Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003051

Physical Location & Seq

Genomic Coordinates Forward (+)

53997980 .. 54000769

Gene Structure 2790 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0420200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGATTCCTGAATATGATTATCTTTTCAAACTTTTGCTCATTGGAGATTCTGGCGTTGGCAAGTCTTGCCTTCTTCTGAGATTTGCGGATGATTCTTACATTGACAGCTACATAAGTACCATTGGTGTTGACTTTAAAATTCGAACAGTGGAGCAGGACGGAAAGGTTGTTAAACTTCAAATTTGGGACACGGCTGGTCAAGAACGTTTCAGAACAATTACAAGCAGCTACTACCGTGGTGCACATGGCATTATCCTTGTCTATGATGTCACCGATCAAGAGAGCTTCAACAATGTGAAGACCTGGCTGCAAGAAATTGATAAATTTGCTGTTGGAAATGTGAACAAGCTGTTGGTTGGAAATAAGTCTGACTTAGCTGACAAGAAAGTGGTATCTTCTGAAGCCAGCAAGGCATTTGCAGATGAGCTAGGAATTCCGTTCTTGGAAACAAGTGCCAAAAACTCCACTAATGTAGACCAAGCATTCATGACTATGGTTACAGAGATAAAGAATAGGATTGCTACTCAACCGATGAGTGCTAACAAGCCATCTACTGTGCATATGCGTGGACAGCCAGTTAACCAGAAGACCACCTGCTGCTCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009892 GO:0009987 GO:0010033 GO:0010216 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051214 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098542 GO:0098586 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko05206 map05206

Pfam Domains

Protein Families

DEAD Dicer_dimer Helicase_C PAZ ResIII Ribonuclease_3 dsrm

Protein Analysis

202

Amino Acids

22.5

Weight (kDa)

6.14

Isoelectric Point (pI)

