Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003051

Physical Location & Seq

Genomic Coordinates Forward (+)

18537819 .. 18565014

Gene Structure 27196 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00097330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGTTGCCAGGAGTTTTAACTGATATGAGGTCTGCTTCGGTAAATAATGATTGTTATGCCCGAGCTGGTGTGAAGGCTGAATTGCACAAGCACATTCTCCATGCTTCAAAGAAACTCCACAAGGATATAGTTCACACAGTTGATAACTTTAAGAAGTTACGTACACAATCAACTTTTGGATGGGAATCGAGACTTCGTTCCCCAAGAAGTTTCTCTCTATTTGTACAGGTACTCGGAGATATTATTGAGTCTCTAGGAGGGGCAATTTTTGTTGATTCTGGATACGATAAGAATATTGTATTTCAGAGTATACGTCCTCTGTTAGAGCCCTTGATTACTCCCGAAACAATAACTCTCCATCCTGCTAGAGAGCTGAATGAACTTTGTTCAAAAATGCATTATGATATGAAGAAACCATTAAAATCATTCGAAAATGATGAGGCTACCATTACTATTGAGGTTGAAGCTAATGGGGTCCCATACAAGCATACATCAACAGCTTCTGATAAGAGGACGGCAATTAAATTAGCAAGCAAAGAAGTGTTGAGGTCCTTGAAGGAGAGTGCTCATTTACCAAAACACCCTCTCCCATCTTCAAACAATGCCTTCACCACTCCACAACTGGTTTTCTCCACCAACTCGACTCAGGAAATGGTTCTAGCTGGTGGAGCAGCAGCAGCACCTCCCCCAAGAGGAAGTGCCGCAGCTGCTACAAGCATGCGCCAAAGGAGGACGACGAGTGGTGGTGCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009892 GO:0009987 GO:0010033 GO:0010216 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051214 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098542 GO:0098586 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko05206 map05206

Pfam Domains

Protein Families

DEAD Dicer_dimer Helicase_C PAZ ResIII Ribonuclease_3 dsrm

Protein Analysis

251

Amino Acids

27.46

Weight (kDa)

9.52

Isoelectric Point (pI)

