Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003051

Physical Location & Seq

Genomic Coordinates Forward (+)

31285029 .. 31285531

Gene Structure 503 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g32761.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGCCGGCGCCAGCATCCACTCCTACCACCAGCAATGGGCCCCGACGGCAGCCCCTCCTCCTCCCCCGACCGTTGTCGCCGTCGCGCCTCCACCTCCTCCTCACCACCTCGTCGACAACCCCAACCGGCCTGCCAATGACAAGGTCTGCACCATCTTCATCACCGGTCTTCCCGAAGATGTCAAGGAGAGGGAGATACAGAACCTCCTAAGATGGCTTCCTAGCTACGAGGCCTTTCAGGTCAACTACAAAGGCGAGAAGCCGATGAGCTTCGTGCTCTTTGCCATTGCTCAGCAAGCTATTGCTGCCAAAGACGCTCTTCAGAGTATGGTTTTCGATACGAAATCGAAGGCGGTGTTGCATACGGAGATGGTGAAGAAGAATCTGTTTGTGAAAAGAGGTGAGAATGTTACGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009790 GO:0009887 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0030510 GO:0030514 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035239 GO:0035295 GO:0042127 GO:0042802 GO:0042803 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0046983 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048660 GO:0048661 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051147 GO:0051148 GO:0051150 GO:0051151 GO:0051171 GO:0051252 GO:0055123 GO:0060255 GO:0065007 GO:0080090 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

140

Amino Acids

15.46

Weight (kDa)

8.71

Isoelectric Point (pI)

