Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003051

Physical Location & Seq

Genomic Coordinates Reverse (-)

71995493 .. 72005170

Gene Structure 9678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG500300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1608 bp

ATGACAAAATGCATGTCAATTGAAAGGATTGTAGGGGATTCAAATGCTTATGATCAAAGTAAACGATTGCGTACTGGTGACTACACACAGGCTGGTTATTCCAGTCCGGTGCCTTTTCATCCACCACCGCCACCTGTTTGGGGACCGCACGGGTATATGGCTCCACCACCTCCTCCATATGATCCATATGGTTATCCTGTTGCTCCAGTACCAATGCCCCCTTCTGCTCCTGTACCAGCACCCAGCAGTTATGTACCTGTTCTGAACACAAAAGATAATCCACCATGCAATACCTTATTTATTGGCAATCTAGGAGAGAGCATTAACGAGGAAGAACTGAGGGGCCTATTCAGCTCACAACCTGGATTTAAGCAAATGAAGATCTTGCGACAGGAAAGGCATACTGTTTGCTTCATTGAGTTTGAAGATGTAAACAGTGCCACTGCTGTACACCACAATTTTCAAGGTCAAGGTTTTGCAGCTGCCCTTTTGTTTCAGGGTTTTATTCGTAACGAGCATTTTGATCCAAAAAAATGGATTATACCTGGAGACTTTTCTGTACCTTGTTTATTAAAGGAGGAGTTGCTTTCTAGTGAAAGAAAAATCTACATCAGGGGAACAAGAAAGATAAAAAGAAAGCGTATTGCTGATGTTGTTGAGGCACTTATTGGTGCATTCCTTATTACCGGTGGTGAAATGGCTGCTGTGCACTTCATGAATTGGGTTGGTATAAAGGAACTTTCCGTTGCAGCCAGAGAAAAGCTTATTAATGTCAAACATTTAGAGAAGCAACTAAACTACTCATTTCGTGATCCTTCTCTTCTAGTGGAAGCACTAACTCGTGGTTCTTACATTCTCCCTGAGATCCCAGGATGTTTTCAGTTATCTGTACAACAAATATCCTGGGATGTCCCAGGAGTCTTAACTGATATGAGATCTGCTTCGGTAAATAATGATTGTTTTGCCCGAGCGGCTGTGAAGGCTGAATTGCACAAGCACATTCTCCATGCTTCAAAGAAACTCCACAAGGATATAGTTCACACAGTTGATAACTTTAAGAAGTTACCTACACAATCAACTTTTGGATGGGAATCTGAGACTTCGTTCCCCAGGGTAGTAGGAGATATTATAGAGTCTCTTGGAGGGGCAATTTTTGTTGATTCTGGATACGATAAGAATGTTGTATTTCAGAGTATACGTCCTCTGTTAGAGCCCTTGATTACTCCAGAAATGATAACTCTCCATCCTGATAGAGAGCTGAATGAACTTTGTTCAAAAATGCATTATGACAGGAAGAAATCAATATCATTCAAAAATGATATGGCTACCATTACTATTGAGGTTGAAGGTAATGGGGTCACATACAAGCATACATCAACAGCTCTTGATAAGTGGACGGCAAGTAAATTAGCAAGCAAAGAAGTTTTGAGGTCCTTGAAAGAGAGTGCTCATTTATCAAAAGACGCTCTCCCATCTTCAAACAACCCCTTCACCACTCCACAACTCGTTTCCTTCACCAAGTCGACTCAGGAAATGGTTCTAGCCAGTGGAGCAGCAGCAGCAGCTCCCCCAACAGGAAGTGCCGCAGCTGCTGCAAGCATGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009892 GO:0009987 GO:0010033 GO:0010216 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051214 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098542 GO:0098586 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko05206 map05206

Pfam Domains

Protein Families

DEAD Dicer_dimer Helicase_C PAZ ResIII Ribonuclease_3 dsrm

Protein Analysis

535

Amino Acids

59.15

Weight (kDa)

8.3

Isoelectric Point (pI)

