Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040821.1

Orthogroup ID

OG0003051

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 573

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040821.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

gtactaggagatattatagagtctcttggaggggcaatttttgttgattctggatatgataagaatgttgtatttcagagtatacgtcctctgttagagcccttgattactccagaaatgataactctccatcctgatggagagctgaatgaactttgttcaaaaatgcattatgacaggaagaaatcaatatcattcaaaaatgatatggctaccattactattgaggttgaaggtaatggtgtcacatacaagcatacatcaacagctcttgataagtggacggcaagtaaattagcaagcgaagaagttttgaggtccttgaaagagagtgctcatttatcaaaagacgctctcccatcttcaaacaaccccttcgccactccacaactcgtttccttcaccaagtcgactcaggaaatggttctagccagtggagcagcagcagcagctcccccaacaggaagtgctgctgctgctgcaagcatgcgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009892 GO:0009987 GO:0010033 GO:0010216 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051214 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098542 GO:0098586 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko05206 map05206

Pfam Domains

Protein Families

DEAD Dicer_dimer Helicase_C PAZ ResIII Ribonuclease_3 dsrm

Protein Analysis

164

Amino Acids

17.51

Weight (kDa)

5.54

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21215 AT3G21215 AT3G21215 AT3G21215
fragaria_vesca	FvH4_3g14953 FvH4_3g16432 FvH4_4g15800 FvH4_4g32761 FvH4_5g34521 FvH4_6g16241 FvH4_6g37450 FvH4_6g45392 FvH4_7g15921 FvH4_7g31684
malus_domestica	MD09G1158000.v1.1 MD17G1144000.v1.1
prunus_persica	Prupe.3G168000_v2.0.a1
pyrus_communis	pycom09g07680 pycom17g13730
rosa_chinensis	RchiOBHm_Chr2g0150271 RchiOBHm_Chr2g0150291
rosa_laevigata	RLG00000020483
rosa_multiflora	Rmu_sc0001169.1_g000003 Rmu_sc0020705.1_g000001 Rmu_sc0024000.1_g000001 Rmu_sc0038093.1_g000001 Rmu_sc0040821.1_g000001 Rmu_ssc0000020.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097320 Rroxscaffold_2G00097330
rosa_rugosa	Rorug02G0420200 Rorug02G0420300
rosa_samantha	Rh2AG479200 Rh2BG491500 Rh2CG465400 Rh2DG500300
rosa_wichuraiana	Rw2G038980 Rw2G039110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	82, 410
AfaI	GTAC	1 cut(s)	3
AfiI	CCNNNNNNNGG	1 cut(s)	461
AgsI	TTSAA	5 cut(s)	162, 199, 233, 325, 366
AluBI	AGCT	3 cut(s)	145, 269, 452
AluI	AGCT	3 cut(s)	145, 269, 452
Alw21I	GWGCWC	1 cut(s)	337
Alw26I	GTCTC	1 cut(s)	27
ApeKI	GCWGC	8 cut(s)	440, 443, 446, 449, 470, 473, 476, 479
Asp700I	GAANNNNTTC	1 cut(s)	423