51.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	52 - 115	2e-06	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21215 AT3G21215 AT3G21215 AT3G21215
fragaria_vesca	FvH4_3g14953 FvH4_3g16432 FvH4_4g15800 FvH4_4g32761 FvH4_5g34521 FvH4_6g16241 FvH4_6g37450 FvH4_6g45392 FvH4_7g15921 FvH4_7g31684
malus_domestica	MD09G1158000.v1.1 MD17G1144000.v1.1
prunus_persica	Prupe.3G168000_v2.0.a1
pyrus_communis	pycom09g07680 pycom17g13730
rosa_chinensis	RchiOBHm_Chr2g0150271 RchiOBHm_Chr2g0150291
rosa_laevigata	RLG00000020483
rosa_multiflora	Rmu_sc0001169.1_g000003 Rmu_sc0020705.1_g000001 Rmu_sc0024000.1_g000001 Rmu_sc0038093.1_g000001 Rmu_sc0040821.1_g000001 Rmu_ssc0000020.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097320 Rroxscaffold_2G00097330
rosa_rugosa	Rorug02G0420200 Rorug02G0420300
rosa_samantha	Rh2AG479200 Rh2BG491500 Rh2CG465400 Rh2DG500300
rosa_wichuraiana	Rw2G038980 Rw2G039110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	8
AccI	GTMKAC	1 cut(s)	114
AccII	CGCG	1 cut(s)	86
AciI	CCGC	1 cut(s)	353
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	305
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	1 cut(s)	416
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgeI	ACCGGT	1 cut(s)	164
AluBI	AGCT	3 cut(s)	225, 270, 299
AluI	AGCT	3 cut(s)	225, 270, 299
Alw21I	GWGCWC	1 cut(s)	279
AoxI	GGCC	4 cut(s)	3, 39, 128, 231
ApaI	GGGCCC	1 cut(s)	43
ApeKI	GCWGC	2 cut(s)	50, 305
AsiGI	ACCGGT	1 cut(s)	164
AspLEI	GCGC	2 cut(s)	11, 88
AspS9I	GGNCC	2 cut(s)	39, 40
AsuHPI	GGTGA	4 cut(s)	95, 154, 385, 413
BaeGI	GKGCMC	1 cut(s)	43
BanI	GGYRCC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	43
BbsI	GAAGAC	1 cut(s)	161
Bbv12I	GWGCWC	1 cut(s)	279
BbvI	GCAGC	2 cut(s)	62, 292
BccI	CCATC	3 cut(s)	161, 207, 364
BceAI	ACGGC	2 cut(s)	63, 65
BfaI	CTAG	1 cut(s)	222
BfoI	RGCGCY	1 cut(s)	12
BglI	GCCNNNNNGGC	1 cut(s)	47
BisI	GCNGC	2 cut(s)	51, 306
BlpI	GCTNAGC	1 cut(s)	291
BlsI	GCNGC	2 cut(s)	52, 307
BmgT120I	GGNCC	2 cut(s)	39, 40
BmiI	GGNNCC	3 cut(s)	10, 41, 42
BmsI	GCATC	1 cut(s)	24
BoxI	GACNNNNGTC	1 cut(s)	74
BpiI	GAAGAC	1 cut(s)	161
Bpu1102I	GCTNAGC	1 cut(s)	291
BsaAI	YACGTR	1 cut(s)	414
BsaHI	GRCGYC	1 cut(s)	9
BsaWI	WCCGGW	1 cut(s)	164
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse118I	RCCGGY	3 cut(s)	5, 126, 164
Bse3DI	GCAATG	2 cut(s)	41, 285
BseGI	GGATG	1 cut(s)	15
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMI	GCAATG	2 cut(s)	41, 285
BseMII	CTCAG	1 cut(s)	305
BseRI	GAGGAG	4 cut(s)	48, 51, 87, 90
BseSI	GKGCMC	1 cut(s)	43
BseXI	GCAGC	2 cut(s)	62, 292
BsgI	GTGCAG	1 cut(s)	133
Bsh1236I	CGCG	1 cut(s)	86
Bsh1285I	CGRYCG	1 cut(s)	72
BshFI	GGCC	4 cut(s)	5, 41, 130, 233
BshNI	GGYRCC	1 cut(s)	8
BshTI	ACCGGT	1 cut(s)	164
BsiEI	CGRYCG	1 cut(s)	72
BsiHKAI	GWGCWC	1 cut(s)	279
BsiSI	CCGG	3 cut(s)	6, 127, 165
BslI	CCNNNNNNNGG	1 cut(s)	37
BsnI	GGCC	4 cut(s)	5, 41, 130, 233
Bsp120I	GGGCCC	1 cut(s)	39
Bsp1286I	GDGCHC	2 cut(s)	43, 279
Bsp1720I	GCTNAGC	1 cut(s)	291
BspACI	CCGC	1 cut(s)	353
BspANI	GGCC	4 cut(s)	5, 41, 130, 233
BspCNI	CTCAG	1 cut(s)	304
BspFNI	CGCG	1 cut(s)	86
BspLI	GGNNCC	3 cut(s)	10, 41, 42
BspQI	GCTCTTC	1 cut(s)	324
BspT107I	GGYRCC	1 cut(s)	8
BsrDI	GCAATG	2 cut(s)	41, 285
BsrFI	RCCGGY	3 cut(s)	5, 126, 164
BssAI	RCCGGY	3 cut(s)	5, 126, 164
BssNI	GRCGYC	1 cut(s)	9
Bst4CI	ACNGT	1 cut(s)	73
Bst6I	CTCTTC	1 cut(s)	324
BstACI	GRCGYC	1 cut(s)	9
BstBAI	YACGTR	1 cut(s)	414
BstC8I	GCNNGC	4 cut(s)	7, 13, 132, 297
BstDEI	CTNAG	2 cut(s)	209, 291
BstF5I	GGATG	1 cut(s)	15
BstFNI	CGCG	1 cut(s)	86
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	2 cut(s)	11, 88
BstMCI	CGRYCG	1 cut(s)	72
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 296, 305, 314
BstPAI	GACNNNNGTC	1 cut(s)	74
