Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003051

Physical Location & Seq

Genomic Coordinates Reverse (-)

25205131 .. 25207218

Gene Structure 2088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g34521.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGCCGGCGCCGGCATCCACCCCTACCACCAGCATAGGGCCCCGGCGGCAGCCCCTCCTCCTCCCCCGGCCGTCGTCGCTGCCATTCTTAACTCTGAGAGGGAACGGAACAAGAGAATCCATGGCGGGGCTCTGTGTACTATGCAAAGTTTGGTTGAGAAAGTGGTTTCTTGGTGGGAAGTGTTTGAACAGTCGCATACTTTGAAAAATGAAGGTGCTATTAAGGTTGCAAATGAGGAGCTTTCAGAGAGAACTGTTGATATGGCGGGTCCGCAATACATGTCTGTAATGTTCTCTCCTCCTATTGAAGAGATGGATGATCCGATACAGAGTGAAGAGTATTTCCCTTTGATGCTTCCCGGTCTTAAAAGAGTAGATATGATCGGTTCTTGCAAAGAATTTATCTGCATTCAAGTTGATCTTACTGCTTCGGTTGGGGATGAGAGTTTCATAATTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

16.92

Weight (kDa)

4.94

Isoelectric Point (pI)

64.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21215 AT3G21215 AT3G21215 AT3G21215
fragaria_vesca	FvH4_3g14953 FvH4_3g16432 FvH4_4g15800 FvH4_4g32761 FvH4_5g34521 FvH4_6g16241 FvH4_6g37450 FvH4_6g45392 FvH4_7g15921 FvH4_7g31684
malus_domestica	MD09G1158000.v1.1 MD17G1144000.v1.1
prunus_persica	Prupe.3G168000_v2.0.a1
pyrus_communis	pycom09g07680 pycom17g13730
rosa_chinensis	RchiOBHm_Chr2g0150271 RchiOBHm_Chr2g0150291
rosa_laevigata	RLG00000020483
rosa_multiflora	Rmu_sc0001169.1_g000003 Rmu_sc0020705.1_g000001 Rmu_sc0024000.1_g000001 Rmu_sc0038093.1_g000001 Rmu_sc0040821.1_g000001 Rmu_ssc0000020.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097320 Rroxscaffold_2G00097330
rosa_rugosa	Rorug02G0420200 Rorug02G0420300
rosa_samantha	Rh2AG479200 Rh2BG491500 Rh2CG465400 Rh2DG500300
rosa_wichuraiana	Rw2G038980 Rw2G039110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	8
AciI	CCGC	4 cut(s)	47, 126, 266, 272
AclWI	GGATC	1 cut(s)	314
AcoI	YGGCCR	2 cut(s)	3, 69
AcsI	RAATTY	1 cut(s)	398
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	1 cut(s)	139
AfiI	CCNNNNNNNGG	2 cut(s)	37, 127
AflIII	ACRYGT	1 cut(s)	279
AgsI	TTSAA	4 cut(s)	188, 205, 308, 413
AluBI	AGCT	1 cut(s)	241
AluI	AGCT	1 cut(s)	241
AlwI	GGATC	1 cut(s)	314
AoxI	GGCC	3 cut(s)	3, 39, 69
ApaI	GGGCCC	1 cut(s)	43
ApeKI	GCWGC	2 cut(s)	50, 80
ApoI	RAATTY	1 cut(s)	398
AspLEI	GCGC	1 cut(s)	11
AspS9I	GGNCC	3 cut(s)	39, 40, 269
AsuC2I	CCSGG	3 cut(s)	44, 68, 360
AvaII	GGWCC	1 cut(s)	269
BaeGI	GKGCMC	1 cut(s)	43
BanI	GGYRCC	1 cut(s)	8
