Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038093.1

Orthogroup ID

OG0003051

Physical Location & Seq

Genomic Coordinates Forward (+)

125 .. 2635

Gene Structure 2511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038093.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

atggccggtgcgggaattcacccctaccatcagcaatgggcgccggcagccgctccgcctcctcctccggccgtcgtcgccgccgcccctccgcctccacctcaccacctcgtcgacaacccgaaccgacccgccaacgacgaggtccgcaccattttcatcaccggtcttcccgaagatgtgaaggagagggagatacagaacctcctccgatggctgccgggctacgaggcctcccaggtcaactacaaaggcgagaagcccatgagcttcgcgctcttcgccactgctcagcaagctatcgctgccaaagacgctcttcagagtatggttttcgatacggaatcgaaggcggtgttgcatacggagatggcaaagaagaatctttttgtgaaaagagggattgtaggggattcaaatgcttatgatcaaagtaaacgattgcgtactggtgactacacacaggctggttattccagtccggtgccttttcatccaccaccgccacctgtttggggaccacacgggtatatggctccaccacctcctccatatgatccatatggttatcctgttgctccagtaccaatgcccccttctgctcctgtaccagcacccagcagttatgtacctgttctgagacagaaggatacgcttccagagacaatcttcttgtggctgcctccggggttttcagtgcctcgccttggaatccctggagatgcgcctcaagaaagccttgggtatgcagctgtacatattagcgctaaacatgtagattgcacatctgaagaagttaattacttgaagttgtctgcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009790 GO:0009887 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0030510 GO:0030514 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035239 GO:0035295 GO:0042127 GO:0042802 GO:0042803 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0046983 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048660 GO:0048661 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051147 GO:0051148 GO:0051150 GO:0051151 GO:0051171 GO:0051252 GO:0055123 GO:0060255 GO:0065007 GO:0080090 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

273

Amino Acids

29.58

Weight (kDa)

6.3

Isoelectric Point (pI)

