Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003051

Physical Location & Seq

Genomic Coordinates Forward (+)

63925626 .. 63933271

Gene Structure 7646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G038980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGCCGGTGCGGGCATCCACCCATGCCACCAGCAATGGGTGCCGGCAGCCTCCCCGCCTCCTCCTCCGGCCGTCTTCGCTGCCTCCCCTCCTCCTCCCCCTCACCACGTCGTCGACAACCCGAACCGACCCGCCAACAACGAGGTCCGCACCATTTTCATCACTGATCTTCCCGAAGATGTGAAGGAGAGGGAGATACAGAACCTCCTCAGATGGTTGCCGGGCTACGAGGCATCCCAGGTCAACTACAAAGGAGAAGCCCATGAGCTTCACGCTCTTCGCCTCTGCTCAGCAAACTATTGCTGCAAAAGATGCTCTTCAGGTTCGTTCAGTATGGTTTTCGATACACAATCGAGGGCGGTGTTGCATACAGAGATGGTAATGAAGAATCTTTTGGTGAAAAGAGGGATTGTAGGGGATTCAAATGCTTATGATCAAAGTAAACGATTGCGTACTGGTGACTACACGCAGGCTGGTTATTCCAGTCCAGTGCCTTTTCATCTGCCACCGCCACCTGTTTGGGGACCACACGGGTATATGGCACCTCCTCCATATGATCCATATGGTTATCCTGTTGCTCCAGTACCAATGCCCCCTTCTGTTCCTGTACCAGCACCCAGCAGTTATGTACCGGTTCTGAACACAAAAGATAATCCACCATGCAATACCTTATTTATTGGCAATCTAGGAGAGAGCATTAACGAGGAAGAACTGGGGGGCCTATTCAGCTCACAACCGGGATTTAAGCAAATGAAGATCTTGAGACAGGAAAGGCATACTGTTTGCTTCATTGAGCTTGAAGATGTAAACAGTGCCACCACTGTAAACCACAATTTTCAGGGTGCTGATATCCCCAGTTCTGGTTCTATAGGCATGAGAATACAATATCCTTTTATTTCTTTGTTATCGCTGATCCTTTTGAACCCATTTGTTAAAAGGAAGGATGGGAACTACCCTGGTGCTGTCCCTGCTGCAAATGGAGCCCCACCAGCTATGACATACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009790 GO:0009887 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0030510 GO:0030514 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035239 GO:0035295 GO:0042127 GO:0042802 GO:0042803 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0046983 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048660 GO:0048661 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051147 GO:0051148 GO:0051150 GO:0051151 GO:0051171 GO:0051252 GO:0055123 GO:0060255 GO:0065007 GO:0080090 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

335

Amino Acids

36.63

Weight (kDa)

6.59

Isoelectric Point (pI)

