RLG00000020483

U1 small nuclear ribonucleoprotein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
65504130 .. 65509539
5410 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020483

Sequence Viewer

Length: 1023 bp
ATGGCCGGTGCGGGAATCCACCCCTACCACCAGCAATGGGCGCCGGCAGCCGCCCCGCCTCCTCCTCCGGCCGTCGTCGCCGCCGCCCCTCCGCCTCCACCTCACCACCTCGTCGACAACCCGAACCGACCCGCCAACGACGAGGTCCGCACCATTTTCATCACCGGTCTTCCTGAAGATGTGAAGGAGAGGGAGATACAGAACCTCCTCCGATGGCTGCCGGGCTACGAGGCCTCCCAGGTCAACTACAAAGGCGAGAAGCCCATGAGCTTCGCGCTCTTCGCCACTGCTCAGCAAGCTATCGCTGCCAAAGACGCTCTTCAGTTAATGTTTTGGTTTCTAACTAAATTTGATAGTGGAAACAAGAAGTTGGGGATTGTAGGGGATTCAAATGCTTATGATCAAAGTAAACGATTGCGTACTGGTGACTACACACAGGCTGGTTATTCCAGTCCAGTGCCTTTTCATCCTCCACCGCCACCTGTTTGGGGACCACACGGGTATATGGCTCCACCACCTCCTCCATATGATCCATATGGTTATCCTGTTGCTCCAGTACCAATGCCCCCTTCTGCTCCTGTACCAGCACCCAGCAGTTATGTACCTGTTCTGAACACAAAAGATAATCCACCATGCAATACCTTATTTATTGGCAATCTAGGAGAGAGCATTAATGAGGAAGAACTGAGGGGCCTATTCAGCTCACAACCTGGATTTAAGCAAATGAAGATCTTGAGACAGGAAAGGCATACTGTTTGCTTCATTGAGTTTGAAGATGTAAACAGTGCCACTGCTGTACACCACAATTTTCAAGGTGCTGTTATCCCCAGTTCTGGTTCTATAGGCATGAGAATACAATATCCTTTTATTACTTTGTTATCACTGATCCTTTTGAACCCATTTGGTAAAAGGAAAGATGGGAACTACCCTGGTGCTGTCCCTTCTGCAAATGGAGCTCCACCAGCTATGACATACCATTACACCAGAGAATGTAGGAGATTAAACTATGGGAAAGAAAGCTGA

Protein Analysis

341

Amino Acids

37.25

Weight (kDa)

7.75

Isoelectric Point (pI)