52.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuclease_3	PF00636	3 - 94	1.5e-07	Ribonuclease III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21215 AT3G21215 AT3G21215 AT3G21215
fragaria_vesca	FvH4_3g14953 FvH4_3g16432 FvH4_4g15800 FvH4_4g32761 FvH4_5g34521 FvH4_6g16241 FvH4_6g37450 FvH4_6g45392 FvH4_7g15921 FvH4_7g31684
malus_domestica	MD09G1158000.v1.1 MD17G1144000.v1.1
prunus_persica	Prupe.3G168000_v2.0.a1
pyrus_communis	pycom09g07680 pycom17g13730
rosa_chinensis	RchiOBHm_Chr2g0150271 RchiOBHm_Chr2g0150291
rosa_laevigata	RLG00000020483
rosa_multiflora	Rmu_sc0001169.1_g000003 Rmu_sc0020705.1_g000001 Rmu_sc0024000.1_g000001 Rmu_sc0038093.1_g000001 Rmu_sc0040821.1_g000001 Rmu_ssc0000020.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097320 Rroxscaffold_2G00097330
rosa_rugosa	Rorug02G0420200 Rorug02G0420300
rosa_samantha	Rh2AG479200 Rh2BG491500 Rh2CG465400 Rh2DG500300
rosa_wichuraiana	Rw2G038980 Rw2G039110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	310
AciI	CCGC	1 cut(s)	702
AfaI	GTAC	3 cut(s)	163, 225, 231
AfiI	CCNNNNNNNGG	1 cut(s)	692
AgsI	TTSAA	5 cut(s)	108, 390, 464, 556, 597
AjnI	CCWGG	1 cut(s)	7
AluBI	AGCT	6 cut(s)	65, 373, 467, 500, 662, 707
AluI	AGCT	6 cut(s)	65, 373, 467, 500, 662, 707
Alw21I	GWGCWC	1 cut(s)	568
Alw26I	GTCTC	2 cut(s)	184, 255
AlwNI	CAGNNNCTG	1 cut(s)	503
Ama87I	CYCGRG	1 cut(s)	60
ApeKI	GCWGC	5 cut(s)	671, 674, 677, 704, 707
Asp700I	GAANNNNTTC	1 cut(s)	654
AspLEI	GCGC	1 cut(s)	723
AspS9I	GGNCC	2 cut(s)	475, 549
AsuHPI	GGTGA	1 cut(s)	601
AsuII	TTCGAA	1 cut(s)	429
AvaI	CYCGRG	1 cut(s)	60
AvaII	GGWCC	2 cut(s)	475, 549
BanII	GRGCYC	1 cut(s)	330
Bbv12I	GWGCWC	1 cut(s)	568
BbvI	GCAGC	5 cut(s)	683, 686, 689, 694, 716
BccI	CCATC	3 cut(s)	174, 366, 598
BceAI	ACGGC	1 cut(s)	531
BciT130I	CCWGG	1 cut(s)	9
BciVI	GTATCC	1 cut(s)	275
BcoDI	GTCTC	2 cut(s)	184, 255
BfaI	CTAG	3 cut(s)	254, 366, 659
BfuI	GTATCC	1 cut(s)	275
BisI	GCNGC	6 cut(s)	672, 675, 678, 702, 705, 708
BlsI	GCNGC	6 cut(s)	673, 676, 679, 703, 706, 709
Bme1390I	CCNGG	1 cut(s)	9
Bme18I	GGWCC	2 cut(s)	475, 549
BmeT110I	CYCGRG	1 cut(s)	60
BmgT120I	GGNCC	2 cut(s)	475, 549
BmiI	GGNNCC	2 cut(s)	476, 477
BmrFI	CCNGG	1 cut(s)	9
Bpu14I	TTCGAA	1 cut(s)	429
BsaAI	YACGTR	1 cut(s)	161
BsaBI	GATNNNNATC	1 cut(s)	184
BsaXI	ACNNNNNCTCC	2 cut(s)	570, 600
Bsc4I	CCNNNNNNNGG	1 cut(s)	692
Bse1I	ACTGG	1 cut(s)	627
Bse8I	GATNNNNATC	1 cut(s)	184
BseBI	CCWGG	1 cut(s)	9
BseGI	GGATG	2 cut(s)	185, 358
BseJI	GATNNNNATC	1 cut(s)	184
BseLI	CCNNNNNNNGG	1 cut(s)	692
BseMII	CTCAG	1 cut(s)	659
BseNI	ACTGG	1 cut(s)	627
