Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0003051

Physical Location & Seq

Genomic Coordinates Forward (+)

12642355 .. 12644451

Gene Structure 2097 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1158000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCCGGCACTGGGATCCACCCGTACCACCAGCAATGGCAGCCCGCAGCCGCCGCTCCTCCGCCTCCCCCTCCGGCTGTTGGCTCTATAGCTCCTCCTCCTCCTCACCACCTCGTCGACAACCCCAACCGACCCCTTACCGATGAGGTTCGCACCATATTCATCACTGGTCTTCCTGAGGATGTGAAGGAGAGAGAGATACAGAACCTCCTGAGATGGTTGCCAGGATACGAGGCCTCGCAGGTCAACAACAAGGGCGAGAAGCCTATGAGTTTCGCGCTCTTTTCCACTGCTCATCAAGCCATTGCTGCCAAAGACGCCCTTCAGGGTATGATTTTCGATTCGGAGTCGAAGGCTGTGCTGCACACGGAGATGGCAAAGAAGAATCTTTTTGTTAAAAGAGGAATTGTAGGCGATACAAGCCCTTACGATCAGAGTAAACGTTTGCGAACTGGTGGTGACTACTCACAGGCTGGCTATAGCAGTCCATCTCCTTTTCATCCTCCTCCTCCACCTGTTTGGGGGCCACACGGGTATATGGCTCCACCACCTCCTACGTATGATCCATATGGTGGTTATCCTGTTCCTCCAGTACAAATGCATCCTCCTCCTCCTGTACCAGCACCGAGTAGTTATGTACCTGTTCTGAACACTAAAGATAACCCACCGTGCAATACCTTATTTATTGGAAATCTGGGAGAGACAATTAATGAGGAAGAACTGAGGGGCCTTTTCAGCTCACAACCTGGATTTAAGCAAATGAAGATCTTAAGACAAGAAAGGCATACTGTTTGTTTCATTGAGTTTGAAGTAAGTAATATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009790 GO:0009887 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0030510 GO:0030514 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035239 GO:0035295 GO:0042127 GO:0042802 GO:0042803 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0046983 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048660 GO:0048661 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051147 GO:0051148 GO:0051150 GO:0051151 GO:0051171 GO:0051252 GO:0055123 GO:0060255 GO:0065007 GO:0080090 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

275

Amino Acids

30.09

Weight (kDa)

6.36

Isoelectric Point (pI)