26.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	9 - 131	4.1e-16	ADP-ribosylation factor family
Ras	PF00071	10 - 170	1.6e-66	Ras family
Roc	PF08477	10 - 124	1.2e-35	Ras of Complex, Roc, domain of DAPkinase
GTP_EFTU	PF00009	45 - 168	9.5e-06	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21215 AT3G21215 AT3G21215 AT3G21215
fragaria_vesca	FvH4_3g14953 FvH4_3g16432 FvH4_4g15800 FvH4_4g32761 FvH4_5g34521 FvH4_6g16241 FvH4_6g37450 FvH4_6g45392 FvH4_7g15921 FvH4_7g31684
malus_domestica	MD09G1158000.v1.1 MD17G1144000.v1.1
prunus_persica	Prupe.3G168000_v2.0.a1
pyrus_communis	pycom09g07680 pycom17g13730
rosa_chinensis	RchiOBHm_Chr2g0150271 RchiOBHm_Chr2g0150291
rosa_laevigata	RLG00000020483
rosa_multiflora	Rmu_sc0001169.1_g000003 Rmu_sc0020705.1_g000001 Rmu_sc0024000.1_g000001 Rmu_sc0038093.1_g000001 Rmu_sc0040821.1_g000001 Rmu_ssc0000020.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097320 Rroxscaffold_2G00097330
rosa_rugosa	Rorug02G0420200 Rorug02G0420300
rosa_samantha	Rh2AG479200 Rh2BG491500 Rh2CG465400 Rh2DG500300
rosa_wichuraiana	Rw2G038980 Rw2G039110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	602
Acc36I	ACCTGC	1 cut(s)	602
AccI	GTMKAC	1 cut(s)	474
AciI	CCGC	1 cut(s)	86
AclI	AACGTT	1 cut(s)	205
AcsI	RAATTY	4 cut(s)	138, 180, 323, 432
AcuI	CTGAAG	1 cut(s)	420
AfaI	GTAC	1 cut(s)	118
AgsI	TTSAA	3 cut(s)	28, 179, 289
AjnI	CCWGG	1 cut(s)	302
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AluBI	AGCT	6 cut(s)	108, 228, 285, 349, 377, 427
AluI	AGCT	6 cut(s)	108, 228, 285, 349, 377, 427
Alw21I	GWGCWC	1 cut(s)	244
Alw44I	GTGCAC	1 cut(s)	240
ApaLI	GTGCAC	1 cut(s)	240
ApeKI	GCWGC	3 cut(s)	225, 307, 597
ApoI	RAATTY	4 cut(s)	138, 180, 323, 432
AsuHPI	GGTGA	1 cut(s)	262
AsuII	TTCGAA	1 cut(s)	142
BaeGI	GKGCMC	1 cut(s)	244
BaeI	ACNNNNGTAYC	2 cut(s)	100, 133
BbsI	GAAGAC	2 cut(s)	305, 593
Bbv12I	GWGCWC	1 cut(s)	244
BbvI	GCAGC	3 cut(s)	237, 294, 584
BccI	CCATC	1 cut(s)	556
BceAI	ACGGC	1 cut(s)	207
BciT130I	CCWGG	1 cut(s)	304
BfaI	CTAG	1 cut(s)	428
BfuAI	ACCTGC	1 cut(s)	602
BglI	GCCNNNNNGGC	1 cut(s)	410
BisI	GCNGC	3 cut(s)	226, 308, 598
BlsI	GCNGC	3 cut(s)	227, 309, 599
Bme1390I	CCNGG	1 cut(s)	304
BmrFI	CCNGG	1 cut(s)	304
BpiI	GAAGAC	2 cut(s)	305, 593
Bpu14I	TTCGAA	1 cut(s)	142
BsaJI	CCNNGG	1 cut(s)	235
Bse1I	ACTGG	1 cut(s)	575
BseBI	CCWGG	1 cut(s)	304
BseDI	CCNNGG	1 cut(s)	235
BseGI	GGATG	1 cut(s)	94
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	1 cut(s)	575
BseSI	GKGCMC	1 cut(s)	244
BseXI	GCAGC	3 cut(s)	237, 294, 584
BsiHKAI	GWGCWC	1 cut(s)	244
BslFI	GGGAC	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	200
BsmI	GAATGC	1 cut(s)	482
Bsp119I	TTCGAA	1 cut(s)	142
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	1 cut(s)	274
BspACI	CCGC	1 cut(s)	86
BspCNI	CTCAG	1 cut(s)	69
BspHI	TCATGA	1 cut(s)	486
BspMI	ACCTGC	1 cut(s)	602
BspT104I	TTCGAA	1 cut(s)	142
BsrI	ACTGG	1 cut(s)	575
BssECI	CCNNGG	1 cut(s)	235
BssMI	GATC	1 cut(s)	274
Bst2UI	CCWGG	1 cut(s)	304
Bst4CI	ACNGT	3 cut(s)	148, 236, 556
BstAPI	GCANNNNNTGC	1 cut(s)	66
BstBI	TTCGAA	1 cut(s)	142
BstC8I	GCNNGC	1 cut(s)	406
BstDEI	CTNAG	2 cut(s)	77, 373
BstDSI	CCRYGG	1 cut(s)	235
BstF5I	GGATG	1 cut(s)	94
BstKTI	GATC	1 cut(s)	277
BstMBI	GATC	1 cut(s)	274
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 410, 571
BstNI	CCWGG	1 cut(s)	304
BstSCI	CCNGG	1 cut(s)	302
BstSLI	GKGCMC	1 cut(s)	244
BstV1I	GCAGC	3 cut(s)	237, 294, 584
BstV2I	GAAGAC	2 cut(s)	305, 593
BtgI	CCRYGG	1 cut(s)	235
BtsCI	GGATG	1 cut(s)	94
BtsIMutI	CAGTG	1 cut(s)	153