BseXI	GCAGC	5 cut(s)	683, 686, 689, 694, 716
BsiHKAI	GWGCWC	1 cut(s)	568
BsiHKCI	CYCGRG	1 cut(s)	60
BslFI	GGGAC	1 cut(s)	461
BslI	CCNNNNNNNGG	1 cut(s)	692
BsmAI	GTCTC	2 cut(s)	184, 255
BsmFI	GGGAC	1 cut(s)	461
BsoBI	CYCGRG	1 cut(s)	60
Bsp119I	TTCGAA	1 cut(s)	429
Bsp1286I	GDGCHC	2 cut(s)	330, 568
Bsp1407I	TGTACA	1 cut(s)	223
BspACI	CCGC	1 cut(s)	702
BspCNI	CTCAG	1 cut(s)	658
BspLI	GGNNCC	2 cut(s)	476, 477
BspT104I	TTCGAA	1 cut(s)	429
BsrGI	TGTACA	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	627
BssNAI	GTATAC	1 cut(s)	311
Bst1107I	GTATAC	1 cut(s)	311
Bst2UI	CCWGG	1 cut(s)	9
Bst4CI	ACNGT	1 cut(s)	139
BstAUI	TGTACA	1 cut(s)	223
BstBAI	YACGTR	1 cut(s)	161
BstBI	TTCGAA	1 cut(s)	429
BstC8I	GCNNGC	2 cut(s)	532, 719
BstDEI	CTNAG	1 cut(s)	645
BstF5I	GGATG	2 cut(s)	185, 358
BstHHI	GCGC	1 cut(s)	723
BstMAI	GTCTC	2 cut(s)	184, 255
BstMWI	GCNNNNNNNGC	3 cut(s)	668, 677, 707
BstNI	CCWGG	1 cut(s)	9
BstNSI	RCATGY	1 cut(s)	721
BstSCI	CCNGG	1 cut(s)	7
BstSNI	TACGTA	1 cut(s)	161
BstV1I	GCAGC	5 cut(s)	683, 686, 689, 694, 716
BstZ17I	GTATAC	1 cut(s)	311
BsuI	GTATCC	1 cut(s)	275
BtsCI	GGATG	2 cut(s)	185, 358
Cac8I	GCNNGC	2 cut(s)	532, 719
CaiI	CAGNNNCTG	1 cut(s)	503
CfoI	GCGC	1 cut(s)	723
Cfr13I	GGNCC	2 cut(s)	475, 549
Csp6I	GTAC	3 cut(s)	162, 224, 230
CviAII	CATG	2 cut(s)	101, 718
CviJI	RGCY	9 cut(s)	65, 77, 328, 373, 443, 467, 500, 662, 707
CviKI_1	RGCY	9 cut(s)	65, 77, 328, 373, 443, 467, 500, 662, 707
CviQI	GTAC	3 cut(s)	162, 224, 230
DdeI	CTNAG	1 cut(s)	645
Eco105I	TACGTA	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	330
Eco47I	GGWCC	2 cut(s)	475, 549
Eco88I	CYCGRG	1 cut(s)	60
EcoO109I	RGGNCCY	2 cut(s)	475, 549
EcoRII	CCWGG	1 cut(s)	7
EcoT22I	ATGCAT	1 cut(s)	399
EcoT38I	GRGCYC	1 cut(s)	330
FaeI	CATG	2 cut(s)	104, 721
FaqI	GGGAC	1 cut(s)	461
FatI	CATG	2 cut(s)	100, 717
FblI	GTMKAC	1 cut(s)	310
Fnu4HI	GCNGC	6 cut(s)	672, 675, 678, 702, 705, 708
FokI	GGATG	2 cut(s)	192, 345
FriOI	GRGCYC	1 cut(s)	330
Fsp4HI	GCNGC	6 cut(s)	672, 675, 678, 702, 705, 708
FspBI	CTAG	3 cut(s)	254, 366, 659
GlaI	GCGC	1 cut(s)	722
GluI	GCNGC	6 cut(s)	672, 675, 678, 702, 705, 708
HhaI	GCGC	1 cut(s)	723
Hin1II	CATG	2 cut(s)	104, 721
Hin6I	GCGC	1 cut(s)	721
HinP1I	GCGC	1 cut(s)	721
HinfI	GANTC	4 cut(s)	185, 248, 275, 643
HphI	GGTGA	1 cut(s)	601
Hpy166II	GTNNAC	3 cut(s)	133, 164, 311
Hpy188I	TCNGA	3 cut(s)	236, 306, 505
Hpy188III	TCNNGA	5 cut(s)	189, 279, 341, 647, 753
Hpy8I	GTNNAC	3 cut(s)	133, 164, 311
Hpy99I	CGWCG	1 cut(s)	739
HpyAV	CCTTC	3 cut(s)	67, 550, 616
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4IV	ACGT	2 cut(s)	160, 313