47.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	99 - 158	2.2e-09	RNA recognition motif
Ribonuclease_3	PF00636	305 - 389	7.4e-08	Ribonuclease III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21215 AT3G21215 AT3G21215 AT3G21215
fragaria_vesca	FvH4_3g14953 FvH4_3g16432 FvH4_4g15800 FvH4_4g32761 FvH4_5g34521 FvH4_6g16241 FvH4_6g37450 FvH4_6g45392 FvH4_7g15921 FvH4_7g31684
malus_domestica	MD09G1158000.v1.1 MD17G1144000.v1.1
prunus_persica	Prupe.3G168000_v2.0.a1
pyrus_communis	pycom09g07680 pycom17g13730
rosa_chinensis	RchiOBHm_Chr2g0150271 RchiOBHm_Chr2g0150291
rosa_laevigata	RLG00000020483
rosa_multiflora	Rmu_sc0001169.1_g000003 Rmu_sc0020705.1_g000001 Rmu_sc0024000.1_g000001 Rmu_sc0038093.1_g000001 Rmu_sc0040821.1_g000001 Rmu_ssc0000020.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097320 Rroxscaffold_2G00097330
rosa_rugosa	Rorug02G0420200 Rorug02G0420300
rosa_samantha	Rh2AG479200 Rh2BG491500 Rh2CG465400 Rh2DG500300
rosa_wichuraiana	Rw2G038980 Rw2G039110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	109
AccBSI	CCGCTC	1 cut(s)	971
AccI	GTMKAC	2 cut(s)	1195, 1523
AciI	CCGC	4 cut(s)	128, 146, 971, 1584
AclWI	GGATC	4 cut(s)	176, 518, 806, 859
AfaI	GTAC	7 cut(s)	73, 210, 234, 255, 450, 561, 891
AfiI	CCNNNNNNNGG	2 cut(s)	140, 1574
AgeI	ACCGGT	1 cut(s)	686
AjnI	CCWGG	6 cut(s)	361, 544, 868, 902, 913, 1109
AjuI	GAANNNNNNNTTGG	2 cut(s)	205, 237
AluBI	AGCT	7 cut(s)	354, 482, 763, 1258, 1382, 1565, 1589
AluI	AGCT	7 cut(s)	354, 482, 763, 1258, 1382, 1565, 1589
Alw21I	GWGCWC	2 cut(s)	711, 1450
Alw26I	GTCTC	3 cut(s)	543, 1091, 1140
Alw44I	GTGCAC	1 cut(s)	707
AlwI	GGATC	4 cut(s)	176, 518, 806, 859
AlwNI	CAGNNNCTG	1 cut(s)	1592
Ama87I	CYCGRG	1 cut(s)	966
AoxI	GGCC	1 cut(s)	343
ApaLI	GTGCAC	1 cut(s)	707
ArsI	GACNNNNNNTTYG	1 cut(s)	31
AseI	ATTAAT	1 cut(s)	768
AsiGI	ACCGGT	1 cut(s)	686
Asp700I	GAANNNNTTC	1 cut(s)	1536
AspLEI	GCGC	1 cut(s)	1605
AspS9I	GGNCC	3 cut(s)	143, 343, 1431
AsuHPI	GGTGA	4 cut(s)	89, 704, 1483, 1507
AvaI	CYCGRG	1 cut(s)	966
AvaII	GGWCC	2 cut(s)	143, 1431
BaeGI	GKGCMC	1 cut(s)	711
BanI	GGYRCC	1 cut(s)	109
BanII	GRGCYC	1 cut(s)	1215
BauI	CACGAG	1 cut(s)	840
Bbv12I	GWGCWC	2 cut(s)	711, 1450
BccI	CCATC	3 cut(s)	1080, 1251, 1480
BceAI	ACGGC	1 cut(s)	1413
