Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003051

Physical Location & Seq

Genomic Coordinates Forward (+)

10226997 .. 10227287

Gene Structure 291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g16241.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGCCCCGGCGGCTGCCCCTCCTCCTCCCCCGGCCGTCGTTGCCGTCGTTGCCGCCGCGCCTCCACCTCCTCCTCACCACCTCGTCGACAACCCCAACCGGCCCGCCAACGACGAGGTCCACACCATCTTCATCACCGGTCTTCCCGAAGATGTCAAGGAGAGGGAGATACAGAACCTCCTGAGATGGCTTCCCGGCTACGAGGCCTCTCAGGTCCCTCTAGAAAGTCAAGTTAGCCCGGGGCAGCAACAGTCTGGGATCAGTATACTTACACTTGACATCAGGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009790 GO:0009887 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0030510 GO:0030514 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035239 GO:0035295 GO:0042127 GO:0042802 GO:0042803 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0046983 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048660 GO:0048661 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051147 GO:0051148 GO:0051150 GO:0051151 GO:0051171 GO:0051252 GO:0055123 GO:0060255 GO:0065007 GO:0080090 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

97

Amino Acids

10.22

Weight (kDa)

4.87

Isoelectric Point (pI)

75.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21215 AT3G21215 AT3G21215 AT3G21215
fragaria_vesca	FvH4_3g14953 FvH4_3g16432 FvH4_4g15800 FvH4_4g32761 FvH4_5g34521 FvH4_6g16241 FvH4_6g37450 FvH4_6g45392 FvH4_7g15921 FvH4_7g31684
malus_domestica	MD09G1158000.v1.1 MD17G1144000.v1.1
prunus_persica	Prupe.3G168000_v2.0.a1
pyrus_communis	pycom09g07680 pycom17g13730
rosa_chinensis	RchiOBHm_Chr2g0150271 RchiOBHm_Chr2g0150291
rosa_laevigata	RLG00000020483
rosa_multiflora	Rmu_sc0001169.1_g000003 Rmu_sc0020705.1_g000001 Rmu_sc0024000.1_g000001 Rmu_sc0038093.1_g000001 Rmu_sc0040821.1_g000001 Rmu_ssc0000020.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097320 Rroxscaffold_2G00097330
rosa_rugosa	Rorug02G0420200 Rorug02G0420300
rosa_samantha	Rh2AG479200 Rh2BG491500 Rh2CG465400 Rh2DG500300
rosa_wichuraiana	Rw2G038980 Rw2G039110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	87, 265
AccII	CGCG	1 cut(s)	59
AciI	CCGC	4 cut(s)	11, 54, 57, 105
AclWI	GGATC	1 cut(s)	266
AcoI	YGGCCR	1 cut(s)	33
AgeI	ACCGGT	1 cut(s)	137
AlwI	GGATC	1 cut(s)	266
Ama87I	CYCGRG	1 cut(s)	238
AoxI	GGCC	5 cut(s)	3, 33, 101, 204, 285
ApeKI	GCWGC	2 cut(s)	14, 244
AsiGI	ACCGGT	1 cut(s)	137
AspLEI	GCGC	1 cut(s)	61
AspS9I	GGNCC	5 cut(s)	4, 102, 118, 214, 285
AsuC2I	CCSGG	5 cut(s)	8, 32, 195, 239, 240
AsuHPI	GGTGA	2 cut(s)	68, 127
AvaI	CYCGRG	1 cut(s)	238