66.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 215 - 276 7.3e-10 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 40
AccI GTMKAC 1 cut(s) 114
AccII CGCG 1 cut(s) 275
AciI CCGC 9 cut(s) 11, 51, 56, 81, 84, 92, 132, 148, 476
AclWI GGATC 2 cut(s) 524, 880
AcoI YGGCCR 2 cut(s) 3, 69
AcsI RAATTY 1 cut(s) 347
AcuI CTGAAG 2 cut(s) 195, 305
AcyI GRCGYC 1 cut(s) 41
AfaI GTAC 5 cut(s) 421, 558, 582, 603, 798
AfiI CCNNNNNNNGG 3 cut(s) 37, 488, 833
AgeI ACCGGT 1 cut(s) 164
AgsI TTSAA 4 cut(s) 390, 773, 812, 895
AjnI CCWGG 3 cut(s) 237, 709, 928
AjuI GAANNNNNNNTTGG 2 cut(s) 553, 585
AluBI AGCT 6 cut(s) 270, 299, 702, 956, 965, 1020
AluI AGCT 6 cut(s) 270, 299, 702, 956, 965, 1020
Alw21I GWGCWC 1 cut(s) 958
Alw26I GTCTC 1 cut(s) 730
AlwI GGATC 2 cut(s) 524, 880
AoxI GGCC 4 cut(s) 3, 69, 231, 691
ApeKI GCWGC 3 cut(s) 47, 217, 305
ApoI RAATTY 1 cut(s) 347
AseI ATTAAT 1 cut(s) 672
AsiGI ACCGGT 1 cut(s) 164
AspLEI GCGC 2 cut(s) 43, 277
AspS9I GGNCC 3 cut(s) 145, 491, 691
AsuC2I CCSGG 1 cut(s) 222
AsuHPI GGTGA 3 cut(s) 95, 154, 437
AvaII GGWCC 2 cut(s) 145, 491
BanI GGYRCC 1 cut(s) 40
BanII GRGCYC 1 cut(s) 958
BbsI GAAGAC 1 cut(s) 161
Bbv12I GWGCWC 1 cut(s) 958
BbvI GCAGC 3 cut(s) 59, 204, 292
BccI CCATC 2 cut(s) 207, 911
BceAI ACGGC 1 cut(s) 56
BciT130I CCWGG 3 cut(s) 239, 711, 930
BclI TGATCA 1 cut(s) 400
BcnI CCSGG 1 cut(s) 222
BcoDI GTCTC 1 cut(s) 730
BfaI CTAG 1 cut(s) 659
BfmI CTRYAG 1 cut(s) 840
BfoI RGCGCY 1 cut(s) 44
BglII AGATCT 1 cut(s) 729
BisI GCNGC 6 cut(s) 48, 51, 81, 84, 218, 306
BlpI GCTNAGC 1 cut(s) 291
BlsI GCNGC 6 cut(s) 49, 52, 82, 85, 219, 307
Bme1390I CCNGG 4 cut(s) 222, 239, 711, 930
Bme18I GGWCC 2 cut(s) 145, 491
BmgT120I GGNCC 3 cut(s) 145, 491, 691
BmiI GGNNCC 4 cut(s) 42, 492, 510, 692
BmrFI CCNGG 4 cut(s) 222, 239, 711, 930
BmrI ACTGGG 1 cut(s) 822
BmuI ACTGGG 1 cut(s) 822
BpiI GAAGAC 1 cut(s) 161
BpmI CTGGAG 1 cut(s) 537
Bpu1102I GCTNAGC 1 cut(s) 291
BpuEI CTTGAG 1 cut(s) 754
BpuMI CCSGG 1 cut(s) 222
BsaHI GRCGYC 1 cut(s) 41
BsaJI CCNNGG 2 cut(s) 237, 928
BsaWI WCCGGW 1 cut(s) 164
BsaXI ACNNNNNCTCC 4 cut(s) 189, 218, 219, 248
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 488, 833
Bse118I RCCGGY 3 cut(s) 5, 43, 164
Bse1I ACTGG 5 cut(s) 427, 450, 455, 554, 828
Bse3DI GCAATG 1 cut(s) 41
BseBI CCWGG 3 cut(s) 239, 711, 930
BseDI CCNNGG 2 cut(s) 237, 928
BseGI GGATG 1 cut(s) 466
BseLI CCNNNNNNNGG 3 cut(s) 37, 488, 833
BseMI GCAATG 1 cut(s) 41
BseMII CTCAG 2 cut(s) 305, 677
BseNI ACTGG 5 cut(s) 427, 450, 455, 554, 828