65.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	224 - 284	1.9e-06	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21215 AT3G21215 AT3G21215 AT3G21215
fragaria_vesca	FvH4_3g14953 FvH4_3g16432 FvH4_4g15800 FvH4_4g32761 FvH4_5g34521 FvH4_6g16241 FvH4_6g37450 FvH4_6g45392 FvH4_7g15921 FvH4_7g31684
malus_domestica	MD09G1158000.v1.1 MD17G1144000.v1.1
prunus_persica	Prupe.3G168000_v2.0.a1
pyrus_communis	pycom09g07680 pycom17g13730
rosa_chinensis	RchiOBHm_Chr2g0150271 RchiOBHm_Chr2g0150291
rosa_laevigata	RLG00000020483
rosa_multiflora	Rmu_sc0001169.1_g000003 Rmu_sc0020705.1_g000001 Rmu_sc0024000.1_g000001 Rmu_sc0038093.1_g000001 Rmu_sc0040821.1_g000001 Rmu_ssc0000020.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097320 Rroxscaffold_2G00097330
rosa_rugosa	Rorug02G0420200 Rorug02G0420300
rosa_samantha	Rh2AG479200 Rh2BG491500 Rh2CG465400 Rh2DG500300
rosa_wichuraiana	Rw2G038980 Rw2G039110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	40, 541
AccI	GTMKAC	1 cut(s)	114
AciI	CCGC	6 cut(s)	11, 56, 132, 148, 359, 509
AclWI	GGATC	2 cut(s)	551, 907
AcoI	YGGCCR	2 cut(s)	3, 69
AcuI	CTGAAG	1 cut(s)	303
AfaI	GTAC	4 cut(s)	454, 585, 609, 630
AfiI	CCNNNNNNNGG	3 cut(s)	37, 521, 860
AgeI	ACCGGT	1 cut(s)	631
AgsI	TTSAA	3 cut(s)	423, 800, 922
AjiI	CACGTC	1 cut(s)	109
AjnI	CCWGG	2 cut(s)	237, 955
AjuI	GAANNNNNNNTTGG	4 cut(s)	377, 409, 580, 612
AluBI	AGCT	4 cut(s)	268, 729, 796, 992
AluI	AGCT	4 cut(s)	268, 729, 796, 992
Alw26I	GTCTC	1 cut(s)	757
AlwI	GGATC	2 cut(s)	551, 907
AoxI	GGCC	3 cut(s)	3, 69, 718
ApeKI	GCWGC	4 cut(s)	47, 80, 303, 971
AsiGI	ACCGGT	1 cut(s)	631
AspS9I	GGNCC	3 cut(s)	145, 524, 718
AsuC2I	CCSGG	2 cut(s)	222, 738
AsuHPI	GGTGA	3 cut(s)	95, 409, 470
AvaII	GGWCC	2 cut(s)	145, 524
BanI	GGYRCC	2 cut(s)	40, 541
BanII	GRGCYC	1 cut(s)	985
BbsI	GAAGAC	1 cut(s)	67
BbvI	GCAGC	4 cut(s)	59, 67, 290, 958
BccI	CCATC	3 cut(s)	207, 370, 938
BceAI	ACGGC	1 cut(s)	56
BciT130I	CCWGG	2 cut(s)	239, 957
BclI	TGATCA	1 cut(s)	433
BcnI	CCSGG	2 cut(s)	222, 738
BcoDI	GTCTC	1 cut(s)	757
BfaI	CTAG	1 cut(s)	686
BfmI	CTRYAG	1 cut(s)	867
BglII	AGATCT	1 cut(s)	756
BisI	GCNGC	4 cut(s)	48, 81, 304, 972
BlpI	GCTNAGC	1 cut(s)	289
BlsI	GCNGC	4 cut(s)	49, 82, 305, 973
Bme1390I	CCNGG	4 cut(s)	222, 239, 738, 957
Bme18I	GGWCC	2 cut(s)	145, 524
BmgBI	CACGTC	1 cut(s)	109
BmgT120I	GGNCC	3 cut(s)	145, 524, 718
BmiI	GGNNCC	5 cut(s)	42, 525, 543, 719, 982
BmrFI	CCNGG	4 cut(s)	222, 239, 738, 957
BmrI	ACTGGG	2 cut(s)	722, 849