74.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	53 - 115	7e-06	RNA recognition motif
RRM_1	PF00076	227 - 270	1e-06	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21215 AT3G21215 AT3G21215 AT3G21215
fragaria_vesca	FvH4_3g14953 FvH4_3g16432 FvH4_4g15800 FvH4_4g32761 FvH4_5g34521 FvH4_6g16241 FvH4_6g37450 FvH4_6g45392 FvH4_7g15921 FvH4_7g31684
malus_domestica	MD09G1158000.v1.1 MD17G1144000.v1.1
prunus_persica	Prupe.3G168000_v2.0.a1
pyrus_communis	pycom09g07680 pycom17g13730
rosa_chinensis	RchiOBHm_Chr2g0150271 RchiOBHm_Chr2g0150291
rosa_laevigata	RLG00000020483
rosa_multiflora	Rmu_sc0001169.1_g000003 Rmu_sc0020705.1_g000001 Rmu_sc0024000.1_g000001 Rmu_sc0038093.1_g000001 Rmu_sc0040821.1_g000001 Rmu_ssc0000020.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097320 Rroxscaffold_2G00097330
rosa_rugosa	Rorug02G0420200 Rorug02G0420300
rosa_samantha	Rh2AG479200 Rh2BG491500 Rh2CG465400 Rh2DG500300
rosa_wichuraiana	Rw2G038980 Rw2G039110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	232
AccB7I	CCANNNNNTGG	1 cut(s)	572
AccBSI	CCGCTC	1 cut(s)	56
AccI	GTMKAC	1 cut(s)	117
AccII	CGCG	1 cut(s)	278
AciI	CCGC	4 cut(s)	45, 51, 54, 62
AclI	AACGTT	1 cut(s)	442
AclWI	GGATC	3 cut(s)	10, 23, 557
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	308
AcyI	GRCGYC	1 cut(s)	318
AfaI	GTAC	4 cut(s)	26, 594, 618, 639
AfiI	CCNNNNNNNGG	4 cut(s)	12, 80, 521, 572
AflII	CTTAAG	1 cut(s)	769
AgsI	TTSAA	1 cut(s)	809
AjnI	CCWGG	2 cut(s)	223, 745
AluBI	AGCT	2 cut(s)	92, 738
AluI	AGCT	2 cut(s)	92, 738
Alw26I	GTCTC	1 cut(s)	695
AlwI	GGATC	3 cut(s)	10, 23, 557
AoxI	GGCC	4 cut(s)	3, 234, 524, 727
ApeKI	GCWGC	4 cut(s)	40, 47, 308, 361
AseI	ATTAAT	1 cut(s)	708
AspLEI	GCGC	1 cut(s)	280
AspS9I	GGNCC	2 cut(s)	524, 727
AsuHPI	GGTGA	2 cut(s)	98, 470
AxyI	CCTNAGG	1 cut(s)	177
BamHI	GGATCC	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	164
BbvI	GCAGC	4 cut(s)	52, 59, 295, 348
BccI	CCATC	3 cut(s)	210, 367, 496
BcgI	CGANNNNNNTGC	2 cut(s)	340, 374
BciT130I	CCWGG	2 cut(s)	225, 747
BciVI	GTATCC	1 cut(s)	221
BcoDI	GTCTC	1 cut(s)	695
BfmI	CTRYAG	2 cut(s)	87, 478
BfrI	CTTAAG	1 cut(s)	769
BfuAI	ACCTGC	1 cut(s)	232
BfuI	GTATCC	1 cut(s)	221
BglII	AGATCT	1 cut(s)	765
BisI	GCNGC	6 cut(s)	41, 48, 51, 54, 309, 362
BlsI	GCNGC	6 cut(s)	42, 49, 52, 55, 310, 363
Bme1390I	CCNGG	2 cut(s)	225, 747
BmgT120I	GGNCC	2 cut(s)	524, 727
BmiI	GGNNCC	4 cut(s)	17, 525, 543, 728