BseRI GAGGAG 4 cut(s) 51, 54, 197, 510
BseX3I CGGCCG 1 cut(s) 69
BseXI GCAGC 3 cut(s) 59, 204, 292
BseYI CCCAGC 1 cut(s) 590
Bsh1236I CGCG 1 cut(s) 275
Bsh1285I CGRYCG 1 cut(s) 72
BshFI GGCC 4 cut(s) 5, 71, 233, 693
BshNI GGYRCC 1 cut(s) 40
BshTI ACCGGT 1 cut(s) 164
BsiEI CGRYCG 1 cut(s) 72
BsiHKAI GWGCWC 1 cut(s) 958
BsiSI CCGG 5 cut(s) 6, 44, 68, 165, 221
BslFI GGGAC 2 cut(s) 504, 923
BslI CCNNNNNNNGG 3 cut(s) 37, 488, 833
BsmAI GTCTC 1 cut(s) 730
BsmFI GGGAC 2 cut(s) 504, 923
BsnI GGCC 4 cut(s) 5, 71, 233, 693
Bsp1286I GDGCHC 1 cut(s) 958
Bsp1407I TGTACA 1 cut(s) 796
Bsp143I GATC 4 cut(s) 400, 529, 729, 885
Bsp1720I GCTNAGC 1 cut(s) 291
BspACI CCGC 9 cut(s) 11, 51, 56, 81, 84, 92, 132, 148, 476
BspANI GGCC 4 cut(s) 5, 71, 233, 693
BspCNI CTCAG 2 cut(s) 304, 678
BspFNI CGCG 1 cut(s) 275
BspLI GGNNCC 4 cut(s) 42, 492, 510, 692
BspPI GGATC 2 cut(s) 524, 880
BspQI GCTCTTC 2 cut(s) 284, 324
BspT107I GGYRCC 1 cut(s) 40
BsrDI GCAATG 1 cut(s) 41
BsrFI RCCGGY 3 cut(s) 5, 43, 164
BsrGI TGTACA 1 cut(s) 796
BsrI ACTGG 5 cut(s) 427, 450, 455, 554, 828
BssAI RCCGGY 3 cut(s) 5, 43, 164
BssECI CCNNGG 2 cut(s) 237, 928
BssMI GATC 4 cut(s) 400, 529, 729, 885
BssNI GRCGYC 1 cut(s) 41
Bst2UI CCWGG 3 cut(s) 239, 711, 930
Bst4CI ACNGT 2 cut(s) 754, 785
Bst6I CTCTTC 2 cut(s) 284, 324
BstACI GRCGYC 1 cut(s) 41
BstAUI TGTACA 1 cut(s) 796
BstC8I GCNNGC 2 cut(s) 45, 297
BstDEI CTNAG 2 cut(s) 291, 686
BstF5I GGATG 1 cut(s) 466
BstFNI CGCG 1 cut(s) 275
BstH2I RGCGCY 1 cut(s) 44
BstHHI GCGC 2 cut(s) 43, 277
BstKTI GATC 4 cut(s) 403, 532, 732, 888
BstMAI GTCTC 1 cut(s) 730
BstMBI GATC 4 cut(s) 400, 529, 729, 885
BstMCI CGRYCG 1 cut(s) 72
BstNI CCWGG 3 cut(s) 239, 711, 930
BstSCI CCNGG 4 cut(s) 220, 237, 709, 928
BstSFI CTRYAG 1 cut(s) 840
BstUI CGCG 1 cut(s) 275
BstV1I GCAGC 3 cut(s) 59, 204, 292
BstV2I GAAGAC 1 cut(s) 161
BstX2I RGATCY 1 cut(s) 729
BstXI CCANNNNNNTGG 1 cut(s) 486
BstYI RGATCY 1 cut(s) 729
BstZI CGGCCG 1 cut(s) 69
BsuRI GGCC 4 cut(s) 5, 71, 233, 693
BtsCI GGATG 1 cut(s) 466
BtsI GCAGTG 2 cut(s) 285, 789
BtsIMutI CAGTG 5 cut(s) 285, 462, 789, 790, 881
Cac8I GCNNGC 2 cut(s) 45, 297
CfoI GCGC 2 cut(s) 43, 277
Cfr10I RCCGGY 3 cut(s) 5, 43, 164
Cfr13I GGNCC 3 cut(s) 145, 491, 691
CseI GACGC 1 cut(s) 323
Csp6I GTAC 5 cut(s) 420, 557, 581, 602, 797
CspAI ACCGGT 1 cut(s) 164
CviAII CATG 3 cut(s) 265, 633, 847
CviQI GTAC 5 cut(s) 420, 557, 581, 602, 797
DdeI CTNAG 2 cut(s) 291, 686
DinI GGCGCC 1 cut(s) 42
DpnI GATC 4 cut(s) 402, 531, 731, 887