BmsI	GCATC	3 cut(s)	24, 242, 302
BmuI	ACTGGG	2 cut(s)	722, 849
BpiI	GAAGAC	1 cut(s)	67
BpmI	CTGGAG	1 cut(s)	564
Bpu1102I	GCTNAGC	1 cut(s)	289
BpuEI	CTTGAG	1 cut(s)	781
BpuMI	CCSGG	2 cut(s)	222, 738
BsaJI	CCNNGG	2 cut(s)	237, 955
BsaWI	WCCGGW	1 cut(s)	631
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 521, 860
Bse118I	RCCGGY	3 cut(s)	5, 43, 631
Bse1I	ACTGG	7 cut(s)	460, 483, 488, 581, 717, 855, 1003
Bse3DI	GCAATG	1 cut(s)	41
BseBI	CCWGG	2 cut(s)	239, 957
BseDI	CCNNGG	2 cut(s)	237, 955
BseGI	GGATG	3 cut(s)	15, 233, 949
BseLI	CCNNNNNNNGG	3 cut(s)	37, 521, 860
BseMI	GCAATG	1 cut(s)	41
BseMII	CTCAG	2 cut(s)	223, 303
BseNI	ACTGG	7 cut(s)	460, 483, 488, 581, 717, 855, 1003
BseRI	GAGGAG	6 cut(s)	51, 54, 81, 84, 197, 537
BseX3I	CGGCCG	1 cut(s)	69
BseXI	GCAGC	4 cut(s)	59, 67, 290, 958
BseYI	CCCAGC	1 cut(s)	617
Bsh1285I	CGRYCG	1 cut(s)	72
BshFI	GGCC	3 cut(s)	5, 71, 720
BshNI	GGYRCC	2 cut(s)	40, 541
BshTI	ACCGGT	1 cut(s)	631
BsiEI	CGRYCG	1 cut(s)	72
BsiSI	CCGG	6 cut(s)	6, 44, 68, 221, 632, 737
BslFI	GGGAC	2 cut(s)	537, 950
BslI	CCNNNNNNNGG	3 cut(s)	37, 521, 860
BsmAI	GTCTC	1 cut(s)	757
BsmFI	GGGAC	2 cut(s)	537, 950
BsnI	GGCC	3 cut(s)	5, 71, 720
Bsp1286I	GDGCHC	1 cut(s)	985
Bsp143I	GATC	5 cut(s)	166, 433, 556, 756, 912
Bsp1720I	GCTNAGC	1 cut(s)	289
BspACI	CCGC	6 cut(s)	11, 56, 132, 148, 359, 509
BspANI	GGCC	3 cut(s)	5, 71, 720
BspCNI	CTCAG	2 cut(s)	222, 302
BspLI	GGNNCC	5 cut(s)	42, 525, 543, 719, 982
BspPI	GGATC	2 cut(s)	551, 907
BspQI	GCTCTTC	2 cut(s)	282, 322
BspT107I	GGYRCC	2 cut(s)	40, 541
BsrDI	GCAATG	1 cut(s)	41
BsrFI	RCCGGY	3 cut(s)	5, 43, 631
BsrI	ACTGG	7 cut(s)	460, 483, 488, 581, 717, 855, 1003
BssAI	RCCGGY	3 cut(s)	5, 43, 631
BssECI	CCNNGG	2 cut(s)	237, 955
BssMI	GATC	5 cut(s)	166, 433, 556, 756, 912
Bst2UI	CCWGG	2 cut(s)	239, 957
Bst4CI	ACNGT	3 cut(s)	781, 812, 823
Bst6I	CTCTTC	2 cut(s)	282, 322
BstAPI	GCANNNNNTGC	2 cut(s)	40, 312
BstC8I	GCNNGC	3 cut(s)	13, 45, 471
BstDEI	CTNAG	2 cut(s)	209, 289
BstF5I	GGATG	3 cut(s)	15, 233, 949
BstKTI	GATC	5 cut(s)	169, 436, 559, 759, 915
BstMAI	GTCTC	1 cut(s)	757
BstMBI	GATC	5 cut(s)	166, 433, 556, 756, 912
BstMCI	CGRYCG	1 cut(s)	72
BstMWI	GCNNNNNNNGC	7 cut(s)	40, 77, 312, 726, 968, 980, 989
BstNI	CCWGG	2 cut(s)	239, 957
BstSCI	CCNGG	4 cut(s)	220, 237, 736, 955
BstSFI	CTRYAG	1 cut(s)	867
BstV1I	GCAGC	4 cut(s)	59, 67, 290, 958
BstV2I	GAAGAC	1 cut(s)	67
BstX2I	RGATCY	1 cut(s)	756
BstXI	CCANNNNNNTGG	1 cut(s)	519
BstYI	RGATCY	1 cut(s)	756