73.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21215 AT3G21215 AT3G21215 AT3G21215
fragaria_vesca	FvH4_3g14953 FvH4_3g16432 FvH4_4g15800 FvH4_4g32761 FvH4_5g34521 FvH4_6g16241 FvH4_6g37450 FvH4_6g45392 FvH4_7g15921 FvH4_7g31684
malus_domestica	MD09G1158000.v1.1 MD17G1144000.v1.1
prunus_persica	Prupe.3G168000_v2.0.a1
pyrus_communis	pycom09g07680 pycom17g13730
rosa_chinensis	RchiOBHm_Chr2g0150271 RchiOBHm_Chr2g0150291
rosa_laevigata	RLG00000020483
rosa_multiflora	Rmu_sc0001169.1_g000003 Rmu_sc0020705.1_g000001 Rmu_sc0024000.1_g000001 Rmu_sc0038093.1_g000001 Rmu_sc0040821.1_g000001 Rmu_ssc0000020.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097320 Rroxscaffold_2G00097330
rosa_rugosa	Rorug02G0420200 Rorug02G0420300
rosa_samantha	Rh2AG479200 Rh2BG491500 Rh2CG465400 Rh2DG500300
rosa_wichuraiana	Rw2G038980 Rw2G039110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	40, 484
AccBSI	CCGCTC	1 cut(s)	53
AccI	GTMKAC	1 cut(s)	114
AccII	CGCG	1 cut(s)	275
AclWI	GGATC	1 cut(s)	551
AcoI	YGGCCR	2 cut(s)	3, 69
AcsI	RAATTY	1 cut(s)	15
AcuI	CTGAAG	2 cut(s)	305, 810
AcyI	GRCGYC	1 cut(s)	41
AfaI	GTAC	5 cut(s)	448, 585, 609, 630, 756
AfeI	AGCGCT	1 cut(s)	766
AfiI	CCNNNNNNNGG	2 cut(s)	515, 707
AflIII	ACRYGT	1 cut(s)	772
AgeI	ACCGGT	1 cut(s)	164
AgsI	TTSAA	2 cut(s)	417, 808
AjnI	CCWGG	2 cut(s)	237, 715
AjuI	GAANNNNNNNTTGG	2 cut(s)	580, 612
AluBI	AGCT	3 cut(s)	270, 299, 752
AluI	AGCT	3 cut(s)	270, 299, 752
Alw26I	GTCTC	2 cut(s)	634, 656
AlwI	GGATC	1 cut(s)	551
Aor51HI	AGCGCT	1 cut(s)	766
AoxI	GGCC	3 cut(s)	3, 69, 231
ApeKI	GCWGC	5 cut(s)	47, 217, 305, 679, 749
ApoI	RAATTY	1 cut(s)	15
AsiGI	ACCGGT	1 cut(s)	164
AspLEI	GCGC	4 cut(s)	43, 277, 727, 767
AspS9I	GGNCC	2 cut(s)	145, 518
AsuC2I	CCSGG	2 cut(s)	222, 687
AsuHPI	GGTGA	4 cut(s)	11, 95, 154, 464
AvaII	GGWCC	2 cut(s)	145, 518
BanI	GGYRCC	2 cut(s)	40, 484
BbsI	GAAGAC	1 cut(s)	161
BbvI	GCAGC	5 cut(s)	59, 204, 292, 666, 761
BccI	CCATC	3 cut(s)	36, 207, 364
BceAI	ACGGC	1 cut(s)	56
BciT130I	CCWGG	2 cut(s)	239, 717
BciVI	GTATCC	1 cut(s)	643
BclI	TGATCA	1 cut(s)	427
BcnI	CCSGG	2 cut(s)	222, 687
BcoDI	GTCTC	2 cut(s)	634, 656
BfaI	CTAG	1 cut(s)	820
BfoI	RGCGCY	2 cut(s)	44, 768
BfuI	GTATCC	1 cut(s)	643
BisI	GCNGC	8 cut(s)	48, 51, 81, 84, 218, 306, 680, 750
BlpI	GCTNAGC	1 cut(s)	291
BlsI	GCNGC	8 cut(s)	49, 52, 82, 85, 219, 307, 681, 751
Bme1390I	CCNGG	4 cut(s)	222, 239, 687, 717
Bme18I	GGWCC	2 cut(s)	145, 518
BmgT120I	GGNCC	2 cut(s)	145, 518
BmiI	GGNNCC	4 cut(s)	42, 486, 519, 537
BmrFI	CCNGG	4 cut(s)	222, 239, 687, 717
BmsI	GCATC	1 cut(s)	712
BpiI	GAAGAC	1 cut(s)	161
BpmI	CTGGAG	2 cut(s)	564, 738
Bpu1102I	GCTNAGC	1 cut(s)	291
BpuEI	CTTGAG	1 cut(s)	714