AspLEI	GCGC	1 cut(s)	492
AspS9I	GGNCC	1 cut(s)	318
AsuHPI	GGTGA	1 cut(s)	394
AvaII	GGWCC	1 cut(s)	318
BanII	GRGCYC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	337
BbvI	GCAGC	8 cut(s)	452, 455, 457, 458, 460, 461, 463, 466
BccI	CCATC	3 cut(s)	131, 138, 367
BceAI	ACGGC	1 cut(s)	300
BcoDI	GTCTC	1 cut(s)	27
BfaI	CTAG	2 cut(s)	5, 428
BisI	GCNGC	8 cut(s)	441, 444, 447, 450, 471, 474, 477, 480
BlsI	GCNGC	8 cut(s)	442, 445, 448, 451, 472, 475, 478, 481
Bme18I	GGWCC	1 cut(s)	318
BmgT120I	GGNCC	1 cut(s)	318
BpmI	CTGGAG	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	1 cut(s)	461
Bse1I	ACTGG	1 cut(s)	432
BseGI	GGATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	1 cut(s)	461
BseMII	CTCAG	1 cut(s)	428
BseNI	ACTGG	1 cut(s)	432
BseXI	GCAGC	8 cut(s)	452, 455, 457, 458, 460, 461, 463, 466
BsiHKAI	GWGCWC	1 cut(s)	337
BslI	CCNNNNNNNGG	1 cut(s)	461
BsmAI	GTCTC	1 cut(s)	27
Bsp1286I	GDGCHC	2 cut(s)	102, 337
BspCNI	CTCAG	1 cut(s)	427
BsrI	ACTGG	1 cut(s)	432
BssNAI	GTATAC	1 cut(s)	83
Bst1107I	GTATAC	1 cut(s)	83
BstC8I	GCNNGC	3 cut(s)	301, 484, 488
BstDEI	CTNAG	1 cut(s)	414
BstF5I	GGATG	1 cut(s)	130
BstHHI	GCGC	1 cut(s)	492
BstMAI	GTCTC	1 cut(s)	27
BstMWI	GCNNNNNNNGC	5 cut(s)	437, 446, 449, 476, 479
BstNSI	RCATGY	1 cut(s)	490
BstV1I	GCAGC	8 cut(s)	452, 455, 457, 458, 460, 461, 463, 466
BstXI	CCANNNNNNTGG	1 cut(s)	137
BstZ17I	GTATAC	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	130
BtsIMutI	CAGTG	1 cut(s)	439
Cac8I	GCNNGC	3 cut(s)	301, 484, 488
CfoI	GCGC	1 cut(s)	492
Cfr13I	GGNCC	1 cut(s)	318
CseI	GACGC	1 cut(s)	359
Csp6I	GTAC	1 cut(s)	2
CviAII	CATG	1 cut(s)	487
CviJI	RGCY	6 cut(s)	100, 145, 212, 269, 431, 452
CviKI_1	RGCY	6 cut(s)	100, 145, 212, 269, 431, 452
CviQI	GTAC	1 cut(s)	2
DdeI	CTNAG	1 cut(s)	414
Eco24I	GRGCYC	1 cut(s)	102
Eco47I	GGWCC	1 cut(s)	318
EcoO109I	RGGNCCY	1 cut(s)	318
EcoT22I	ATGCAT	1 cut(s)	171
EcoT38I	GRGCYC	1 cut(s)	102
FaeI	CATG	1 cut(s)	490
FaiI	YATR	8 cut(s)	17, 57, 83, 174, 209, 250, 258, 488
FatI	CATG	1 cut(s)	486
FblI	GTMKAC	2 cut(s)	82, 410
Fnu4HI	GCNGC	8 cut(s)	441, 444, 447, 450, 471, 474, 477, 480
FokI	GGATG	1 cut(s)	117
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	8 cut(s)	441, 444, 447, 450, 471, 474, 477, 480
FspBI	CTAG	2 cut(s)	5, 428
GlaI	GCGC	1 cut(s)	491
GluI	GCNGC	8 cut(s)	441, 444, 447, 450, 471, 474, 477, 480
GsuI	CTGGAG	1 cut(s)	96
HgaI	GACGC	1 cut(s)	359
HhaI	GCGC	1 cut(s)	492
Hin1II	CATG	1 cut(s)	490