BstZI	CGGCCG	1 cut(s)	69
BsuRI	GGCC	3 cut(s)	5, 71, 720
BtrI	CACGTC	1 cut(s)	109
BtsCI	GGATG	3 cut(s)	15, 233, 949
BtsIMutI	CAGTG	4 cut(s)	162, 495, 817, 819
Cac8I	GCNNGC	3 cut(s)	13, 45, 471
Cfr10I	RCCGGY	3 cut(s)	5, 43, 631
Cfr13I	GGNCC	3 cut(s)	145, 524, 718
Csp6I	GTAC	4 cut(s)	453, 584, 608, 629
CspAI	ACCGGT	1 cut(s)	631
CviAII	CATG	4 cut(s)	24, 263, 660, 874
CviQI	GTAC	4 cut(s)	453, 584, 608, 629
DdeI	CTNAG	2 cut(s)	209, 289
DpnI	GATC	5 cut(s)	168, 435, 558, 758, 914
DpnII	GATC	5 cut(s)	166, 433, 556, 756, 912
EaeI	YGGCCR	2 cut(s)	3, 69
EagI	CGGCCG	1 cut(s)	69
Eam1104I	CTCTTC	2 cut(s)	282, 322
EarI	CTCTTC	2 cut(s)	282, 322
EclXI	CGGCCG	1 cut(s)	69
Eco24I	GRGCYC	1 cut(s)	985
Eco32I	GATATC	1 cut(s)	850
Eco47I	GGWCC	2 cut(s)	145, 524
Eco52I	CGGCCG	1 cut(s)	69
Eco57I	CTGAAG	1 cut(s)	303
EcoO109I	RGGNCCY	1 cut(s)	718
EcoRII	CCWGG	2 cut(s)	237, 955
EcoRV	GATATC	1 cut(s)	850
EcoT38I	GRGCYC	1 cut(s)	985
FaeI	CATG	4 cut(s)	27, 266, 663, 877
FalI	AAGNNNNNCTT	2 cut(s)	301, 333
FaqI	GGGAC	2 cut(s)	537, 950
FatI	CATG	4 cut(s)	23, 262, 659, 873
FauI	CCCGC	3 cut(s)	4, 63, 139
FauNDI	CATATG	2 cut(s)	553, 562
FbaI	TGATCA	1 cut(s)	433
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	4 cut(s)	48, 81, 304, 972
FokI	GGATG	3 cut(s)	2, 220, 956
FriOI	GRGCYC	1 cut(s)	985
Fsp4HI	GCNGC	4 cut(s)	48, 81, 304, 972
FspBI	CTAG	1 cut(s)	686
GluI	GCNGC	4 cut(s)	48, 81, 304, 972
GsaI	CCCAGC	1 cut(s)	621
GsuI	CTGGAG	1 cut(s)	564
HaeIII	GGCC	3 cut(s)	5, 71, 720
HapII	CCGG	6 cut(s)	6, 44, 68, 221, 632, 737
Hin1II	CATG	4 cut(s)	27, 266, 663, 877
HincII	GTYRAC	2 cut(s)	115, 244
HindII	GTYRAC	2 cut(s)	115, 244
HinfI	GANTC	2 cut(s)	388, 419
HpaII	CCGG	6 cut(s)	6, 44, 68, 221, 632, 737
HphI	GGTGA	3 cut(s)	95, 409, 470
Hpy166II	GTNNAC	5 cut(s)	115, 244, 443, 808, 826
Hpy188I	TCNGA	2 cut(s)	212, 639
Hpy188III	TCNNGA	2 cut(s)	173, 760
Hpy8I	GTNNAC	5 cut(s)	115, 244, 443, 808, 826
Hpy99I	CGWCG	2 cut(s)	113, 116
HpyAV	CCTTC	3 cut(s)	178, 606, 934
HpyCH4III	ACNGT	3 cut(s)	781, 812, 823
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	4 cut(s)	306, 367, 663, 974
HpyF10VI	GCNNNNNNNGC	7 cut(s)	40, 77, 312, 726, 968, 980, 989
HpyF3I	CTNAG	2 cut(s)	209, 289
HpySE526I	ACGT	1 cut(s)	108
Hsp92II	CATG	4 cut(s)	27, 266, 663, 877
KroI	GCCGGC	1 cut(s)	43
KroNI	GCCGGC	1 cut(s)	45
Ksp22I	TGATCA	1 cut(s)	433
Kzo9I	GATC	5 cut(s)	166, 433, 556, 756, 912
LguI	GCTCTTC	2 cut(s)	282, 322
LmnI	GCTCC	2 cut(s)	583, 980