BpuMI	CCSGG	2 cut(s)	222, 687
BsaHI	GRCGYC	1 cut(s)	41
BsaJI	CCNNGG	5 cut(s)	237, 686, 706, 715, 739
BsaWI	WCCGGW	2 cut(s)	164, 481
BsaXI	ACNNNNNCTCC	4 cut(s)	189, 218, 219, 248
Bsc4I	CCNNNNNNNGG	2 cut(s)	515, 707
Bse118I	RCCGGY	3 cut(s)	5, 43, 164
Bse1I	ACTGG	3 cut(s)	454, 477, 581
Bse3DI	GCAATG	1 cut(s)	41
BseBI	CCWGG	2 cut(s)	239, 717
BseDI	CCNNGG	5 cut(s)	237, 686, 706, 715, 739
BseGI	GGATG	1 cut(s)	493
BseLI	CCNNNNNNNGG	2 cut(s)	515, 707
BseMI	GCAATG	1 cut(s)	41
BseMII	CTCAG	2 cut(s)	305, 629
BseNI	ACTGG	3 cut(s)	454, 477, 581
BseRI	GAGGAG	4 cut(s)	51, 54, 197, 537
BseX3I	CGGCCG	1 cut(s)	69
BseXI	GCAGC	5 cut(s)	59, 204, 292, 666, 761
BseYI	CCCAGC	1 cut(s)	617
Bsh1236I	CGCG	1 cut(s)	275
Bsh1285I	CGRYCG	1 cut(s)	72
BshFI	GGCC	3 cut(s)	5, 71, 233
BshNI	GGYRCC	2 cut(s)	40, 484
BshTI	ACCGGT	1 cut(s)	164
BsiEI	CGRYCG	1 cut(s)	72
BsiSI	CCGG	7 cut(s)	6, 44, 68, 165, 221, 482, 686
BslFI	GGGAC	1 cut(s)	531
BslI	CCNNNNNNNGG	2 cut(s)	515, 707
BsmAI	GTCTC	2 cut(s)	634, 656
BsmFI	GGGAC	1 cut(s)	531
BsnI	GGCC	3 cut(s)	5, 71, 233
Bsp1407I	TGTACA	1 cut(s)	754
Bsp143I	GATC	2 cut(s)	427, 556
Bsp1720I	GCTNAGC	1 cut(s)	291
BspANI	GGCC	3 cut(s)	5, 71, 233
BspCNI	CTCAG	2 cut(s)	304, 630
BspFNI	CGCG	1 cut(s)	275
BspLI	GGNNCC	4 cut(s)	42, 486, 519, 537
BspPI	GGATC	1 cut(s)	551
BspQI	GCTCTTC	2 cut(s)	284, 324
BspT107I	GGYRCC	2 cut(s)	40, 484
BsrBI	CCGCTC	1 cut(s)	53
BsrDI	GCAATG	1 cut(s)	41
BsrFI	RCCGGY	3 cut(s)	5, 43, 164
BsrGI	TGTACA	1 cut(s)	754
BsrI	ACTGG	3 cut(s)	454, 477, 581
BssAI	RCCGGY	3 cut(s)	5, 43, 164
BssECI	CCNNGG	5 cut(s)	237, 686, 706, 715, 739
BssMI	GATC	2 cut(s)	427, 556
BssNI	GRCGYC	1 cut(s)	41
BssT1I	CCWWGG	2 cut(s)	706, 739
Bst2UI	CCWGG	2 cut(s)	239, 717
Bst6I	CTCTTC	2 cut(s)	284, 324
BstACI	GRCGYC	1 cut(s)	41
BstAUI	TGTACA	1 cut(s)	754
BstC8I	GCNNGC	2 cut(s)	45, 297
BstDEI	CTNAG	2 cut(s)	291, 638
BstF5I	GGATG	1 cut(s)	493
BstFNI	CGCG	1 cut(s)	275
BstH2I	RGCGCY	2 cut(s)	44, 768
BstHHI	GCGC	4 cut(s)	43, 277, 727, 767
BstKTI	GATC	2 cut(s)	430, 559
BstMAI	GTCTC	2 cut(s)	634, 656
BstMBI	GATC	2 cut(s)	427, 556
BstMCI	CGRYCG	1 cut(s)	72
BstMWI	GCNNNNNNNGC	7 cut(s)	40, 47, 77, 281, 296, 305, 314
BstNI	CCWGG	2 cut(s)	239, 717
BstNSI	RCATGY	1 cut(s)	776
BstSCI	CCNGG	4 cut(s)	220, 237, 685, 715
BstUI	CGCG	1 cut(s)	275
BstV1I	GCAGC	5 cut(s)	59, 204, 292, 666, 761
BstV2I	GAAGAC	1 cut(s)	161
BstXI	CCANNNNNNTGG	1 cut(s)	513
BstZI	CGGCCG	1 cut(s)	69
BsuI	GTATCC	1 cut(s)	643
BsuRI	GGCC	3 cut(s)	5, 71, 233
BtsCI	GGATG	1 cut(s)	493
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	2 cut(s)	285, 702
Cac8I	GCNNGC	2 cut(s)	45, 297
CfoI	GCGC	4 cut(s)	43, 277, 727, 767
Cfr10I	RCCGGY	3 cut(s)	5, 43, 164