Hin6I	GCGC	1 cut(s)	490
HinP1I	GCGC	1 cut(s)	490
HincII	GTYRAC	1 cut(s)	411
HindII	GTYRAC	1 cut(s)	411
HinfI	GANTC	3 cut(s)	20, 47, 412
HphI	GGTGA	1 cut(s)	394
Hpy166II	GTNNAC	3 cut(s)	83, 282, 411
Hpy188I	TCNGA	1 cut(s)	78
Hpy188III	TCNNGA	5 cut(s)	51, 113, 134, 272, 416
Hpy8I	GTNNAC	3 cut(s)	83, 282, 411
HpyAV	CCTTC	3 cut(s)	227, 385, 409
HpyCH4IV	ACGT	1 cut(s)	85
HpyCH4V	TGCA	2 cut(s)	169, 482
HpyF10VI	GCNNNNNNNGC	5 cut(s)	437, 446, 449, 476, 479
HpyF3I	CTNAG	1 cut(s)	414
HpySE526I	ACGT	1 cut(s)	85
Hsp92II	CATG	1 cut(s)	490
HspAI	GCGC	1 cut(s)	490
LmnI	GCTCC	2 cut(s)	437, 457
LpnPI	CCDG	7 cut(s)	36, 126, 147, 163, 401, 445, 447
Lsp1109I	GCAGC	8 cut(s)	452, 455, 457, 458, 460, 461, 463, 466
MaeI	CTAG	2 cut(s)	5, 428
MaeII	ACGT	1 cut(s)	85
MaeIII	GTNAC	1 cut(s)	244
MboII	GAAGA	3 cut(s)	193, 317, 354
MhlI	GDGCHC	2 cut(s)	102, 337
MluCI	AATT	2 cut(s)	36, 293
MlyI	GAGTC	2 cut(s)	29, 406
MnlI	CCTC	4 cut(s)	23, 99, 220, 309
Mph1103I	ATGCAT	1 cut(s)	171
MroXI	GAANNNNTTC	1 cut(s)	423
MslI	CAYNNNNRTG	1 cut(s)	135
MwoI	GCNNNNNNNGC	5 cut(s)	437, 446, 449, 476, 479
NlaIII	CATG	1 cut(s)	490
NmuCI	GTSAC	1 cut(s)	244
NsiI	ATGCAT	1 cut(s)	171
NspI	RCATGY	1 cut(s)	490
PaeI	GCATGC	1 cut(s)	490
PdmI	GAANNNNTTC	1 cut(s)	423
PfeI	GAWTC	1 cut(s)	47
PkrI	GCNGC	8 cut(s)	442, 445, 448, 451, 472, 475, 478, 481
PleI	GAGTC	2 cut(s)	28, 406
PpsI	GAGTC	2 cut(s)	28, 406
PpuMI	RGGWCCY	1 cut(s)	318
Psp5II	RGGWCCY	1 cut(s)	318
PspPI	GGNCC	1 cut(s)	318
PspPPI	RGGWCCY	1 cut(s)	318
RsaI	GTAC	1 cut(s)	3
RsaNI	GTAC	1 cut(s)	2
RseI	CAYNNNNRTG	1 cut(s)	135
SalI	GTCGAC	1 cut(s)	409
SatI	GCNGC	8 cut(s)	441, 444, 447, 450, 471, 474, 477, 480
Sau96I	GGNCC	1 cut(s)	318
SchI	GAGTC	2 cut(s)	29, 406
SduI	GDGCHC	2 cut(s)	102, 337
SetI	ASST	7 cut(s)	88, 147, 231, 238, 271, 320, 454
SinI	GGWCC	1 cut(s)	318
SmiMI	CAYNNNNRTG	1 cut(s)	135
SphI	GCATGC	1 cut(s)	490
Sse9I	AATT	2 cut(s)	36, 293
SspMI	CTAG	2 cut(s)	5, 428
TaiI	ACGT	1 cut(s)	88
TaqI	TCGA	1 cut(s)	410
TasI	AATT	2 cut(s)	36, 293
TfiI	GAWTC	1 cut(s)	47
TscAI	CASTG	1 cut(s)	439
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	8 cut(s)	440, 443, 446, 449, 470, 473, 476, 479
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	1 cut(s)	165
TspRI	CASTG	1 cut(s)	439
VpaK11BI	GGWCC	1 cut(s)	318
XceI	RCATGY	1 cut(s)	490
XmiI	GTMKAC	2 cut(s)	82, 410
XmnI	GAANNNNTTC	1 cut(s)	423
XspI	CTAG	2 cut(s)	5, 428
Zsp2I	ATGCAT	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.