HpyCH4V	TGCA	2 cut(s)	85, 397
HpyF10VI	GCNNNNNNNGC	3 cut(s)	668, 677, 707
HpyF3I	CTNAG	1 cut(s)	645
HpySE526I	ACGT	2 cut(s)	160, 313
Hsp92II	CATG	2 cut(s)	104, 721
HspAI	GCGC	1 cut(s)	721
KflI	GGGWCCC	1 cut(s)	475
LmnI	GCTCC	1 cut(s)	668
LpnPI	CCDG	8 cut(s)	21, 51, 212, 264, 375, 608, 632, 648
Lsp1109I	GCAGC	5 cut(s)	683, 686, 689, 694, 716
MaeI	CTAG	3 cut(s)	254, 366, 659
MaeII	ACGT	2 cut(s)	160, 313
MaeIII	GTNAC	1 cut(s)	156
MboII	GAAGA	2 cut(s)	421, 585
MhlI	GDGCHC	2 cut(s)	330, 568
MluCI	AATT	4 cut(s)	80, 264, 519, 524
MlyI	GAGTC	2 cut(s)	257, 637
Mph1103I	ATGCAT	1 cut(s)	399
MroXI	GAANNNNTTC	1 cut(s)	654
MseI	TTAA	4 cut(s)	17, 150, 419, 522
MspA1I	CMGCKG	1 cut(s)	707
MspR9I	CCNGG	1 cut(s)	9
MvaI	CCWGG	1 cut(s)	9
MwoI	GCNNNNNNNGC	3 cut(s)	668, 677, 707
NlaIII	CATG	2 cut(s)	104, 721
NlaIV	GGNNCC	2 cut(s)	476, 477
NsiI	ATGCAT	1 cut(s)	399
NspI	RCATGY	1 cut(s)	721
NspV	TTCGAA	1 cut(s)	429
PaeI	GCATGC	1 cut(s)	721
PdmI	GAANNNNTTC	1 cut(s)	654
PfeI	GAWTC	2 cut(s)	185, 275
PkrI	GCNGC	6 cut(s)	673, 676, 679, 703, 706, 709
PleI	GAGTC	2 cut(s)	256, 637
PpsI	GAGTC	2 cut(s)	256, 637
Ppu21I	YACGTR	1 cut(s)	161
PpuMI	RGGWCCY	2 cut(s)	475, 549
Psp5II	RGGWCCY	2 cut(s)	475, 549
Psp6I	CCWGG	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	7
PspN4I	GGNNCC	2 cut(s)	476, 477
PspPI	GGNCC	2 cut(s)	475, 549
PspPPI	RGGWCCY	2 cut(s)	475, 549
PstNI	CAGNNNCTG	1 cut(s)	503
PvuII	CAGCTG	1 cut(s)	707
RsaI	GTAC	3 cut(s)	163, 225, 231
RsaNI	GTAC	3 cut(s)	162, 224, 230
SaqAI	TTAA	4 cut(s)	17, 150, 419, 522
SatI	GCNGC	6 cut(s)	672, 675, 678, 702, 705, 708
Sau96I	GGNCC	2 cut(s)	475, 549
SchI	GAGTC	2 cut(s)	257, 637
ScrFI	CCNGG	1 cut(s)	9
SduI	GDGCHC	2 cut(s)	330, 568
SfuI	TTCGAA	1 cut(s)	429
SinI	GGWCC	2 cut(s)	475, 549
SnaBI	TACGTA	1 cut(s)	161
SphI	GCATGC	1 cut(s)	721
Sse9I	AATT	4 cut(s)	80, 264, 519, 524
SsiI	CCGC	1 cut(s)	702
SspI	AATATT	1 cut(s)	295
SspMI	CTAG	3 cut(s)	254, 366, 659
StyD4I	CCNGG	1 cut(s)	7
TaaI	ACNGT	1 cut(s)	139
TaiI	ACGT	2 cut(s)	163, 316
TaqI	TCGA	3 cut(s)	188, 429, 641
TasI	AATT	4 cut(s)	80, 264, 519, 524
TatI	WGTACW	1 cut(s)	223
TauI	GCSGC	1 cut(s)	704
TfiI	GAWTC	2 cut(s)	185, 275
Tru1I	TTAA	4 cut(s)	17, 150, 419, 522
Tru9I	TTAA	4 cut(s)	17, 150, 419, 522
TseI	GCWGC	5 cut(s)	671, 674, 677, 704, 707
TspDTI	ATGAA	2 cut(s)	393, 422
VpaK11BI	GGWCC	2 cut(s)	475, 549
XceI	RCATGY	1 cut(s)	721
XcmI	CCANNNNNNNNNTGG	1 cut(s)	619
XmiI	GTMKAC	1 cut(s)	310
XmnI	GAANNNNTTC	1 cut(s)	654
XspI	CTAG	3 cut(s)	254, 366, 659
Zsp2I	ATGCAT	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.