCGG	3 cut(s)	6, 74, 221
HgaI	GACGC	1 cut(s)	323
HhaI	GCGC	1 cut(s)	11
Hin1I	GRCGYC	1 cut(s)	315
Hin1II	CATG	3 cut(s)	530, 675, 864
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HincII	GTYRAC	2 cut(s)	115, 244
HindII	GTYRAC	2 cut(s)	115, 244
HinfI	GANTC	3 cut(s)	338, 344, 382
HpaII	CCGG	3 cut(s)	6, 74, 221
HphI	GGTGA	2 cut(s)	95, 467
Hpy166II	GTNNAC	3 cut(s)	115, 244, 437
Hpy188I	TCNGA	2 cut(s)	343, 651
Hpy188III	TCNNGA	2 cut(s)	173, 208
Hpy8I	GTNNAC	3 cut(s)	115, 244, 437
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	4 cut(s)	178, 329, 343, 760
HpyCH4III	ACNGT	1 cut(s)	793
HpyCH4IV	ACGT	2 cut(s)	554, 854
HpyCH4V	TGCA	3 cut(s)	361, 598, 675
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 296, 305, 314, 738
HpyF3I	CTNAG	3 cut(s)	209, 291, 773
HpySE526I	ACGT	2 cut(s)	554, 854
Hsp92I	GRCGYC	1 cut(s)	315
Hsp92II	CATG	3 cut(s)	530, 675, 864
HspAI	GCGC	1 cut(s)	9
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
Kzo9I	GATC	3 cut(s)	15, 427, 559
LmnI	GCTCC	4 cut(s)	61, 89, 97, 544
Lsp1109I	GCAGC	4 cut(s)	59, 204, 292, 345
LweI	GCATC	1 cut(s)	859
MaeII	ACGT	2 cut(s)	554, 854
MaeIII	GTNAC	2 cut(s)	133, 455
MalI	GATC	3 cut(s)	17, 429, 561
MbiI	CCGCTC	1 cut(s)	56
MboI	GATC	3 cut(s)	15, 427, 559
MboII	GAAGA	5 cut(s)	152, 161, 388, 391, 731
MflI	RGATCY	1 cut(s)	15
MluCI	AATT	2 cut(s)	402, 722
MroNI	GCCGGC	1 cut(s)	5
MseI	TTAA	3 cut(s)	393, 711, 756
MslI	CAYNNNNRTG	1 cut(s)	368
MspI	CCGG	3 cut(s)	6, 74, 221
MspR9I	CCNGG	3 cut(s)	74, 222, 750
MvaI	CCWGG	1 cut(s)	750
MwoI	GCNNNNNNNGC	5 cut(s)	53, 296, 305, 314, 738
NaeI	GCCGGC	1 cut(s)	7
NciI	CCSGG	2 cut(s)	74, 222
NdeI	CATATG	1 cut(s)	565
NdeII	GATC	3 cut(s)	15, 427, 559
NgoMIV	GCCGGC	1 cut(s)	5
NlaIII	CATG	3 cut(s)	530, 675, 864
NlaIV	GGNNCC	5 cut(s)	17, 85, 522, 540, 731
NmuCI	GTSAC	1 cut(s)	455
PceI	AGGCCT	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	1 cut(s)	371
PdiI	GCCGGC	1 cut(s)	7
PfeI	GAWTC	3 cut(s)	338, 344, 382
PflMI	CCANNNNNTGG	1 cut(s)	569
PkrI	GCNGC	7 cut(s)	49, 52, 55, 69, 219, 307, 360
Ppu21I	YACGTR	1 cut(s)	555
PpuMI	RGGWCCY	1 cut(s)	769
PshBI	ATTAAT	1 cut(s)	711
Psp5II	RGGWCCY	1 cut(s)	769
Psp6I	CCWGG	1 cut(s)	748
PspFI	CCCAGC	1 cut(s)	11
PspGI	CCWGG	1 cut(s)	748
PspN4I	GGNNCC	5 cut(s)	17, 85, 522, 540, 731
PspPI	GGNCC	4 cut(s)	145, 521, 730, 769
PspPPI	RGGWCCY	1 cut(s)	769
PsuI	RGATCY	1 cut(s)	15
RsaI	GTAC	3 cut(s)	591, 615, 642
RsaNI	GTAC	3 cut(s)	590, 614, 641
RseI	CAYNNNNRTG	1 cut(s)	368
SalI	GTCGAC	1 cut(s)	113
SaqAI	TTAA	3 cut(s)	393, 711, 756
SatI	GCNGC	7 cut(s)	48, 51, 54, 68, 218, 306, 359
Sau3AI	GATC	3 cut(s)	15, 427, 559
Sau96I	GGNCC	4 cut(s)	145, 521, 730, 769
ScrFI	CCNGG	3 cut(s)	74, 222, 750
SfaNI	GCATC	1 cut(s)	859
SinI	GGWCC	2 cut(s)	145, 769
SmiMI	CAYNNNNRTG	1 cut(s)	368
SnaBI	TACGTA	1 cut(s)	555
Sse9I	AATT	2 cut(s)	402, 722
SseBI	AGGCCT	1 cut(s)	233
SsiI	CCGC	7 cut(s)	45, 51, 54, 65, 68, 148, 353
SspI	AATATT	1 cut(s)	823
StuI	AGGCCT	1 cut(s)	233
StyD4I	CCNGG	3 cut(s)	72, 220, 748
TaaI	ACNGT	1 cut(s)	793
TaiI	ACGT	2 cut(s)	557, 857
TaqI	TCGA	3 cut(s)	114, 336, 347
TasI	AATT	2 cut(s)	402, 722
TauI	GCSGC	3 cut(s)	53, 56, 70
TfiI	GAWTC	3 cut(s)	338, 344, 382
Tru1I	TTAA	3 cut(s)	393, 711, 756
Tru9I	TTAA	3 cut(s)	393, 711, 756
TscAI	CASTG	2 cut(s)	169, 292
TseFI	GTSAC	1 cut(s)	455
TseI	GCWGC	4 cut(s)	47, 217, 305, 358
Tsp45I	GTSAC	1 cut(s)	455
TspDTI	ATGAA	5 cut(s)	148, 485, 779, 790, 849
TspGWI	ACGGA	1 cut(s)	380
TspRI	CASTG	2 cut(s)	169, 292
Van91I	CCANNNNNTGG	1 cut(s)	569
VpaK11BI	GGWCC	2 cut(s)	145, 769
VspI	ATTAAT	1 cut(s)	711
XmiI	GTMKAC	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.