BstSLI	GKGCMC	1 cut(s)	43
BstSNI	TACGTA	1 cut(s)	414
BstUI	CGCG	1 cut(s)	86
BstV1I	GCAGC	2 cut(s)	62, 292
BstV2I	GAAGAC	1 cut(s)	161
BsuRI	GGCC	4 cut(s)	5, 41, 130, 233
BtsCI	GGATG	1 cut(s)	15
Cac8I	GCNNGC	4 cut(s)	7, 13, 132, 297
CfoI	GCGC	2 cut(s)	11, 88
Cfr10I	RCCGGY	3 cut(s)	5, 126, 164
Cfr13I	GGNCC	2 cut(s)	39, 40
CseI	GACGC	1 cut(s)	323
Csp6I	GTAC	1 cut(s)	415
CspAI	ACCGGT	1 cut(s)	164
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	2 cut(s)	209, 291
DinI	GGCGCC	1 cut(s)	10
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Eco105I	TACGTA	1 cut(s)	414
Eco147I	AGGCCT	1 cut(s)	233
Eco24I	GRGCYC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	305
EcoO109I	RGGNCCY	1 cut(s)	40
EcoT38I	GRGCYC	1 cut(s)	43
EgeI	GGCGCC	1 cut(s)	10
EheI	GGCGCC	1 cut(s)	10
FaiI	YATR	2 cut(s)	329, 363
FalI	AAGNNNNNCTT	2 cut(s)	303, 335
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	2 cut(s)	51, 306
FokI	GGATG	1 cut(s)	2
FriOI	GRGCYC	1 cut(s)	43
Fsp4HI	GCNGC	2 cut(s)	51, 306
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	2 cut(s)	10, 87
GluI	GCNGC	2 cut(s)	51, 306
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	4 cut(s)	5, 41, 130, 233
HapII	CCGG	3 cut(s)	6, 127, 165
HgaI	GACGC	1 cut(s)	323
HhaI	GCGC	2 cut(s)	11, 88
Hin1I	GRCGYC	1 cut(s)	9
Hin6I	GCGC	2 cut(s)	9, 86
HinP1I	GCGC	2 cut(s)	9, 86
HincII	GTYRAC	2 cut(s)	115, 244
HindII	GTYRAC	2 cut(s)	115, 244
HinfI	GANTC	1 cut(s)	382
HpaII	CCGG	3 cut(s)	6, 127, 165
HphI	GGTGA	4 cut(s)	95, 154, 385, 413
Hpy166II	GTNNAC	2 cut(s)	115, 244
Hpy188I	TCNGA	1 cut(s)	324
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	2 cut(s)	115, 244
Hpy99I	CGWCG	3 cut(s)	49, 86, 116
HpyAV	CCTTC	1 cut(s)	343
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4IV	ACGT	1 cut(s)	413
HpyCH4V	TGCA	2 cut(s)	150, 361
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 296, 305, 314
HpyF3I	CTNAG	2 cut(s)	209, 291
HpySE526I	ACGT	1 cut(s)	413
Hsp92I	GRCGYC	1 cut(s)	9
HspAI	GCGC	2 cut(s)	9, 86
KasI	GGCGCC	1 cut(s)	8
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
LguI	GCTCTTC	1 cut(s)	324
LpnPI	CCDG	7 cut(s)	19, 25, 44, 140, 144, 178, 224
Lsp1109I	GCAGC	2 cut(s)	62, 292
LweI	GCATC	1 cut(s)	24
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	1 cut(s)	413
MaeIII	GTNAC	1 cut(s)	409
MboII	GAAGA	6 cut(s)	148, 161, 188, 311, 388, 391
MhlI	GDGCHC	2 cut(s)	43, 279
Mly113I	GGCGCC	1 cut(s)	9
MroNI	GCCGGC	1 cut(s)	5
MspI	CCGG	3 cut(s)	6, 127, 165
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	4 cut(s)	47, 296, 305, 314
NaeI	GCCGGC	1 cut(s)	7
NarI	GGCGCC	1 cut(s)	9
NgoMIV	GCCGGC	1 cut(s)	5
NlaIV	GGNNCC	3 cut(s)	10, 41, 42
PceI	AGGCCT	1 cut(s)	233
PciSI	GCTCTTC	1 cut(s)	324
PdiI	GCCGGC	1 cut(s)	7
PfeI	GAWTC	1 cut(s)	382
PflFI	GACNNNGTC	1 cut(s)	143
PinAI	ACCGGT	1 cut(s)	164
PkrI	GCNGC	2 cut(s)	52, 307
PluTI	GGCGCC	1 cut(s)	12
Ppu21I	YACGTR	1 cut(s)	414
PshAI	GACNNNNGTC	1 cut(s)	74
PspN4I	GGNNCC	3 cut(s)	10, 41, 42
PspOMI	GGGCCC	1 cut(s)	39
PspPI	GGNCC	2 cut(s)	39, 40
PsyI	GACNNNGTC	1 cut(s)	143
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
SalI	GTCGAC	1 cut(s)	113
SapI	GCTCTTC	1 cut(s)	324
SatI	GCNGC	2 cut(s)	51, 306
Sau96I	GGNCC	2 cut(s)	39, 40
SduI	GDGCHC	2 cut(s)	43, 279
SfaNI	GCATC	1 cut(s)	24
SfoI	GGCGCC	1 cut(s)	10
SnaBI	TACGTA	1 cut(s)	414
SseBI	AGGCCT	1 cut(s)	233
SsiI	CCGC	1 cut(s)	353
SspDI	GGCGCC	1 cut(s)	8
SspMI	CTAG	1 cut(s)	222
StuI	AGGCCT	1 cut(s)	233
TaaI	ACNGT	1 cut(s)	73
TaiI	ACGT	1 cut(s)	416
TaqI	TCGA	3 cut(s)	114, 336, 347
TfiI	GAWTC	1 cut(s)	382
TseI	GCWGC	2 cut(s)	50, 305
TspDTI	ATGAA	1 cut(s)	148
TspGWI	ACGGA	1 cut(s)	380
Tth111I	GACNNNGTC	1 cut(s)	143
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.