AvaII	GGWCC	2 cut(s)	118, 214
BbsI	GAAGAC	1 cut(s)	134
BbvI	GCAGC	1 cut(s)	256
BccI	CCATC	2 cut(s)	134, 180
BceAI	ACGGC	2 cut(s)	20, 29
BcnI	CCSGG	5 cut(s)	8, 32, 195, 239, 240
BfaI	CTAG	2 cut(s)	221, 289
BglI	GCCNNNNNGGC	1 cut(s)	11
BisI	GCNGC	5 cut(s)	12, 15, 54, 57, 245
BlsI	GCNGC	5 cut(s)	13, 16, 55, 58, 246
Bme1390I	CCNGG	5 cut(s)	8, 32, 195, 239, 240
Bme18I	GGWCC	2 cut(s)	118, 214
BmeT110I	CYCGRG	1 cut(s)	238
BmgT120I	GGNCC	5 cut(s)	4, 102, 118, 214, 285
BmiI	GGNNCC	2 cut(s)	6, 216
BmrFI	CCNGG	5 cut(s)	8, 32, 195, 239, 240
BpiI	GAAGAC	1 cut(s)	134
BpuMI	CCSGG	5 cut(s)	8, 32, 195, 239, 240
BsaJI	CCNNGG	4 cut(s)	6, 30, 238, 239
BsaWI	WCCGGW	1 cut(s)	137
BsaXI	ACNNNNNCTCC	2 cut(s)	162, 192
Bse118I	RCCGGY	2 cut(s)	99, 137
BseDI	CCNNGG	4 cut(s)	6, 30, 238, 239
BseMII	CTCAG	2 cut(s)	173, 224
BseRI	GAGGAG	4 cut(s)	12, 15, 60, 63
BseX3I	CGGCCG	1 cut(s)	33
BseXI	GCAGC	1 cut(s)	256
Bsh1236I	CGCG	1 cut(s)	59
Bsh1285I	CGRYCG	1 cut(s)	36
BshFI	GGCC	5 cut(s)	5, 35, 103, 206, 287
BshTI	ACCGGT	1 cut(s)	137
BsiEI	CGRYCG	1 cut(s)	36
BsiHKCI	CYCGRG	1 cut(s)	238
BsiSI	CCGG	6 cut(s)	8, 32, 100, 138, 195, 239
BslFI	GGGAC	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	200
BsnI	GGCC	5 cut(s)	5, 35, 103, 206, 287
BsoBI	CYCGRG	1 cut(s)	238
Bsp143I	GATC	1 cut(s)	258
BspACI	CCGC	4 cut(s)	11, 54, 57, 105
BspANI	GGCC	5 cut(s)	5, 35, 103, 206, 287
BspCNI	CTCAG	2 cut(s)	174, 223
BspFNI	CGCG	1 cut(s)	59
BspLI	GGNNCC	2 cut(s)	6, 216
BspPI	GGATC	1 cut(s)	266
BsrFI	RCCGGY	2 cut(s)	99, 137
BssAI	RCCGGY	2 cut(s)	99, 137
BssECI	CCNNGG	4 cut(s)	6, 30, 238, 239
BssMI	GATC	1 cut(s)	258
BssNAI	GTATAC	1 cut(s)	266
Bst1107I	GTATAC	1 cut(s)	266
Bst4CI	ACNGT	1 cut(s)	252
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	2 cut(s)	182, 210
BstFNI	CGCG	1 cut(s)	59
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	1 cut(s)	261
BstMBI	GATC	1 cut(s)	258
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 41, 50
BstSCI	CCNGG	5 cut(s)	6, 30, 193, 237, 238
BstUI	CGCG	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	256
BstV2I	GAAGAC	1 cut(s)	134
BstZ17I	GTATAC	1 cut(s)	266
BstZI	CGGCCG	1 cut(s)	33
BsuRI	GGCC	5 cut(s)	5, 35, 103, 206, 287
Cac8I	GCNNGC	1 cut(s)	105
CfoI	GCGC	1 cut(s)	61
Cfr10I	RCCGGY	2 cut(s)	99, 137
Cfr13I	GGNCC	5 cut(s)	4, 102, 118, 214, 285
Cfr9I	CCCGGG	1 cut(s)	238
CspAI	ACCGGT	1 cut(s)	137
CviJI	RGCY	9 cut(s)	5, 14, 35, 103, 190, 198, 206, 237, 287
CviKI_1	RGCY	9 cut(s)	5, 14, 35, 103, 190, 198, 206, 237, 287
DdeI	CTNAG	2 cut(s)	182, 210
DpnI	GATC	1 cut(s)	260
DpnII	GATC	1 cut(s)	258
EaeI	YGGCCR	1 cut(s)	33
EagI	CGGCCG	1 cut(s)	33
