Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0003051

Physical Location & Seq

Genomic Coordinates Forward (+)

5831286 .. 5833664

Gene Structure 2379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g07680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGCCGGCGCTGGGATCCACCCGTACCACCAGCAATGGCAGCCCGCAGCCGCCGCTCCTCCGCCTCCCCCTACGGCTGTCGGCTCTATAGCTCCTCCTCCTCCTCACCACCTCGTCGACAACCCGAACCGACCTCTTACCGATGAGGTTCGCACCATATTCATCACTGGTCTTCCTGAGGATGTGAAGGAGAGAGAGATACAGAACCTCCTGAGATGGTTGCCAGGATACGAGGCCTCGCAGGTCAACAACAAAGGCGAGAAGCCTATGAGTTTCGCGCTCTTTTCCACTGCTCATCAAGCCATTGCTGCCAAAGACGCCCTTCAGGGTATGATTTTCGATTCGGAGTCGAAGGCTGTGCTGCACACGGAGATGGCAAAGAAGAATCTTTTTGTTAAACGAGGTGAGGATGGTGATCAATTTAACACTAAAGATAACCCACCGTGCAATACCTTATTTATTGGAAATCTGGGAGAGACAATTAATGAGGAAGAACTGAGGGGCCTTTTCAGCTCACAACCTGGATTTAAGCAAATGAAGATCTTAAGACAAGAAAGGCATACTGTTTGTTTCATTGAGTTTGAAGATGTGAACAGTGCCACCAATGTGCACCACGCTTTGCAGGGTGCTGTTATCCCCAGTTCTGGTTCTGTAGGCATGAGAATACAATATCCTTTTGGAATTTTCTTATGGTCAAAATTCGTGCTCTCATGTACCTGGTTGCTGGATTGTTTTACATGTATGACCGTGATTAGTTTCTACTTTCTCAAGTCACCTGTAACATTCATGTTTCCAAAACTCTGTTTTCTAGGATGGATTTTTGTTTTGTGGGTTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009790 GO:0009887 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0030510 GO:0030514 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035239 GO:0035295 GO:0042127 GO:0042802 GO:0042803 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0046983 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048660 GO:0048661 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051147 GO:0051148 GO:0051150 GO:0051151 GO:0051171 GO:0051252 GO:0055123 GO:0060255 GO:0065007 GO:0080090 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

280

Amino Acids

31.26

Weight (kDa)

6.3

Isoelectric Point (pI)