Cfr13I	GGNCC	2 cut(s)	145, 518
CseI	GACGC	1 cut(s)	323
Csp6I	GTAC	5 cut(s)	447, 584, 608, 629, 755
CspAI	ACCGGT	1 cut(s)	164
CviAII	CATG	2 cut(s)	265, 773
CviQI	GTAC	5 cut(s)	447, 584, 608, 629, 755
DdeI	CTNAG	2 cut(s)	291, 638
DinI	GGCGCC	1 cut(s)	42
DpnI	GATC	2 cut(s)	429, 558
DpnII	GATC	2 cut(s)	427, 556
EaeI	YGGCCR	2 cut(s)	3, 69
EagI	CGGCCG	1 cut(s)	69
Eam1104I	CTCTTC	2 cut(s)	284, 324
EarI	CTCTTC	2 cut(s)	284, 324
EciI	GGCGGA	2 cut(s)	45, 81
EclXI	CGGCCG	1 cut(s)	69
Eco130I	CCWWGG	2 cut(s)	706, 739
Eco147I	AGGCCT	1 cut(s)	233
Eco47I	GGWCC	2 cut(s)	145, 518
Eco47III	AGCGCT	1 cut(s)	766
Eco52I	CGGCCG	1 cut(s)	69
Eco57I	CTGAAG	2 cut(s)	305, 810
EcoRI	GAATTC	1 cut(s)	15
EcoRII	CCWGG	2 cut(s)	237, 715
EcoT14I	CCWWGG	2 cut(s)	706, 739
EgeI	GGCGCC	1 cut(s)	42
EheI	GGCGCC	1 cut(s)	42
ErhI	CCWWGG	2 cut(s)	706, 739
FaeI	CATG	2 cut(s)	268, 776
FalI	AAGNNNNNCTT	4 cut(s)	303, 335, 723, 755
FaqI	GGGAC	1 cut(s)	531
FatI	CATG	2 cut(s)	264, 772
FauI	CCCGC	2 cut(s)	4, 139
FauNDI	CATATG	2 cut(s)	553, 562
FbaI	TGATCA	1 cut(s)	427
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	8 cut(s)	48, 51, 81, 84, 218, 306, 680, 750
FokI	GGATG	1 cut(s)	480
Fsp4HI	GCNGC	8 cut(s)	48, 51, 81, 84, 218, 306, 680, 750
FspBI	CTAG	1 cut(s)	820
GlaI	GCGC	4 cut(s)	42, 276, 726, 766
GluI	GCNGC	8 cut(s)	48, 51, 81, 84, 218, 306, 680, 750
GsaI	CCCAGC	1 cut(s)	621
GsuI	CTGGAG	2 cut(s)	564, 738
HaeII	RGCGCY	2 cut(s)	44, 768
HaeIII	GGCC	3 cut(s)	5, 71, 233
HapII	CCGG	7 cut(s)	6, 44, 68, 165, 221, 482, 686
HgaI	GACGC	1 cut(s)	323
HhaI	GCGC	4 cut(s)	43, 277, 727, 767
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	2 cut(s)	268, 776
Hin6I	GCGC	4 cut(s)	41, 275, 725, 765
HinP1I	GCGC	4 cut(s)	41, 275, 725, 765
HincII	GTYRAC	2 cut(s)	115, 244
HindII	GTYRAC	2 cut(s)	115, 244
HinfI	GANTC	4 cut(s)	344, 382, 413, 711
HpaII	CCGG	7 cut(s)	6, 44, 68, 165, 221, 482, 686
HphI	GGTGA	4 cut(s)	11, 95, 154, 464
Hpy166II	GTNNAC	3 cut(s)	115, 244, 437
Hpy188I	TCNGA	4 cut(s)	212, 324, 639, 790
Hpy188III	TCNNGA	3 cut(s)	173, 659, 731
Hpy8I	GTNNAC	3 cut(s)	115, 244, 437
Hpy99I	CGWCG	4 cut(s)	77, 80, 116, 143
HpyAV	CCTTC	4 cut(s)	178, 343, 606, 640
HpyCH4V	TGCA	3 cut(s)	361, 749, 783
HpyF10VI	GCNNNNNNNGC	7 cut(s)	40, 47, 77, 281, 296, 305, 314
HpyF3I	CTNAG	2 cut(s)	291, 638
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	2 cut(s)	268, 776
HspAI	GCGC	4 cut(s)	41, 275, 725, 765
KasI	GGCGCC	1 cut(s)	40
KroI	GCCGGC	1 cut(s)	43
KroNI	GCCGGC	1 cut(s)	45
Ksp22I	TGATCA	1 cut(s)	427
Kzo9I	GATC	2 cut(s)	427, 556
LguI	GCTCTTC	2 cut(s)	284, 324
LmnI	GCTCC	4 cut(s)	58, 541, 583, 607
Lsp1109I	GCAGC	5 cut(s)	59, 204, 292, 666, 761