BciT130I	CCWGG	6 cut(s)	363, 546, 870, 904, 915, 1111
BciVI	GTATCC	1 cut(s)	1160
BclI	TGATCA	1 cut(s)	52
BcoDI	GTCTC	3 cut(s)	543, 1091, 1140
BfaI	CTAG	4 cut(s)	311, 591, 824, 1541
BfuI	GTATCC	1 cut(s)	1160
BglI	GCCNNNNNGGC	1 cut(s)	971
BglII	AGATCT	2 cut(s)	381, 935
Bme1390I	CCNGG	6 cut(s)	363, 546, 870, 904, 915, 1111
Bme18I	GGWCC	2 cut(s)	143, 1431
BmeT110I	CYCGRG	1 cut(s)	966
BmgT120I	GGNCC	3 cut(s)	143, 343, 1431
BmiI	GGNNCC	4 cut(s)	111, 144, 162, 344
BmrFI	CCNGG	6 cut(s)	363, 546, 870, 904, 915, 1111
BpmI	CTGGAG	3 cut(s)	189, 567, 1209
BsaBI	GATNNNNATC	1 cut(s)	1090
BsaJI	CCNNGG	5 cut(s)	868, 903, 913, 1109, 1110
BsaWI	WCCGGW	2 cut(s)	106, 686
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 1574
Bse118I	RCCGGY	1 cut(s)	686
Bse1I	ACTGG	4 cut(s)	79, 102, 206, 1545
Bse8I	GATNNNNATC	1 cut(s)	1090
BseBI	CCWGG	6 cut(s)	363, 546, 870, 904, 915, 1111
BseDI	CCNNGG	5 cut(s)	868, 903, 913, 1109, 1110
BseGI	GGATG	5 cut(s)	118, 878, 913, 1091, 1243
BseJI	GATNNNNATC	1 cut(s)	1090
BseLI	CCNNNNNNNGG	2 cut(s)	140, 1574
BseMII	CTCAG	4 cut(s)	329, 852, 1086, 1541
BseNI	ACTGG	4 cut(s)	79, 102, 206, 1545
BseRI	GAGGAG	2 cut(s)	162, 593
BseSI	GKGCMC	1 cut(s)	711
BseYI	CCCAGC	1 cut(s)	242
BshFI	GGCC	1 cut(s)	345
BshNI	GGYRCC	1 cut(s)	109
BshTI	ACCGGT	1 cut(s)	686
BsiHKAI	GWGCWC	2 cut(s)	711, 1450
BsiHKCI	CYCGRG	1 cut(s)	966
BsiSI	CCGG	2 cut(s)	107, 687
BslFI	GGGAC	2 cut(s)	156, 896
BslI	CCNNNNNNNGG	2 cut(s)	140, 1574
BsmAI	GTCTC	3 cut(s)	543, 1091, 1140
BsmFI	GGGAC	2 cut(s)	156, 896
BsmI	GAATGC	1 cut(s)	674
BsnI	GGCC	1 cut(s)	345
BsoBI	CYCGRG	1 cut(s)	966
Bsp1286I	GDGCHC	3 cut(s)	711, 1215, 1450
Bsp1407I	TGTACA	2 cut(s)	448, 889
Bsp143I	GATC	7 cut(s)	52, 181, 381, 523, 811, 864, 935
BspACI	CCGC	4 cut(s)	128, 146, 971, 1584
BspANI	GGCC	1 cut(s)	345
BspCNI	CTCAG	4 cut(s)	330, 853, 1087, 1540
BspHI	TCATGA	1 cut(s)	714
BspLI	GGNNCC	4 cut(s)	111, 144, 162, 344
BspPI	GGATC	4 cut(s)	176, 518, 806, 859
BspT107I	GGYRCC	1 cut(s)	109
BsrBI	CCGCTC	1 cut(s)	971
BsrFI	RCCGGY	1 cut(s)	686
BsrGI	TGTACA	2 cut(s)	448, 889
BsrI	ACTGG	4 cut(s)	79, 102, 206, 1545
BssAI	RCCGGY	1 cut(s)	686
BssECI	CCNNGG	5 cut(s)	868, 903, 913, 1109, 1110
BssMI	GATC	7 cut(s)	52, 181, 381, 523, 811, 864, 935
BssNAI	GTATAC	1 cut(s)	1196
BssSI	CACGAG	1 cut(s)	840
Bst1107I	GTATAC	1 cut(s)	1196