Lsp1109I	GCAGC	4 cut(s)	59, 67, 290, 958
LweI	GCATC	3 cut(s)	24, 242, 302
MaeI	CTAG	1 cut(s)	686
MaeII	ACGT	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	458
MalI	GATC	5 cut(s)	168, 435, 558, 758, 914
MboI	GATC	5 cut(s)	166, 433, 556, 756, 912
MboII	GAAGA	9 cut(s)	67, 161, 188, 269, 309, 397, 719, 766, 812
MflI	RGATCY	1 cut(s)	756
MhlI	GDGCHC	1 cut(s)	985
MluCI	AATT	1 cut(s)	832
MroNI	GCCGGC	1 cut(s)	43
MseI	TTAA	3 cut(s)	699, 744, 933
MspI	CCGG	6 cut(s)	6, 44, 68, 221, 632, 737
MspR9I	CCNGG	4 cut(s)	222, 239, 738, 957
MvaI	CCWGG	2 cut(s)	239, 957
MwoI	GCNNNNNNNGC	7 cut(s)	40, 77, 312, 726, 968, 980, 989
NaeI	GCCGGC	1 cut(s)	45
NciI	CCSGG	2 cut(s)	222, 738
NdeI	CATATG	2 cut(s)	553, 562
NdeII	GATC	5 cut(s)	166, 433, 556, 756, 912
NgoMIV	GCCGGC	1 cut(s)	43
NlaIII	CATG	4 cut(s)	27, 266, 663, 877
NlaIV	GGNNCC	5 cut(s)	42, 525, 543, 719, 982
NmuCI	GTSAC	1 cut(s)	458
PciSI	GCTCTTC	2 cut(s)	282, 322
PdiI	GCCGGC	1 cut(s)	45
PfeI	GAWTC	2 cut(s)	388, 419
PinAI	ACCGGT	1 cut(s)	631
PkrI	GCNGC	4 cut(s)	49, 82, 305, 973
Psp6I	CCWGG	2 cut(s)	237, 955
PspFI	CCCAGC	1 cut(s)	617
PspGI	CCWGG	2 cut(s)	237, 955
PspN4I	GGNNCC	5 cut(s)	42, 525, 543, 719, 982
PspPI	GGNCC	3 cut(s)	145, 524, 718
PsuI	RGATCY	1 cut(s)	756
RsaI	GTAC	4 cut(s)	454, 585, 609, 630
RsaNI	GTAC	4 cut(s)	453, 584, 608, 629
SalI	GTCGAC	1 cut(s)	113
SapI	GCTCTTC	2 cut(s)	282, 322
SaqAI	TTAA	3 cut(s)	699, 744, 933
SatI	GCNGC	4 cut(s)	48, 81, 304, 972
Sau3AI	GATC	5 cut(s)	166, 433, 556, 756, 912
Sau96I	GGNCC	3 cut(s)	145, 524, 718
ScrFI	CCNGG	4 cut(s)	222, 239, 738, 957
SduI	GDGCHC	1 cut(s)	985
SfaNI	GCATC	3 cut(s)	24, 242, 302
SfcI	CTRYAG	1 cut(s)	867
SinI	GGWCC	2 cut(s)	145, 524
SmlI	CTYRAG	1 cut(s)	760
SmoI	CTYRAG	1 cut(s)	760
Sse9I	AATT	1 cut(s)	832
SsiI	CCGC	6 cut(s)	11, 56, 132, 148, 359, 509
SspMI	CTAG	1 cut(s)	686
StyD4I	CCNGG	4 cut(s)	220, 237, 736, 955
TaaI	ACNGT	3 cut(s)	781, 812, 823
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	3 cut(s)	114, 342, 353
TasI	AATT	1 cut(s)	832
TfiI	GAWTC	2 cut(s)	388, 419
Tru1I	TTAA	3 cut(s)	699, 744, 933
Tru9I	TTAA	3 cut(s)	699, 744, 933
TscAI	CASTG	4 cut(s)	169, 495, 817, 826
TseFI	GTSAC	1 cut(s)	458
TseI	GCWGC	4 cut(s)	47, 80, 303, 971
Tsp45I	GTSAC	1 cut(s)	458
TspDTI	ATGAA	5 cut(s)	148, 398, 488, 767, 778
TspRI	CASTG	4 cut(s)	169, 495, 817, 826
VpaK11BI	GGWCC	2 cut(s)	145, 524
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	1 cut(s)	686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.