50.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	53 - 115	7.2e-06	RNA recognition motif
RRM_1	PF00076	152 - 213	3e-10	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21215 AT3G21215 AT3G21215 AT3G21215
fragaria_vesca	FvH4_3g14953 FvH4_3g16432 FvH4_4g15800 FvH4_4g32761 FvH4_5g34521 FvH4_6g16241 FvH4_6g37450 FvH4_6g45392 FvH4_7g15921 FvH4_7g31684
malus_domestica	MD09G1158000.v1.1 MD17G1144000.v1.1
prunus_persica	Prupe.3G168000_v2.0.a1
pyrus_communis	pycom09g07680 pycom17g13730
rosa_chinensis	RchiOBHm_Chr2g0150271 RchiOBHm_Chr2g0150291
rosa_laevigata	RLG00000020483
rosa_multiflora	Rmu_sc0001169.1_g000003 Rmu_sc0020705.1_g000001 Rmu_sc0024000.1_g000001 Rmu_sc0038093.1_g000001 Rmu_sc0040821.1_g000001 Rmu_ssc0000020.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097320 Rroxscaffold_2G00097330
rosa_rugosa	Rorug02G0420200 Rorug02G0420300
rosa_samantha	Rh2AG479200 Rh2BG491500 Rh2CG465400 Rh2DG500300
rosa_wichuraiana	Rw2G038980 Rw2G039110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	232
AccBSI	CCGCTC	1 cut(s)	56
AccI	GTMKAC	1 cut(s)	117
AccII	CGCG	1 cut(s)	278
AciI	CCGC	4 cut(s)	45, 51, 54, 62
AclWI	GGATC	2 cut(s)	10, 23
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	681, 698
AcuI	CTGAAG	1 cut(s)	308
AcyI	GRCGYC	1 cut(s)	318
AfaI	GTAC	2 cut(s)	26, 715
AfiI	CCNNNNNNNGG	2 cut(s)	12, 644
AflII	CTTAAG	1 cut(s)	544
AflIII	ACRYGT	1 cut(s)	737
AgsI	TTSAA	1 cut(s)	584
AjnI	CCWGG	3 cut(s)	223, 520, 716
AleI	CACNNNNGTG	1 cut(s)	605
AluBI	AGCT	2 cut(s)	92, 513
AluI	AGCT	2 cut(s)	92, 513
Alw21I	GWGCWC	2 cut(s)	612, 708
Alw26I	GTCTC	1 cut(s)	470
Alw44I	GTGCAC	1 cut(s)	608
AlwI	GGATC	2 cut(s)	10, 23
AoxI	GGCC	3 cut(s)	3, 234, 502
ApaLI	GTGCAC	1 cut(s)	608
ApeKI	GCWGC	4 cut(s)	40, 47, 308, 361
ApoI	RAATTY	2 cut(s)	681, 698
AseI	ATTAAT	1 cut(s)	483
AspLEI	GCGC	2 cut(s)	11, 280
AspS9I	GGNCC	1 cut(s)	502
AsuHPI	GGTGA	4 cut(s)	98, 416, 425, 765
AxyI	CCTNAGG	1 cut(s)	177
BaeGI	GKGCMC	1 cut(s)	612
BamHI	GGATCC	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	164
Bbv12I	GWGCWC	2 cut(s)	612, 708
BbvI	GCAGC	4 cut(s)	52, 59, 295, 348
BccI	CCATC	4 cut(s)	210, 367, 404, 807
BceAI	ACGGC	1 cut(s)	90
BcgI	CGANNNNNNTGC	2 cut(s)	340, 374
BciT130I	CCWGG	3 cut(s)	225, 522, 718
BciVI	GTATCC	1 cut(s)	221
BclI	TGATCA	1 cut(s)	415
BcoDI	GTCTC	1 cut(s)	470
BfaI	CTAG	1 cut(s)	809
BfmI	CTRYAG	2 cut(s)	87, 651
BfoI	RGCGCY	1 cut(s)	12
BfrI	CTTAAG	1 cut(s)	544
BfuAI	ACCTGC	1 cut(s)	232
BfuI	GTATCC	1 cut(s)	221
BglII	AGATCT	1 cut(s)	540
BisI	GCNGC	6 cut(s)	41, 48, 51, 54, 309, 362