Bst2BI	CACGAG	1 cut(s)	840
Bst2UI	CCWGG	6 cut(s)	363, 546, 870, 904, 915, 1111
Bst4CI	ACNGT	3 cut(s)	406, 437, 1045
Bst6I	CTCTTC	1 cut(s)	825
BstAPI	GCANNNNNTGC	1 cut(s)	1592
BstAUI	TGTACA	2 cut(s)	448, 889
BstC8I	GCNNGC	3 cut(s)	1414, 1597, 1601
BstDEI	CTNAG	4 cut(s)	338, 861, 1095, 1527
BstF5I	GGATG	5 cut(s)	118, 878, 913, 1091, 1243
BstHHI	GCGC	1 cut(s)	1605
BstKTI	GATC	7 cut(s)	55, 184, 384, 526, 814, 867, 938
BstMAI	GTCTC	3 cut(s)	543, 1091, 1140
BstMBI	GATC	7 cut(s)	52, 181, 381, 523, 811, 864, 935
BstMWI	GCNNNNNNNGC	8 cut(s)	351, 971, 980, 1550, 1559, 1562, 1589, 1592
BstNI	CCWGG	6 cut(s)	363, 546, 870, 904, 915, 1111
BstNSI	RCATGY	2 cut(s)	16, 1603
BstSCI	CCNGG	6 cut(s)	361, 544, 868, 902, 913, 1109
BstSLI	GKGCMC	1 cut(s)	711
BstX2I	RGATCY	3 cut(s)	381, 864, 935
BstXI	CCANNNNNNTGG	2 cut(s)	138, 534
BstYI	RGATCY	3 cut(s)	381, 864, 935
BstZ17I	GTATAC	1 cut(s)	1196
BsuI	GTATCC	1 cut(s)	1160
BsuRI	GGCC	1 cut(s)	345
BtsCI	GGATG	5 cut(s)	118, 878, 913, 1091, 1243
BtsI	GCAGTG	1 cut(s)	441
BtsIMutI	CAGTG	3 cut(s)	441, 442, 1552
Cac8I	GCNNGC	3 cut(s)	1414, 1597, 1601
CaiI	CAGNNNCTG	1 cut(s)	1592
CciI	TCATGA	1 cut(s)	714
CfoI	GCGC	1 cut(s)	1605
Cfr10I	RCCGGY	1 cut(s)	686
Cfr13I	GGNCC	3 cut(s)	143, 343, 1431
CseI	GACGC	1 cut(s)	1472
Csp6I	GTAC	7 cut(s)	72, 209, 233, 254, 449, 560, 890
CspAI	ACCGGT	1 cut(s)	686
CviAII	CATG	5 cut(s)	13, 285, 715, 1007, 1600
CviQI	GTAC	7 cut(s)	72, 209, 233, 254, 449, 560, 890
DdeI	CTNAG	4 cut(s)	338, 861, 1095, 1527
DpnI	GATC	7 cut(s)	54, 183, 383, 525, 813, 866, 937
DpnII	GATC	7 cut(s)	52, 181, 381, 523, 811, 864, 935
Eam1104I	CTCTTC	1 cut(s)	825
EarI	CTCTTC	1 cut(s)	825
Eco24I	GRGCYC	1 cut(s)	1215
Eco47I	GGWCC	2 cut(s)	143, 1431
Eco88I	CYCGRG	1 cut(s)	966
EcoO109I	RGGNCCY	2 cut(s)	343, 1431
EcoRII	CCWGG	6 cut(s)	361, 544, 868, 902, 913, 1109
EcoT22I	ATGCAT	2 cut(s)	14, 1284
EcoT38I	GRGCYC	1 cut(s)	1215
FaeI	CATG	5 cut(s)	16, 288, 718, 1010, 1603
FaqI	GGGAC	2 cut(s)	156, 896
FatI	CATG	5 cut(s)	12, 284, 714, 1006, 1599
FauNDI	CATATG	2 cut(s)	178, 187
FbaI	TGATCA	1 cut(s)	52
FblI	GTMKAC	2 cut(s)	1195, 1523
FokI	GGATG	5 cut(s)	105, 885, 920, 1098, 1230
FriOI	GRGCYC	1 cut(s)	1215
FspBI	CTAG	4 cut(s)	311, 591, 824, 1541
GlaI	GCGC	1 cut(s)	1604
GsaI	CCCAGC	1 cut(s)	246
