Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020705.1

Orthogroup ID

OG0003051

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1196

Gene Structure 1196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020705.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 280 bp

atgtgtgatggagcctctaatttgttctttaatgtgatgttcccttgtttcccgcagaacacaaaagataatccaccatgcaataccttatttattggcaatctaggagagagcattaacgaggaagaactgaggggcctattcagctcacaacctggatttaagcaaatgaagatcttgcgacaggaaaggcatactgtttgcttcattgagtttgaagatgtaaacagtgccactgctgtacaccacaattttcaaggtgctgttatccccagttctg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009790 GO:0009887 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0030510 GO:0030514 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035239 GO:0035295 GO:0042127 GO:0042802 GO:0042803 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0046983 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048660 GO:0048661 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051147 GO:0051148 GO:0051150 GO:0051151 GO:0051171 GO:0051252 GO:0055123 GO:0060255 GO:0065007 GO:0080090 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

93

Amino Acids

10.44

Weight (kDa)

5.15

Isoelectric Point (pI)

50.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21215 AT3G21215 AT3G21215 AT3G21215
fragaria_vesca	FvH4_3g14953 FvH4_3g16432 FvH4_4g15800 FvH4_4g32761 FvH4_5g34521 FvH4_6g16241 FvH4_6g37450 FvH4_6g45392 FvH4_7g15921 FvH4_7g31684
malus_domestica	MD09G1158000.v1.1 MD17G1144000.v1.1
prunus_persica	Prupe.3G168000_v2.0.a1
pyrus_communis	pycom09g07680 pycom17g13730
rosa_chinensis	RchiOBHm_Chr2g0150271 RchiOBHm_Chr2g0150291
rosa_laevigata	RLG00000020483
rosa_multiflora	Rmu_sc0001169.1_g000003 Rmu_sc0020705.1_g000001 Rmu_sc0024000.1_g000001 Rmu_sc0038093.1_g000001 Rmu_sc0040821.1_g000001 Rmu_ssc0000020.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097320 Rroxscaffold_2G00097330
rosa_rugosa	Rorug02G0420200 Rorug02G0420300
rosa_samantha	Rh2AG479200 Rh2BG491500 Rh2CG465400 Rh2DG500300
rosa_wichuraiana	Rw2G038980 Rw2G039110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	53
AfaI	GTAC	1 cut(s)	243
AgsI	TTSAA	2 cut(s)	218, 257
AjnI	CCWGG	1 cut(s)	154
AluBI	AGCT	1 cut(s)	147
AluI	AGCT	1 cut(s)	147
AoxI	GGCC	1 cut(s)	136
AspS9I	GGNCC	1 cut(s)	136
BccI	CCATC	1 cut(s)	2
BciT130I	CCWGG	1 cut(s)	156
BfaI	CTAG	1 cut(s)	104
BglII	AGATCT	1 cut(s)	174
Bme1390I	CCNGG	1 cut(s)	156
BmgT120I	GGNCC	1 cut(s)	136
BmiI	GGNNCC	2 cut(s)	13, 137
BmrFI	CCNGG	1 cut(s)	156
BmrI	ACTGGG	1 cut(s)	267
BmuI	ACTGGG	1 cut(s)	267
Bse1I	ACTGG	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	156