BlsI	GCNGC	6 cut(s)	42, 49, 52, 55, 310, 363
Bme1390I	CCNGG	3 cut(s)	225, 522, 718
BmgT120I	GGNCC	1 cut(s)	502
BmiI	GGNNCC	2 cut(s)	17, 503
BmrFI	CCNGG	3 cut(s)	225, 522, 718
BmrI	ACTGGG	1 cut(s)	633
BmuI	ACTGGG	1 cut(s)	633
BpiI	GAAGAC	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	752
BsaBI	GATNNNNATC	1 cut(s)	414
BsaHI	GRCGYC	1 cut(s)	318
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 644
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	2 cut(s)	172, 639
Bse21I	CCTNAGG	1 cut(s)	177
Bse3DI	GCAATG	2 cut(s)	41, 303
Bse8I	GATNNNNATC	1 cut(s)	414
BseBI	CCWGG	3 cut(s)	225, 522, 718
BseGI	GGATG	3 cut(s)	187, 415, 818
BseJI	GATNNNNATC	1 cut(s)	414
BseLI	CCNNNNNNNGG	2 cut(s)	12, 644
BseMI	GCAATG	2 cut(s)	41, 303
BseMII	CTCAG	3 cut(s)	168, 203, 488
BseNI	ACTGG	2 cut(s)	172, 639
BseRI	GAGGAG	5 cut(s)	48, 84, 87, 90, 93
BseSI	GKGCMC	1 cut(s)	612
BseXI	GCAGC	4 cut(s)	52, 59, 295, 348
BseYI	CCCAGC	1 cut(s)	11
BsgI	GTGCAG	1 cut(s)	347
Bsh1236I	CGCG	1 cut(s)	278
BshFI	GGCC	3 cut(s)	5, 236, 504
BsiHKAI	GWGCWC	2 cut(s)	612, 708
BsiSI	CCGG	1 cut(s)	6
BslI	CCNNNNNNNGG	2 cut(s)	12, 644
BsmAI	GTCTC	1 cut(s)	470
BsnI	GGCC	3 cut(s)	5, 236, 504
Bsp1286I	GDGCHC	2 cut(s)	612, 708
Bsp143I	GATC	3 cut(s)	15, 415, 540
BspACI	CCGC	4 cut(s)	45, 51, 54, 62
BspANI	GGCC	3 cut(s)	5, 236, 504
BspCNI	CTCAG	3 cut(s)	169, 204, 489
BspFNI	CGCG	1 cut(s)	278
BspLI	GGNNCC	2 cut(s)	17, 503
BspMI	ACCTGC	1 cut(s)	232
BspPI	GGATC	2 cut(s)	10, 23
BspTI	CTTAAG	1 cut(s)	544
BsrBI	CCGCTC	1 cut(s)	56
BsrDI	GCAATG	2 cut(s)	41, 303
BsrFI	RCCGGY	1 cut(s)	5
BsrI	ACTGG	2 cut(s)	172, 639
BssAI	RCCGGY	1 cut(s)	5
BssMI	GATC	3 cut(s)	15, 415, 540
BssNI	GRCGYC	1 cut(s)	318
Bst2UI	CCWGG	3 cut(s)	225, 522, 718
Bst4CI	ACNGT	4 cut(s)	444, 565, 596, 748
BstACI	GRCGYC	1 cut(s)	318
BstAFI	CTTAAG	1 cut(s)	544
BstC8I	GCNNGC	2 cut(s)	7, 45
BstDEI	CTNAG	3 cut(s)	177, 212, 497
BstF5I	GGATG	3 cut(s)	187, 415, 818
BstFNI	CGCG	1 cut(s)	278
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	2 cut(s)	11, 280
BstKTI	GATC	3 cut(s)	18, 418, 543
BstMAI	GTCTC	1 cut(s)	470
BstMBI	GATC	3 cut(s)	15, 415, 540
BstMWI	GCNNNNNNNGC	6 cut(s)	40, 53, 299, 308, 317, 510
BstNI	CCWGG	3 cut(s)	225, 522, 718
BstNSI	RCATGY	1 cut(s)	741
BstSCI	CCNGG	3 cut(s)	223, 520, 716
BstSFI	CTRYAG	2 cut(s)	87, 651
BstSLI	GKGCMC	1 cut(s)	612
BstUI	CGCG	1 cut(s)	278
BstV1I	GCAGC	4 cut(s)	52, 59, 295, 348
BstV2I	GAAGAC	1 cut(s)	164
BstX2I	RGATCY	2 cut(s)	15, 540
BstYI	RGATCY	2 cut(s)	15, 540
Bsu36I	CCTNAGG	1 cut(s)	177
BsuI	GTATCC	1 cut(s)	221