GsuI	CTGGAG	3 cut(s)	189, 567, 1209
HaeIII	GGCC	1 cut(s)	345
HapII	CCGG	2 cut(s)	107, 687
HgaI	GACGC	1 cut(s)	1472
HhaI	GCGC	1 cut(s)	1605
Hin1II	CATG	5 cut(s)	16, 288, 718, 1010, 1603
Hin6I	GCGC	1 cut(s)	1603
HinP1I	GCGC	1 cut(s)	1603
HincII	GTYRAC	1 cut(s)	1524
HindII	GTYRAC	1 cut(s)	1524
HindIII	AAGCTT	1 cut(s)	761
HinfI	GANTC	6 cut(s)	38, 918, 1091, 1133, 1160, 1525
HpaII	CCGG	2 cut(s)	107, 687
HphI	GGTGA	4 cut(s)	89, 704, 1483, 1507
Hpy166II	GTNNAC	8 cut(s)	62, 433, 451, 709, 1039, 1196, 1395, 1524
Hpy188I	TCNGA	3 cut(s)	264, 1096, 1191
Hpy188III	TCNNGA	7 cut(s)	715, 809, 1164, 1226, 1247, 1385, 1529
Hpy8I	GTNNAC	8 cut(s)	62, 433, 451, 709, 1039, 1196, 1395, 1524
HpyAV	CCTTC	6 cut(s)	231, 825, 973, 1340, 1498, 1522
HpyCH4III	ACNGT	3 cut(s)	406, 437, 1045
HpyCH4IV	ACGT	1 cut(s)	1198
HpyCH4V	TGCA	9 cut(s)	12, 288, 479, 674, 709, 749, 991, 1282, 1595
HpyF10VI	GCNNNNNNNGC	8 cut(s)	351, 971, 980, 1550, 1559, 1562, 1589, 1592
HpyF3I	CTNAG	4 cut(s)	338, 861, 1095, 1527
HpySE526I	ACGT	1 cut(s)	1198
Hsp92II	CATG	5 cut(s)	16, 288, 718, 1010, 1603
HspAI	GCGC	1 cut(s)	1603
Ksp22I	TGATCA	1 cut(s)	52
Kzo9I	GATC	7 cut(s)	52, 181, 381, 523, 811, 864, 935
LmnI	GCTCC	5 cut(s)	166, 208, 232, 1550, 1570
MaeI	CTAG	4 cut(s)	311, 591, 824, 1541
MaeII	ACGT	1 cut(s)	1198
MaeIII	GTNAC	4 cut(s)	77, 509, 1062, 1357
MalI	GATC	7 cut(s)	54, 183, 383, 525, 813, 866, 937
MbiI	CCGCTC	1 cut(s)	971
MboI	GATC	7 cut(s)	52, 181, 381, 523, 811, 864, 935
MboII	GAAGA	6 cut(s)	344, 391, 437, 812, 1306, 1467
MfeI	CAATTG	1 cut(s)	18
MflI	RGATCY	3 cut(s)	381, 864, 935
MhlI	GDGCHC	3 cut(s)	711, 1215, 1450
MluCI	AATT	6 cut(s)	18, 457, 718, 986, 1149, 1406
MlyI	GAGTC	3 cut(s)	927, 1142, 1519
Mph1103I	ATGCAT	2 cut(s)	14, 1284
MroXI	GAANNNNTTC	1 cut(s)	1536
MseI	TTAA	6 cut(s)	324, 369, 572, 768, 923, 1056
MspA1I	CMGCKG	2 cut(s)	482, 1589
MspI	CCGG	2 cut(s)	107, 687
MspR9I	CCNGG	6 cut(s)	363, 546, 870, 904, 915, 1111
MunI	CAATTG	1 cut(s)	18
Mva1269I	GAATGC	1 cut(s)	674
MvaI	CCWGG	6 cut(s)	363, 546, 870, 904, 915, 1111
MwoI	GCNNNNNNNGC	8 cut(s)	351, 971, 980, 1550, 1559, 1562, 1589, 1592
NdeI	CATATG	2 cut(s)	178, 187
NdeII	GATC	7 cut(s)	52, 181, 381, 523, 811, 864, 935
NlaIII	CATG	5 cut(s)	16, 288, 718, 1010, 1603
NlaIV	GGNNCC	4 cut(s)	111, 144, 162, 344