BmrFI	CCNGG	2 cut(s)	225, 747
BmrI	ACTGGG	1 cut(s)	21
BmsI	GCATC	1 cut(s)	610
BmuI	ACTGGG	1 cut(s)	21
BpiI	GAAGAC	1 cut(s)	164
BpmI	CTGGAG	1 cut(s)	573
BsaAI	YACGTR	1 cut(s)	558
BsaHI	GRCGYC	1 cut(s)	318
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
Bsc4I	CCNNNNNNNGG	4 cut(s)	12, 80, 521, 572
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	4 cut(s)	16, 172, 457, 590
Bse21I	CCTNAGG	1 cut(s)	177
Bse3DI	GCAATG	2 cut(s)	41, 303
BseBI	CCWGG	2 cut(s)	225, 747
BseGI	GGATG	3 cut(s)	187, 499, 601
BseLI	CCNNNNNNNGG	4 cut(s)	12, 80, 521, 572
BseMI	GCAATG	2 cut(s)	41, 303
BseMII	CTCAG	3 cut(s)	168, 203, 713
BseNI	ACTGG	4 cut(s)	16, 172, 457, 590
BseRI	GAGGAG	9 cut(s)	48, 84, 87, 90, 93, 495, 498, 597, 600
BseXI	GCAGC	4 cut(s)	52, 59, 295, 348
BsgI	GTGCAG	1 cut(s)	347
Bsh1236I	CGCG	1 cut(s)	278
BshFI	GGCC	4 cut(s)	5, 236, 526, 729
BsiSI	CCGG	2 cut(s)	6, 74
BslI	CCNNNNNNNGG	4 cut(s)	12, 80, 521, 572
BsmAI	GTCTC	1 cut(s)	695
BsnI	GGCC	4 cut(s)	5, 236, 526, 729
Bsp143I	GATC	4 cut(s)	15, 430, 562, 765
BspACI	CCGC	4 cut(s)	45, 51, 54, 62
BspANI	GGCC	4 cut(s)	5, 236, 526, 729
BspCNI	CTCAG	3 cut(s)	169, 204, 714
BspFNI	CGCG	1 cut(s)	278
BspLI	GGNNCC	4 cut(s)	17, 525, 543, 728
BspMI	ACCTGC	1 cut(s)	232
BspPI	GGATC	3 cut(s)	10, 23, 557
BspTI	CTTAAG	1 cut(s)	769
BsrBI	CCGCTC	1 cut(s)	56
BsrDI	GCAATG	2 cut(s)	41, 303
BsrFI	RCCGGY	1 cut(s)	5
BsrI	ACTGG	4 cut(s)	16, 172, 457, 590
BssAI	RCCGGY	1 cut(s)	5
BssMI	GATC	4 cut(s)	15, 430, 562, 765
BssNI	GRCGYC	1 cut(s)	318
Bst2UI	CCWGG	2 cut(s)	225, 747
Bst4CI	ACNGT	2 cut(s)	669, 790
BstACI	GRCGYC	1 cut(s)	318
BstAFI	CTTAAG	1 cut(s)	769
BstBAI	YACGTR	1 cut(s)	558
BstC8I	GCNNGC	3 cut(s)	7, 45, 475
BstDEI	CTNAG	3 cut(s)	177, 212, 722
BstF5I	GGATG	3 cut(s)	187, 499, 601
BstFNI	CGCG	1 cut(s)	278
BstHHI	GCGC	1 cut(s)	280
BstKTI	GATC	4 cut(s)	18, 433, 565, 768
BstMAI	GTCTC	1 cut(s)	695
BstMBI	GATC	4 cut(s)	15, 430, 562, 765
BstMWI	GCNNNNNNNGC	7 cut(s)	40, 53, 299, 308, 317, 420, 735
BstNI	CCWGG	2 cut(s)	225, 747
BstSCI	CCNGG	2 cut(s)	223, 745
BstSFI	CTRYAG	2 cut(s)	87, 478
BstSNI	TACGTA	1 cut(s)	558
BstUI	CGCG	1 cut(s)	278
BstV1I	GCAGC	4 cut(s)	52, 59, 295, 348
BstV2I	GAAGAC	1 cut(s)	164
BstX2I	RGATCY	2 cut(s)	15, 765
BstXI	CCANNNNNNTGG	1 cut(s)	519
BstYI	RGATCY	2 cut(s)	15, 765
Bsu36I	CCTNAGG	1 cut(s)	177
BsuI	GTATCC	1 cut(s)	221
BsuRI	GGCC	4 cut(s)	5, 236, 526, 729