EclXI	CGGCCG	1 cut(s)	33
Eco147I	AGGCCT	1 cut(s)	206
Eco47I	GGWCC	2 cut(s)	118, 214
Eco52I	CGGCCG	1 cut(s)	33
Eco88I	CYCGRG	1 cut(s)	238
EcoO109I	RGGNCCY	2 cut(s)	214, 285
FaiI	YATR	1 cut(s)	266
FaqI	GGGAC	1 cut(s)	200
FauI	CCCGC	1 cut(s)	112
FblI	GTMKAC	2 cut(s)	87, 265
Fnu4HI	GCNGC	5 cut(s)	12, 15, 54, 57, 245
Fsp4HI	GCNGC	5 cut(s)	12, 15, 54, 57, 245
FspBI	CTAG	2 cut(s)	221, 289
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	5 cut(s)	12, 15, 54, 57, 245
HaeIII	GGCC	5 cut(s)	5, 35, 103, 206, 287
HapII	CCGG	6 cut(s)	8, 32, 100, 138, 195, 239
HhaI	GCGC	1 cut(s)	61
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HpaII	CCGG	6 cut(s)	8, 32, 100, 138, 195, 239
HphI	GGTGA	2 cut(s)	68, 127
Hpy166II	GTNNAC	3 cut(s)	88, 121, 266
Hpy188III	TCNNGA	3 cut(s)	146, 181, 221
Hpy8I	GTNNAC	3 cut(s)	88, 121, 266
Hpy99I	CGWCG	4 cut(s)	41, 50, 89, 116
HpyCH4III	ACNGT	1 cut(s)	252
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 41, 50
HpyF3I	CTNAG	2 cut(s)	182, 210
HspAI	GCGC	1 cut(s)	59
Kzo9I	GATC	1 cut(s)	258
Lsp1109I	GCAGC	1 cut(s)	256
MaeI	CTAG	2 cut(s)	221, 289
MalI	GATC	1 cut(s)	260
MboI	GATC	1 cut(s)	258
MboII	GAAGA	3 cut(s)	121, 134, 161
MspI	CCGG	6 cut(s)	8, 32, 100, 138, 195, 239
MspR9I	CCNGG	5 cut(s)	8, 32, 195, 239, 240
MvnI	CGCG	1 cut(s)	59
MwoI	GCNNNNNNNGC	3 cut(s)	11, 41, 50
NciI	CCSGG	5 cut(s)	8, 32, 195, 239, 240
NdeII	GATC	1 cut(s)	258
NlaIV	GGNNCC	2 cut(s)	6, 216
PceI	AGGCCT	1 cut(s)	206
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PflFI	GACNNNGTC	1 cut(s)	116
PinAI	ACCGGT	1 cut(s)	137
PkrI	GCNGC	5 cut(s)	13, 16, 55, 58, 246
PpuMI	RGGWCCY	1 cut(s)	214
Psp5II	RGGWCCY	1 cut(s)	214
PspN4I	GGNNCC	2 cut(s)	6, 216
PspPI	GGNCC	5 cut(s)	4, 102, 118, 214, 285
PspPPI	RGGWCCY	1 cut(s)	214
PsyI	GACNNNGTC	1 cut(s)	116
SalI	GTCGAC	1 cut(s)	86
SatI	GCNGC	5 cut(s)	12, 15, 54, 57, 245
Sau3AI	GATC	1 cut(s)	258
Sau96I	GGNCC	5 cut(s)	4, 102, 118, 214, 285
ScrFI	CCNGG	5 cut(s)	8, 32, 195, 239, 240
SetI	ASST	5 cut(s)	70, 84, 120, 180, 216
SinI	GGWCC	2 cut(s)	118, 214
SmaI	CCCGGG	1 cut(s)	240
SseBI	AGGCCT	1 cut(s)	206
SsiI	CCGC	4 cut(s)	11, 54, 57, 105
SspMI	CTAG	2 cut(s)	221, 289
StuI	AGGCCT	1 cut(s)	206
StyD4I	CCNGG	5 cut(s)	6, 30, 193, 237, 238
TaaI	ACNGT	1 cut(s)	252
TaqI	TCGA	1 cut(s)	87
TauI	GCSGC	3 cut(s)	14, 56, 59
TseI	GCWGC	2 cut(s)	14, 244
TspDTI	ATGAA	1 cut(s)	121
TspMI	CCCGGG	1 cut(s)	238
Tth111I	GACNNNGTC	1 cut(s)	116
VpaK11BI	GGWCC	2 cut(s)	118, 214
XbaI	TCTAGA	1 cut(s)	220
XmaI	CCCGGG	1 cut(s)	238
XmiI	GTMKAC	2 cut(s)	87, 265
XspI	CTAG	2 cut(s)	221, 289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.