NmuCI	GTSAC	2 cut(s)	77, 1357
NsiI	ATGCAT	2 cut(s)	14, 1284
NspI	RCATGY	2 cut(s)	16, 1603
PaeI	GCATGC	1 cut(s)	1603
PagI	TCATGA	1 cut(s)	714
PasI	CCCWGGG	1 cut(s)	1110
PctI	GAATGC	1 cut(s)	674
PdmI	GAANNNNTTC	1 cut(s)	1536
PfeI	GAWTC	3 cut(s)	38, 1091, 1160
PinAI	ACCGGT	1 cut(s)	686
PleI	GAGTC	3 cut(s)	926, 1141, 1519
PpsI	GAGTC	3 cut(s)	926, 1141, 1519
PpuMI	RGGWCCY	1 cut(s)	1431
PshBI	ATTAAT	1 cut(s)	768
Psp5II	RGGWCCY	1 cut(s)	1431
Psp6I	CCWGG	6 cut(s)	361, 544, 868, 902, 913, 1109
PspFI	CCCAGC	1 cut(s)	242
PspGI	CCWGG	6 cut(s)	361, 544, 868, 902, 913, 1109
PspN4I	GGNNCC	4 cut(s)	111, 144, 162, 344
PspPI	GGNCC	3 cut(s)	143, 343, 1431
PspPPI	RGGWCCY	1 cut(s)	1431
PstNI	CAGNNNCTG	1 cut(s)	1592
PsuI	RGATCY	3 cut(s)	381, 864, 935
PvuII	CAGCTG	2 cut(s)	482, 1589
RsaI	GTAC	7 cut(s)	73, 210, 234, 255, 450, 561, 891
RsaNI	GTAC	7 cut(s)	72, 209, 233, 254, 449, 560, 890
SalI	GTCGAC	1 cut(s)	1522
SaqAI	TTAA	6 cut(s)	324, 369, 572, 768, 923, 1056
Sau3AI	GATC	7 cut(s)	52, 181, 381, 523, 811, 864, 935
Sau96I	GGNCC	3 cut(s)	143, 343, 1431
SchI	GAGTC	3 cut(s)	927, 1142, 1519
ScrFI	CCNGG	6 cut(s)	363, 546, 870, 904, 915, 1111
SduI	GDGCHC	3 cut(s)	711, 1215, 1450
SinI	GGWCC	2 cut(s)	143, 1431
SphI	GCATGC	1 cut(s)	1603
Sse9I	AATT	6 cut(s)	18, 457, 718, 986, 1149, 1406
SsiI	CCGC	4 cut(s)	128, 146, 971, 1584
SspMI	CTAG	4 cut(s)	311, 591, 824, 1541
StyD4I	CCNGG	6 cut(s)	361, 544, 868, 902, 913, 1109
TaaI	ACNGT	3 cut(s)	406, 437, 1045
TaiI	ACGT	1 cut(s)	1201
TaqI	TCGA	1 cut(s)	1523
TasI	AATT	6 cut(s)	18, 457, 718, 986, 1149, 1406
TatI	WGTACW	2 cut(s)	448, 889
TauI	GCSGC	2 cut(s)	974, 1586
TfiI	GAWTC	3 cut(s)	38, 1091, 1160
Tru1I	TTAA	6 cut(s)	324, 369, 572, 768, 923, 1056
Tru9I	TTAA	6 cut(s)	324, 369, 572, 768, 923, 1056
TscAI	CASTG	3 cut(s)	442, 448, 1552
TseFI	GTSAC	2 cut(s)	77, 1357
Tsp45I	GTSAC	2 cut(s)	77, 1357
TspDTI	ATGAA	6 cut(s)	107, 392, 403, 703, 731, 1278
TspGWI	ACGGA	1 cut(s)	733
TspRI	CASTG	3 cut(s)	442, 448, 1552
VneI	GTGCAC	1 cut(s)	707
VpaK11BI	GGWCC	2 cut(s)	143, 1431
VspI	ATTAAT	1 cut(s)	768
XceI	RCATGY	2 cut(s)	16, 1603
XmiI	GTMKAC	2 cut(s)	1195, 1523
XmnI	GAANNNNTTC	1 cut(s)	1536
XspI	CTAG	4 cut(s)	311, 591, 824, 1541
Zsp2I	ATGCAT	2 cut(s)	14, 1284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.