BtsCI	GGATG	3 cut(s)	187, 499, 601
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	3 cut(s)	9, 165, 288
BveI	ACCTGC	1 cut(s)	232
Cac8I	GCNNGC	3 cut(s)	7, 45, 475
CfoI	GCGC	1 cut(s)	280
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	2 cut(s)	524, 727
CseI	GACGC	1 cut(s)	326
Csp6I	GTAC	4 cut(s)	25, 593, 617, 638
CviQI	GTAC	4 cut(s)	25, 593, 617, 638
DdeI	CTNAG	3 cut(s)	177, 212, 722
DpnI	GATC	4 cut(s)	17, 432, 564, 767
DpnII	GATC	4 cut(s)	15, 430, 562, 765
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	51
Eco105I	TACGTA	1 cut(s)	558
Eco147I	AGGCCT	1 cut(s)	236
Eco57I	CTGAAG	1 cut(s)	308
Eco81I	CCTNAGG	1 cut(s)	177
EcoO109I	RGGNCCY	1 cut(s)	727
EcoRII	CCWGG	2 cut(s)	223, 745
EcoT22I	ATGCAT	1 cut(s)	603
FalI	AAGNNNNNCTT	2 cut(s)	306, 338
FauI	CCCGC	1 cut(s)	52
FauNDI	CATATG	1 cut(s)	568
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	6 cut(s)	41, 48, 51, 54, 309, 362
FokI	GGATG	3 cut(s)	194, 486, 588
Fsp4HI	GCNGC	6 cut(s)	41, 48, 51, 54, 309, 362
GlaI	GCGC	1 cut(s)	279
GluI	GCNGC	6 cut(s)	41, 48, 51, 54, 309, 362
GsuI	CTGGAG	1 cut(s)	573
HaeIII	GGCC	4 cut(s)	5, 236, 526, 729
HapII	CCGG	2 cut(s)	6, 74
HgaI	GACGC	1 cut(s)	326
HhaI	GCGC	1 cut(s)	280
Hin1I	GRCGYC	1 cut(s)	318
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HincII	GTYRAC	2 cut(s)	118, 247
HindII	GTYRAC	2 cut(s)	118, 247
HinfI	GANTC	3 cut(s)	341, 347, 385
HpaII	CCGG	2 cut(s)	6, 74
HphI	GGTGA	2 cut(s)	98, 470
Hpy166II	GTNNAC	3 cut(s)	118, 247, 440
Hpy188I	TCNGA	3 cut(s)	346, 435, 648
Hpy188III	TCNNGA	2 cut(s)	176, 211
Hpy8I	GTNNAC	3 cut(s)	118, 247, 440
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	3 cut(s)	181, 332, 346
HpyCH4III	ACNGT	2 cut(s)	669, 790
HpyCH4IV	ACGT	2 cut(s)	442, 557
HpyCH4V	TGCA	3 cut(s)	364, 601, 672
HpyF10VI	GCNNNNNNNGC	7 cut(s)	40, 53, 299, 308, 317, 420, 735
HpyF3I	CTNAG	3 cut(s)	177, 212, 722
HpySE526I	ACGT	2 cut(s)	442, 557
Hsp92I	GRCGYC	1 cut(s)	318
HspAI	GCGC	1 cut(s)	278
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
Kzo9I	GATC	4 cut(s)	15, 430, 562, 765
LmnI	GCTCC	3 cut(s)	61, 97, 547
Lsp1109I	GCAGC	4 cut(s)	52, 59, 295, 348
LweI	GCATC	1 cut(s)	610
MaeII	ACGT	2 cut(s)	442, 557
MaeIII	GTNAC	1 cut(s)	458
MalI	GATC	4 cut(s)	17, 432, 564, 767
MbiI	CCGCTC	1 cut(s)	56
MboI	GATC	4 cut(s)	15, 430, 562, 765
MboII	GAAGA	4 cut(s)	164, 394, 728, 775
MflI	RGATCY	2 cut(s)	15, 765
MluCI	AATT	2 cut(s)	405, 705