BsuRI	GGCC	3 cut(s)	5, 236, 504
BtsCI	GGATG	3 cut(s)	187, 415, 818
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	3 cut(s)	165, 288, 601
BveI	ACCTGC	1 cut(s)	232
Cac8I	GCNNGC	2 cut(s)	7, 45
CfoI	GCGC	2 cut(s)	11, 280
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	1 cut(s)	502
CseI	GACGC	1 cut(s)	326
CsiI	ACCWGGT	1 cut(s)	716
Csp6I	GTAC	2 cut(s)	25, 714
CviAII	CATG	4 cut(s)	658, 711, 738, 787
CviQI	GTAC	2 cut(s)	25, 714
DdeI	CTNAG	3 cut(s)	177, 212, 497
DpnI	GATC	3 cut(s)	17, 417, 542
DpnII	GATC	3 cut(s)	15, 415, 540
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	51
Eco147I	AGGCCT	1 cut(s)	236
Eco57I	CTGAAG	1 cut(s)	308
Eco81I	CCTNAGG	1 cut(s)	177
EcoO109I	RGGNCCY	1 cut(s)	502
EcoRII	CCWGG	3 cut(s)	223, 520, 716
FaeI	CATG	4 cut(s)	661, 714, 741, 790
FalI	AAGNNNNNCTT	2 cut(s)	306, 338
FatI	CATG	4 cut(s)	657, 710, 737, 786
FauI	CCCGC	1 cut(s)	52
FbaI	TGATCA	1 cut(s)	415
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	6 cut(s)	41, 48, 51, 54, 309, 362
FokI	GGATG	3 cut(s)	194, 422, 825
Fsp4HI	GCNGC	6 cut(s)	41, 48, 51, 54, 309, 362
FspBI	CTAG	1 cut(s)	809
GlaI	GCGC	2 cut(s)	10, 279
GluI	GCNGC	6 cut(s)	41, 48, 51, 54, 309, 362
GsaI	CCCAGC	1 cut(s)	15
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	3 cut(s)	5, 236, 504
HapII	CCGG	1 cut(s)	6
HgaI	GACGC	1 cut(s)	326
HhaI	GCGC	2 cut(s)	11, 280
Hin1I	GRCGYC	1 cut(s)	318
Hin1II	CATG	4 cut(s)	661, 714, 741, 790
Hin6I	GCGC	2 cut(s)	9, 278
HinP1I	GCGC	2 cut(s)	9, 278
HincII	GTYRAC	2 cut(s)	118, 247
HindII	GTYRAC	2 cut(s)	118, 247
HinfI	GANTC	3 cut(s)	341, 347, 385
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	4 cut(s)	98, 416, 425, 765
Hpy166II	GTNNAC	4 cut(s)	118, 247, 592, 610
Hpy188I	TCNGA	1 cut(s)	346
Hpy188III	TCNNGA	2 cut(s)	176, 211
Hpy8I	GTNNAC	4 cut(s)	118, 247, 592, 610
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	3 cut(s)	181, 332, 346
HpyCH4III	ACNGT	4 cut(s)	444, 565, 596, 748
HpyCH4V	TGCA	4 cut(s)	364, 447, 610, 622
HpyF10VI	GCNNNNNNNGC	6 cut(s)	40, 53, 299, 308, 317, 510
HpyF3I	CTNAG	3 cut(s)	177, 212, 497
Hsp92I	GRCGYC	1 cut(s)	318
Hsp92II	CATG	4 cut(s)	661, 714, 741, 790
HspAI	GCGC	2 cut(s)	9, 278
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	3 cut(s)	15, 415, 540
LmnI	GCTCC	2 cut(s)	61, 97
Lsp1109I	GCAGC	4 cut(s)	52, 59, 295, 348
MabI	ACCWGGT	1 cut(s)	716
MaeI	CTAG	1 cut(s)	809
MaeIII	GTNAC	2 cut(s)	771, 778
MalI	GATC	3 cut(s)	17, 417, 542
MbiI	CCGCTC	1 cut(s)	56
MboI	GATC	3 cut(s)	15, 415, 540
MboII	GAAGA	5 cut(s)	164, 394, 503, 550, 596
MflI	RGATCY	2 cut(s)	15, 540