BseMII	CTCAG	1 cut(s)	122
BseNI	ACTGG	1 cut(s)	273
BshFI	GGCC	1 cut(s)	138
BsnI	GGCC	1 cut(s)	138
Bsp1407I	TGTACA	1 cut(s)	241
Bsp143I	GATC	1 cut(s)	174
BspACI	CCGC	1 cut(s)	53
BspANI	GGCC	1 cut(s)	138
BspCNI	CTCAG	1 cut(s)	123
BspLI	GGNNCC	2 cut(s)	13, 137
BsrGI	TGTACA	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	273
BssMI	GATC	1 cut(s)	174
Bst2UI	CCWGG	1 cut(s)	156
Bst4CI	ACNGT	2 cut(s)	199, 230
BstAUI	TGTACA	1 cut(s)	241
BstDEI	CTNAG	1 cut(s)	131
BstKTI	GATC	1 cut(s)	177
BstMBI	GATC	1 cut(s)	174
BstMWI	GCNNNNNNNGC	1 cut(s)	144
BstNI	CCWGG	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	154
BstX2I	RGATCY	1 cut(s)	174
BstYI	RGATCY	1 cut(s)	174
BsuRI	GGCC	1 cut(s)	138
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	2 cut(s)	234, 235
Cfr13I	GGNCC	1 cut(s)	136
Csp6I	GTAC	1 cut(s)	242
CviAII	CATG	1 cut(s)	78
CviJI	RGCY	3 cut(s)	14, 138, 147
CviKI_1	RGCY	3 cut(s)	14, 138, 147
CviQI	GTAC	1 cut(s)	242
DdeI	CTNAG	1 cut(s)	131
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
EcoO109I	RGGNCCY	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	154
FaeI	CATG	1 cut(s)	81
FaiI	YATR	2 cut(s)	79, 195
FatI	CATG	1 cut(s)	77
FauI	CCCGC	1 cut(s)	60
FspBI	CTAG	1 cut(s)	104
HaeIII	GGCC	1 cut(s)	138
Hin1II	CATG	1 cut(s)	81
Hpy166II	GTNNAC	2 cut(s)	226, 244
Hpy8I	GTNNAC	2 cut(s)	226, 244
HpyCH4III	ACNGT	2 cut(s)	199, 230
HpyCH4V	TGCA	1 cut(s)	81
HpyF10VI	GCNNNNNNNGC	1 cut(s)	144
HpyF3I	CTNAG	1 cut(s)	131
Hsp92II	CATG	1 cut(s)	81
Kzo9I	GATC	1 cut(s)	174
LmnI	GCTCC	1 cut(s)	11
LpnPI	CCDG	3 cut(s)	141, 168, 170
MaeI	CTAG	1 cut(s)	104
MalI	GATC	1 cut(s)	176
MboI	GATC	1 cut(s)	174
MboII	GAAGA	3 cut(s)	137, 184, 230
MflI	RGATCY	1 cut(s)	174
MluCI	AATT	2 cut(s)	19, 250
MnlI	CCTC	3 cut(s)	25, 115, 126
MseI	TTAA	3 cut(s)	30, 117, 162
MspR9I	CCNGG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	144
NdeII	GATC	1 cut(s)	174
NlaIII	CATG	1 cut(s)	81
NlaIV	GGNNCC	2 cut(s)	13, 137
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PspN4I	GGNNCC	2 cut(s)	13, 137
PspPI	GGNCC	1 cut(s)	136
PsuI	RGATCY	1 cut(s)	174
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
SaqAI	TTAA	3 cut(s)	30, 117, 162
Sau3AI	GATC	1 cut(s)	174
Sau96I	GGNCC	1 cut(s)	136
ScrFI	CCNGG	1 cut(s)	156
SetI	ASST	4 cut(s)	89, 149, 157, 262
Sse9I	AATT	2 cut(s)	19, 250
SsiI	CCGC	1 cut(s)	53
SspMI	CTAG	1 cut(s)	104
StyD4I	CCNGG	1 cut(s)	154
TaaI	ACNGT	2 cut(s)	199, 230
TasI	AATT	2 cut(s)	19, 250
TatI	WGTACW	1 cut(s)	241
Tru1I	TTAA	3 cut(s)	30, 117, 162
Tru9I	TTAA	3 cut(s)	30, 117, 162
TscAI	CASTG	2 cut(s)	235, 241
TspDTI	ATGAA	2 cut(s)	185, 196
TspRI	CASTG	2 cut(s)	235, 241
XspI	CTAG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.