DpnII GATC 4 cut(s) 400, 529, 729, 885
EaeI YGGCCR 2 cut(s) 3, 69
EagI CGGCCG 1 cut(s) 69
Eam1104I CTCTTC 2 cut(s) 284, 324
EarI CTCTTC 2 cut(s) 284, 324
EciI GGCGGA 1 cut(s) 81
Ecl136II GAGCTC 1 cut(s) 956
EclXI CGGCCG 1 cut(s) 69
Eco147I AGGCCT 1 cut(s) 233
Eco24I GRGCYC 1 cut(s) 958
Eco47I GGWCC 2 cut(s) 145, 491
Eco52I CGGCCG 1 cut(s) 69
Eco53kI GAGCTC 1 cut(s) 956
Eco57I CTGAAG 2 cut(s) 195, 305
EcoICRI GAGCTC 1 cut(s) 956
EcoO109I RGGNCCY 1 cut(s) 691
EcoRII CCWGG 3 cut(s) 237, 709, 928
EcoT38I GRGCYC 1 cut(s) 958
EgeI GGCGCC 1 cut(s) 42
EheI GGCGCC 1 cut(s) 42
FaeI CATG 3 cut(s) 268, 636, 850
FalI AAGNNNNNCTT 2 cut(s) 303, 335
FaqI GGGAC 2 cut(s) 504, 923
FatI CATG 3 cut(s) 264, 632, 846
FauI CCCGC 3 cut(s) 4, 63, 139
FauNDI CATATG 2 cut(s) 526, 535
FbaI TGATCA 1 cut(s) 400
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 6 cut(s) 48, 51, 81, 84, 218, 306
FokI GGATG 1 cut(s) 453
FriOI GRGCYC 1 cut(s) 958
Fsp4HI GCNGC 6 cut(s) 48, 51, 81, 84, 218, 306
FspBI CTAG 1 cut(s) 659
GlaI GCGC 2 cut(s) 42, 276
GluI GCNGC 6 cut(s) 48, 51, 81, 84, 218, 306
GsaI CCCAGC 1 cut(s) 594
GsuI CTGGAG 1 cut(s) 537
HaeII RGCGCY 1 cut(s) 44
HaeIII GGCC 4 cut(s) 5, 71, 233, 693
HapII CCGG 5 cut(s) 6, 44, 68, 165, 221
HgaI GACGC 1 cut(s) 323
HhaI GCGC 2 cut(s) 43, 277
Hin1I GRCGYC 1 cut(s) 41
Hin1II CATG 3 cut(s) 268, 636, 850
Hin6I GCGC 2 cut(s) 41, 275
HinP1I GCGC 2 cut(s) 41, 275
HincII GTYRAC 2 cut(s) 115, 244
HindII GTYRAC 2 cut(s) 115, 244
HinfI GANTC 2 cut(s) 15, 386
HpaII CCGG 5 cut(s) 6, 44, 68, 165, 221
HphI GGTGA 3 cut(s) 95, 154, 437
Hpy166II GTNNAC 5 cut(s) 115, 244, 410, 781, 799
Hpy188I TCNGA 2 cut(s) 212, 612
Hpy188III TCNNGA 2 cut(s) 173, 733
Hpy8I GTNNAC 5 cut(s) 115, 244, 410, 781, 799
Hpy99I CGWCG 4 cut(s) 77, 80, 116, 143
HpyAV CCTTC 3 cut(s) 178, 579, 951
HpyCH4III ACNGT 2 cut(s) 754, 785
HpyCH4V TGCA 2 cut(s) 636, 947
HpyF3I CTNAG 2 cut(s) 291, 686
Hsp92I GRCGYC 1 cut(s) 41
Hsp92II CATG 3 cut(s) 268, 636, 850
HspAI GCGC 2 cut(s) 41, 275
KasI GGCGCC 1 cut(s) 40
KroI GCCGGC 1 cut(s) 43
KroNI GCCGGC 1 cut(s) 45
Ksp22I TGATCA 1 cut(s) 400
Kzo9I GATC 4 cut(s) 400, 529, 729, 885
LguI GCTCTTC 2 cut(s) 284, 324
LmnI GCTCC 5 cut(s) 514, 556, 580, 953, 961
Lsp1109I GCAGC 3 cut(s) 59, 204, 292
MaeI CTAG 1 cut(s) 659
MaeIII GTNAC 1 cut(s) 425
MalI GATC 4 cut(s) 402, 531, 731, 887
MboI GATC 4 cut(s) 400, 529, 729, 885
MboII GAAGA 7 cut(s) 161, 188, 271, 311, 692, 739, 785
MflI RGATCY 1 cut(s) 729
MhlI GDGCHC 1 cut(s) 958