MlyI	GAGTC	1 cut(s)	356
Mph1103I	ATGCAT	1 cut(s)	603
MroNI	GCCGGC	1 cut(s)	5
MseI	TTAA	4 cut(s)	396, 708, 753, 770
MslI	CAYNNNNRTG	1 cut(s)	371
MspCI	CTTAAG	1 cut(s)	769
MspI	CCGG	2 cut(s)	6, 74
MspR9I	CCNGG	2 cut(s)	225, 747
MvaI	CCWGG	2 cut(s)	225, 747
MvnI	CGCG	1 cut(s)	278
MwoI	GCNNNNNNNGC	7 cut(s)	40, 53, 299, 308, 317, 420, 735
NaeI	GCCGGC	1 cut(s)	7
NdeI	CATATG	1 cut(s)	568
NdeII	GATC	4 cut(s)	15, 430, 562, 765
NgoMIV	GCCGGC	1 cut(s)	5
NlaIV	GGNNCC	4 cut(s)	17, 525, 543, 728
NmuCI	GTSAC	1 cut(s)	458
NsiI	ATGCAT	1 cut(s)	603
PceI	AGGCCT	1 cut(s)	236
PdiI	GCCGGC	1 cut(s)	7
PfeI	GAWTC	2 cut(s)	341, 385
PflMI	CCANNNNNTGG	1 cut(s)	572
PkrI	GCNGC	6 cut(s)	42, 49, 52, 55, 310, 363
PleI	GAGTC	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	355
Ppu21I	YACGTR	1 cut(s)	558
PshBI	ATTAAT	1 cut(s)	708
Psp1406I	AACGTT	1 cut(s)	442
Psp6I	CCWGG	2 cut(s)	223, 745
PspGI	CCWGG	2 cut(s)	223, 745
PspN4I	GGNNCC	4 cut(s)	17, 525, 543, 728
PspPI	GGNCC	2 cut(s)	524, 727
PsuI	RGATCY	2 cut(s)	15, 765
RsaI	GTAC	4 cut(s)	26, 594, 618, 639
RsaNI	GTAC	4 cut(s)	25, 593, 617, 638
RseI	CAYNNNNRTG	1 cut(s)	371
SalI	GTCGAC	1 cut(s)	116
SaqAI	TTAA	4 cut(s)	396, 708, 753, 770
SatI	GCNGC	6 cut(s)	41, 48, 51, 54, 309, 362
Sau3AI	GATC	4 cut(s)	15, 430, 562, 765
Sau96I	GGNCC	2 cut(s)	524, 727
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	2 cut(s)	225, 747
SfaNI	GCATC	1 cut(s)	610
SfcI	CTRYAG	2 cut(s)	87, 478
SmiMI	CAYNNNNRTG	1 cut(s)	371
SmlI	CTYRAG	1 cut(s)	769
SmoI	CTYRAG	1 cut(s)	769
SnaBI	TACGTA	1 cut(s)	558
Sse9I	AATT	2 cut(s)	405, 705
SseBI	AGGCCT	1 cut(s)	236
SsiI	CCGC	4 cut(s)	45, 51, 54, 62
SspI	AATATT	1 cut(s)	820
StuI	AGGCCT	1 cut(s)	236
StyD4I	CCNGG	2 cut(s)	223, 745
TaaI	ACNGT	2 cut(s)	669, 790
TaiI	ACGT	2 cut(s)	445, 560
TaqI	TCGA	3 cut(s)	117, 339, 350
TasI	AATT	2 cut(s)	405, 705
TatI	WGTACW	1 cut(s)	592
TauI	GCSGC	2 cut(s)	53, 56
TfiI	GAWTC	2 cut(s)	341, 385
Tru1I	TTAA	4 cut(s)	396, 708, 753, 770
Tru9I	TTAA	4 cut(s)	396, 708, 753, 770
TscAI	CASTG	3 cut(s)	16, 172, 295
TseFI	GTSAC	1 cut(s)	458
TseI	GCWGC	4 cut(s)	40, 47, 308, 361
Tsp45I	GTSAC	1 cut(s)	458
TspDTI	ATGAA	4 cut(s)	151, 488, 776, 787
TspGWI	ACGGA	1 cut(s)	383
TspRI	CASTG	3 cut(s)	16, 172, 295
Van91I	CCANNNNNTGG	1 cut(s)	572
Vha464I	CTTAAG	1 cut(s)	769
VspI	ATTAAT	1 cut(s)	708
XmiI	GTMKAC	1 cut(s)	117
Zsp2I	ATGCAT	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.