LweI	GCATC	1 cut(s)	712
MaeI	CTAG	1 cut(s)	820
MaeIII	GTNAC	1 cut(s)	452
MalI	GATC	2 cut(s)	429, 558
MbiI	CCGCTC	1 cut(s)	53
MboI	GATC	2 cut(s)	427, 556
MboII	GAAGA	7 cut(s)	161, 188, 271, 311, 391, 661, 803
MluCI	AATT	2 cut(s)	15, 799
Mly113I	GGCGCC	1 cut(s)	41
MroNI	GCCGGC	1 cut(s)	43
MseI	TTAA	1 cut(s)	798
MspA1I	CMGCKG	1 cut(s)	752
MspI	CCGG	7 cut(s)	6, 44, 68, 165, 221, 482, 686
MspR9I	CCNGG	4 cut(s)	222, 239, 687, 717
MvaI	CCWGG	2 cut(s)	239, 717
MvnI	CGCG	1 cut(s)	275
MwoI	GCNNNNNNNGC	7 cut(s)	40, 47, 77, 281, 296, 305, 314
NaeI	GCCGGC	1 cut(s)	45
NarI	GGCGCC	1 cut(s)	41
NciI	CCSGG	2 cut(s)	222, 687
NdeI	CATATG	2 cut(s)	553, 562
NdeII	GATC	2 cut(s)	427, 556
NgoMIV	GCCGGC	1 cut(s)	43
NlaIII	CATG	2 cut(s)	268, 776
NlaIV	GGNNCC	4 cut(s)	42, 486, 519, 537
NmuCI	GTSAC	1 cut(s)	452
NspI	RCATGY	1 cut(s)	776
PceI	AGGCCT	1 cut(s)	233
PciI	ACATGT	1 cut(s)	772
PciSI	GCTCTTC	2 cut(s)	284, 324
PdiI	GCCGGC	1 cut(s)	45
PfeI	GAWTC	4 cut(s)	344, 382, 413, 711
PflFI	GACNNNGTC	1 cut(s)	143
PinAI	ACCGGT	1 cut(s)	164
PkrI	GCNGC	8 cut(s)	49, 52, 82, 85, 219, 307, 681, 751
PluTI	GGCGCC	1 cut(s)	44
PscI	ACATGT	1 cut(s)	772
Psp6I	CCWGG	2 cut(s)	237, 715
PspFI	CCCAGC	1 cut(s)	617
PspGI	CCWGG	2 cut(s)	237, 715
PspN4I	GGNNCC	4 cut(s)	42, 486, 519, 537
PspPI	GGNCC	2 cut(s)	145, 518
PsyI	GACNNNGTC	1 cut(s)	143
PvuII	CAGCTG	1 cut(s)	752
RsaI	GTAC	5 cut(s)	448, 585, 609, 630, 756
RsaNI	GTAC	5 cut(s)	447, 584, 608, 629, 755
SalI	GTCGAC	1 cut(s)	113
SapI	GCTCTTC	2 cut(s)	284, 324
SaqAI	TTAA	1 cut(s)	798
SatI	GCNGC	8 cut(s)	48, 51, 81, 84, 218, 306, 680, 750
Sau3AI	GATC	2 cut(s)	427, 556
Sau96I	GGNCC	2 cut(s)	145, 518
ScrFI	CCNGG	4 cut(s)	222, 239, 687, 717
SfaNI	GCATC	1 cut(s)	712
SfoI	GGCGCC	1 cut(s)	42
SinI	GGWCC	2 cut(s)	145, 518
SmlI	CTYRAG	1 cut(s)	729
SmoI	CTYRAG	1 cut(s)	729
Sse9I	AATT	2 cut(s)	15, 799
SseBI	AGGCCT	1 cut(s)	233
SspDI	GGCGCC	1 cut(s)	40
SspMI	CTAG	1 cut(s)	820
StuI	AGGCCT	1 cut(s)	233
StyD4I	CCNGG	4 cut(s)	220, 237, 685, 715
StyI	CCWWGG	2 cut(s)	706, 739
TaqI	TCGA	3 cut(s)	114, 336, 347
TasI	AATT	2 cut(s)	15, 799
TatI	WGTACW	1 cut(s)	754
TauI	GCSGC	3 cut(s)	53, 83, 86
TfiI	GAWTC	4 cut(s)	344, 382, 413, 711
Tru1I	TTAA	1 cut(s)	798
Tru9I	TTAA	1 cut(s)	798
TscAI	CASTG	2 cut(s)	292, 702
TseFI	GTSAC	1 cut(s)	452
TseI	GCWGC	5 cut(s)	47, 217, 305, 679, 749
Tsp45I	GTSAC	1 cut(s)	452
TspDTI	ATGAA	2 cut(s)	148, 482
TspGWI	ACGGA	2 cut(s)	356, 380
TspRI	CASTG	2 cut(s)	292, 702
Tth111I	GACNNNGTC	1 cut(s)	143
VpaK11BI	GGWCC	2 cut(s)	145, 518
XapI	RAATTY	1 cut(s)	15
XceI	RCATGY	1 cut(s)	776
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	1 cut(s)	820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.