MhlI	GDGCHC	2 cut(s)	612, 708
MluCI	AATT	4 cut(s)	419, 480, 681, 698
MlyI	GAGTC	1 cut(s)	356
MroNI	GCCGGC	1 cut(s)	5
MseI	TTAA	5 cut(s)	396, 423, 483, 528, 545
MslI	CAYNNNNRTG	2 cut(s)	371, 605
MspCI	CTTAAG	1 cut(s)	544
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	3 cut(s)	225, 522, 718
MvaI	CCWGG	3 cut(s)	225, 522, 718
MvnI	CGCG	1 cut(s)	278
MwoI	GCNNNNNNNGC	6 cut(s)	40, 53, 299, 308, 317, 510
NaeI	GCCGGC	1 cut(s)	7
NdeII	GATC	3 cut(s)	15, 415, 540
NgoMIV	GCCGGC	1 cut(s)	5
NlaIII	CATG	4 cut(s)	661, 714, 741, 790
NlaIV	GGNNCC	2 cut(s)	17, 503
NmuCI	GTSAC	1 cut(s)	771
NspI	RCATGY	1 cut(s)	741
OliI	CACNNNNGTG	1 cut(s)	605
PceI	AGGCCT	1 cut(s)	236
PciI	ACATGT	1 cut(s)	737
PdiI	GCCGGC	1 cut(s)	7
PfeI	GAWTC	2 cut(s)	341, 385
PkrI	GCNGC	6 cut(s)	42, 49, 52, 55, 310, 363
PleI	GAGTC	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	355
PscI	ACATGT	1 cut(s)	737
PshBI	ATTAAT	1 cut(s)	483
Psp6I	CCWGG	3 cut(s)	223, 520, 716
PspFI	CCCAGC	1 cut(s)	11
PspGI	CCWGG	3 cut(s)	223, 520, 716
PspN4I	GGNNCC	2 cut(s)	17, 503
PspPI	GGNCC	1 cut(s)	502
PsuI	RGATCY	2 cut(s)	15, 540
RsaI	GTAC	2 cut(s)	26, 715
RsaNI	GTAC	2 cut(s)	25, 714
RseI	CAYNNNNRTG	2 cut(s)	371, 605
SalI	GTCGAC	1 cut(s)	116
SaqAI	TTAA	5 cut(s)	396, 423, 483, 528, 545
SatI	GCNGC	6 cut(s)	41, 48, 51, 54, 309, 362
Sau3AI	GATC	3 cut(s)	15, 415, 540
Sau96I	GGNCC	1 cut(s)	502
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	3 cut(s)	225, 522, 718
SduI	GDGCHC	2 cut(s)	612, 708
SexAI	ACCWGGT	1 cut(s)	716
SfcI	CTRYAG	2 cut(s)	87, 651
SmiMI	CAYNNNNRTG	2 cut(s)	371, 605
SmlI	CTYRAG	2 cut(s)	544, 767
SmoI	CTYRAG	2 cut(s)	544, 767
Sse9I	AATT	4 cut(s)	419, 480, 681, 698
SseBI	AGGCCT	1 cut(s)	236
SsiI	CCGC	4 cut(s)	45, 51, 54, 62
SspMI	CTAG	1 cut(s)	809
StuI	AGGCCT	1 cut(s)	236
StyD4I	CCNGG	3 cut(s)	223, 520, 716
TaaI	ACNGT	4 cut(s)	444, 565, 596, 748
TaqI	TCGA	3 cut(s)	117, 339, 350
TasI	AATT	4 cut(s)	419, 480, 681, 698
TauI	GCSGC	2 cut(s)	53, 56
TfiI	GAWTC	2 cut(s)	341, 385
Tru1I	TTAA	5 cut(s)	396, 423, 483, 528, 545
Tru9I	TTAA	5 cut(s)	396, 423, 483, 528, 545
TscAI	CASTG	3 cut(s)	172, 295, 601
TseFI	GTSAC	1 cut(s)	771
TseI	GCWGC	4 cut(s)	40, 47, 308, 361
Tsp45I	GTSAC	1 cut(s)	771
TspDTI	ATGAA	4 cut(s)	151, 551, 562, 775
TspGWI	ACGGA	1 cut(s)	383
TspRI	CASTG	3 cut(s)	172, 295, 601
Vha464I	CTTAAG	1 cut(s)	544
VneI	GTGCAC	1 cut(s)	608
VspI	ATTAAT	1 cut(s)	483
XapI	RAATTY	2 cut(s)	681, 698
XceI	RCATGY	1 cut(s)	741
XmiI	GTMKAC	1 cut(s)	117
XspI	CTAG	1 cut(s)	809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.