MluCI AATT 2 cut(s) 347, 805
Mly113I GGCGCC 1 cut(s) 41
MroNI GCCGGC 1 cut(s) 43
MseI TTAA 4 cut(s) 326, 672, 717, 1001
MspI CCGG 5 cut(s) 6, 44, 68, 165, 221
MspR9I CCNGG 4 cut(s) 222, 239, 711, 930
MvaI CCWGG 3 cut(s) 239, 711, 930
MvnI CGCG 1 cut(s) 275
NaeI GCCGGC 1 cut(s) 45
NarI GGCGCC 1 cut(s) 41
NciI CCSGG 1 cut(s) 222
NdeI CATATG 2 cut(s) 526, 535
NdeII GATC 4 cut(s) 400, 529, 729, 885
NgoMIV GCCGGC 1 cut(s) 43
NlaIII CATG 3 cut(s) 268, 636, 850
NlaIV GGNNCC 4 cut(s) 42, 492, 510, 692
NmuCI GTSAC 1 cut(s) 425
PceI AGGCCT 1 cut(s) 233
PciSI GCTCTTC 2 cut(s) 284, 324
PdiI GCCGGC 1 cut(s) 45
PfeI GAWTC 2 cut(s) 15, 386
PflFI GACNNNGTC 1 cut(s) 143
PinAI ACCGGT 1 cut(s) 164
PkrI GCNGC 6 cut(s) 49, 52, 82, 85, 219, 307
PluTI GGCGCC 1 cut(s) 44
PshBI ATTAAT 1 cut(s) 672
Psp124BI GAGCTC 1 cut(s) 958
Psp6I CCWGG 3 cut(s) 237, 709, 928
PspFI CCCAGC 1 cut(s) 590
PspGI CCWGG 3 cut(s) 237, 709, 928
PspN4I GGNNCC 4 cut(s) 42, 492, 510, 692
PspPI GGNCC 3 cut(s) 145, 491, 691
PsuI RGATCY 1 cut(s) 729
PsyI GACNNNGTC 1 cut(s) 143
RsaI GTAC 5 cut(s) 421, 558, 582, 603, 798
RsaNI GTAC 5 cut(s) 420, 557, 581, 602, 797
SacI GAGCTC 1 cut(s) 958
SalI GTCGAC 1 cut(s) 113
SapI GCTCTTC 2 cut(s) 284, 324
SaqAI TTAA 4 cut(s) 326, 672, 717, 1001
SatI GCNGC 6 cut(s) 48, 51, 81, 84, 218, 306
Sau3AI GATC 4 cut(s) 400, 529, 729, 885
Sau96I GGNCC 3 cut(s) 145, 491, 691
ScrFI CCNGG 4 cut(s) 222, 239, 711, 930
SduI GDGCHC 1 cut(s) 958
SfcI CTRYAG 1 cut(s) 840
SfoI GGCGCC 1 cut(s) 42
SinI GGWCC 2 cut(s) 145, 491
SmlI CTYRAG 1 cut(s) 733
SmoI CTYRAG 1 cut(s) 733
Sse9I AATT 2 cut(s) 347, 805
SseBI AGGCCT 1 cut(s) 233
SsiI CCGC 9 cut(s) 11, 51, 56, 81, 84, 92, 132, 148, 476
SspDI GGCGCC 1 cut(s) 40
SspMI CTAG 1 cut(s) 659
SstI GAGCTC 1 cut(s) 958
StuI AGGCCT 1 cut(s) 233
StyD4I CCNGG 4 cut(s) 220, 237, 709, 928
TaaI ACNGT 2 cut(s) 754, 785
TaqI TCGA 1 cut(s) 114
TasI AATT 2 cut(s) 347, 805
TatI WGTACW 1 cut(s) 796
TauI GCSGC 3 cut(s) 53, 83, 86
TfiI GAWTC 2 cut(s) 15, 386
Tru1I TTAA 4 cut(s) 326, 672, 717, 1001
Tru9I TTAA 4 cut(s) 326, 672, 717, 1001
TscAI CASTG 5 cut(s) 292, 462, 790, 796, 888
TseFI GTSAC 1 cut(s) 425
TseI GCWGC 3 cut(s) 47, 217, 305
Tsp45I GTSAC 1 cut(s) 425
TspDTI ATGAA 4 cut(s) 148, 455, 740, 751
TspRI CASTG 5 cut(s) 292, 462, 790, 796, 888
Tth111I GACNNNGTC 1 cut(s) 143
VpaK11BI GGWCC 2 cut(s) 145, 491
VspI ATTAAT 1 cut(s) 672
XapI RAATTY 1 cut(s) 347
XmiI GTMKAC 1 cut(s) 114
XspI CTAG 1 cut(s) 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.