BveI	ACCTGC	1 cut(s)	602
Cac8I	GCNNGC	1 cut(s)	406
CciI	TCATGA	1 cut(s)	486
Csp6I	GTAC	1 cut(s)	117
CviAII	CATG	2 cut(s)	245, 487
CviQI	GTAC	1 cut(s)	117
DdeI	CTNAG	2 cut(s)	77, 373
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
DraI	TTTAAA	1 cut(s)	136
Eco57I	CTGAAG	1 cut(s)	420
EcoRI	GAATTC	1 cut(s)	432
EcoRII	CCWGG	1 cut(s)	302
FaeI	CATG	2 cut(s)	248, 490
FaiI	YATR	8 cut(s)	15, 113, 246, 264, 488, 494, 561, 563
FalI	AAGNNNNNCTT	2 cut(s)	356, 388
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	2 cut(s)	244, 486
FauNDI	CATATG	1 cut(s)	561
FblI	GTMKAC	1 cut(s)	474
Fnu4HI	GCNGC	3 cut(s)	226, 308, 598
FokI	GGATG	1 cut(s)	101
Fsp4HI	GCNGC	3 cut(s)	226, 308, 598
FspBI	CTAG	1 cut(s)	428
GluI	GCNGC	3 cut(s)	226, 308, 598
Hin1II	CATG	2 cut(s)	248, 490
HincII	GTYRAC	2 cut(s)	130, 580
HindII	GTYRAC	2 cut(s)	130, 580
HinfI	GANTC	3 cut(s)	4, 47, 92
HpaI	GTTAAC	1 cut(s)	580
HphI	GGTGA	1 cut(s)	262
Hpy166II	GTNNAC	6 cut(s)	130, 242, 343, 475, 569, 580
Hpy188I	TCNGA	4 cut(s)	78, 212, 370, 400
Hpy188III	TCNNGA	5 cut(s)	8, 200, 278, 487, 606
Hpy8I	GTNNAC	6 cut(s)	130, 242, 343, 475, 569, 580
HpyAV	CCTTC	1 cut(s)	80
HpyCH4III	ACNGT	3 cut(s)	148, 236, 556
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	4 cut(s)	242, 310, 419, 559
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 410, 571
HpyF3I	CTNAG	2 cut(s)	77, 373
HpySE526I	ACGT	1 cut(s)	205
Hsp92II	CATG	2 cut(s)	248, 490
KspAI	GTTAAC	1 cut(s)	580
Kzo9I	GATC	1 cut(s)	274
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	9 cut(s)	21, 36, 140, 180, 289, 316, 418, 588, 596
Lsp1109I	GCAGC	3 cut(s)	237, 294, 584
MaeI	CTAG	1 cut(s)	428
MaeII	ACGT	1 cut(s)	205
MaeIII	GTNAC	2 cut(s)	268, 496
MalI	GATC	1 cut(s)	276
MboI	GATC	1 cut(s)	274
MboII	GAAGA	4 cut(s)	65, 310, 387, 598
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	6 cut(s)	138, 180, 216, 315, 323, 432
MmeI	TCCRAC	2 cut(s)	313, 337
MseI	TTAA	3 cut(s)	135, 171, 579
MslI	CAYNNNNRTG	2 cut(s)	491, 564
MspR9I	CCNGG	1 cut(s)	304
Mva1269I	GAATGC	1 cut(s)	482
MvaI	CCWGG	1 cut(s)	304
MwoI	GCNNNNNNNGC	3 cut(s)	66, 410, 571
NdeI	CATATG	1 cut(s)	561
NdeII	GATC	1 cut(s)	274
NlaIII	CATG	2 cut(s)	248, 490
NmuCI	GTSAC	1 cut(s)	268
NspV	TTCGAA	1 cut(s)	142
PagI	TCATGA	1 cut(s)	486
PaqCI	CACCTGC	1 cut(s)	602
PctI	GAATGC	1 cut(s)	482
PfeI	GAWTC	3 cut(s)	4, 47, 92
PkrI	GCNGC	3 cut(s)	227, 309, 599
Psp1406I	AACGTT	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	302
PspGI	CCWGG	1 cut(s)	302
RsaI	GTAC	1 cut(s)	118
RsaNI	GTAC	1 cut(s)	117
RseI	CAYNNNNRTG	2 cut(s)	491, 564
SaqAI	TTAA	3 cut(s)	135, 171, 579
SatI	GCNGC	3 cut(s)	226, 308, 598
Sau3AI	GATC	1 cut(s)	274
ScrFI	CCNGG	1 cut(s)	304
SduI	GDGCHC	1 cut(s)	244
SfuI	TTCGAA	1 cut(s)	142
SmiMI	CAYNNNNRTG	2 cut(s)	491, 564
Sse9I	AATT	6 cut(s)	138, 180, 216, 315, 323, 432
SsiI	CCGC	1 cut(s)	86
SspMI	CTAG	1 cut(s)	428
StyD4I	CCNGG	1 cut(s)	302
TaaI	ACNGT	3 cut(s)	148, 236, 556
TaiI	ACGT	1 cut(s)	208
TaqI	TCGA	1 cut(s)	142
TasI	AATT	6 cut(s)	138, 180, 216, 315, 323, 432
TfiI	GAWTC	3 cut(s)	4, 47, 92
Tru1I	TTAA	3 cut(s)	135, 171, 579
Tru9I	TTAA	3 cut(s)	135, 171, 579
TscAI	CASTG	1 cut(s)	153
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	3 cut(s)	225, 307, 597
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	1 cut(s)	475
TspGWI	ACGGA	2 cut(s)	174, 426
TspRI	CASTG	1 cut(s)	153
VneI	GTGCAC	1 cut(s)	240
XapI	RAATTY	4 cut(s)	138, 180, 323, 432
XmiI	GTMKAC	1 cut(s)	474
XspI	CTAG	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.