BanII	GRGCYC	2 cut(s)	43, 133
BbvI	GCAGC	2 cut(s)	62, 67
BccI	CCATC	1 cut(s)	307
BceAI	ACGGC	1 cut(s)	56
BcnI	CCSGG	3 cut(s)	44, 68, 360
BfoI	RGCGCY	1 cut(s)	12
BglI	GCCNNNNNGGC	1 cut(s)	47
BisI	GCNGC	3 cut(s)	48, 51, 81
BlsI	GCNGC	3 cut(s)	49, 52, 82
Bme1390I	CCNGG	3 cut(s)	44, 68, 360
Bme18I	GGWCC	1 cut(s)	269
BmgT120I	GGNCC	3 cut(s)	39, 40, 269
BmiI	GGNNCC	4 cut(s)	10, 41, 42, 270
BmrFI	CCNGG	3 cut(s)	44, 68, 360
BmsI	GCATC	2 cut(s)	24, 342
BpuMI	CCSGG	3 cut(s)	44, 68, 360
BsaHI	GRCGYC	1 cut(s)	9
BsaJI	CCNNGG	3 cut(s)	42, 66, 121
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 127
Bse118I	RCCGGY	2 cut(s)	5, 11
BseDI	CCNNGG	3 cut(s)	42, 66, 121
BseGI	GGATG	3 cut(s)	15, 322, 445
BseLI	CCNNNNNNNGG	2 cut(s)	37, 127
BseMII	CTCAG	1 cut(s)	87
BseRI	GAGGAG	4 cut(s)	48, 51, 251, 288
BseSI	GKGCMC	1 cut(s)	43
BseX3I	CGGCCG	1 cut(s)	69
BseXI	GCAGC	2 cut(s)	62, 67
Bsh1285I	CGRYCG	1 cut(s)	72
BshFI	GGCC	3 cut(s)	5, 41, 71
BshNI	GGYRCC	1 cut(s)	8
BsiEI	CGRYCG	1 cut(s)	72
BsiSI	CCGG	5 cut(s)	6, 12, 44, 68, 360
BslI	CCNNNNNNNGG	2 cut(s)	37, 127
BsmI	GAATGC	1 cut(s)	408
BsnI	GGCC	3 cut(s)	5, 41, 71
Bsp120I	GGGCCC	1 cut(s)	39
Bsp1286I	GDGCHC	2 cut(s)	43, 133
Bsp143I	GATC	3 cut(s)	319, 381, 418
Bsp19I	CCATGG	1 cut(s)	121
BspACI	CCGC	4 cut(s)	47, 126, 266, 272
BspANI	GGCC	3 cut(s)	5, 41, 71
BspCNI	CTCAG	1 cut(s)	88
BspLI	GGNNCC	4 cut(s)	10, 41, 42, 270
BspPI	GGATC	1 cut(s)	314
BspT107I	GGYRCC	1 cut(s)	8
BsrFI	RCCGGY	2 cut(s)	5, 11
BssAI	RCCGGY	2 cut(s)	5, 11
BssECI	CCNNGG	3 cut(s)	42, 66, 121
BssMI	GATC	3 cut(s)	319, 381, 418
BssNI	GRCGYC	1 cut(s)	9
BssT1I	CCWWGG	1 cut(s)	121
Bst4CI	ACNGT	2 cut(s)	192, 256
Bst6I	CTCTTC	2 cut(s)	303, 330
BstACI	GRCGYC	1 cut(s)	9
BstC8I	GCNNGC	2 cut(s)	7, 13
BstDEI	CTNAG	1 cut(s)	96
BstDSI	CCRYGG	1 cut(s)	121
BstF5I	GGATG	3 cut(s)	15, 322, 445
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	3 cut(s)	322, 384, 421
BstMBI	GATC	3 cut(s)	319, 381, 418
BstMCI	CGRYCG	1 cut(s)	72
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 77
BstNSI	RCATGY	1 cut(s)	283
BstSCI	CCNGG	3 cut(s)	42, 66, 358
BstSLI	GKGCMC	1 cut(s)	43
BstV1I	GCAGC	2 cut(s)	62, 67
BstZI	CGGCCG	1 cut(s)	69
BsuRI	GGCC	3 cut(s)	5, 41, 71
BtgI	CCRYGG	1 cut(s)	121
BtsCI	GGATG	3 cut(s)	15, 322, 445
Cac8I	GCNNGC	2 cut(s)	7, 13
CfoI	GCGC	1 cut(s)	11
Cfr10I	RCCGGY	2 cut(s)	5, 11
Cfr13I	GGNCC	3 cut(s)	39, 40, 269
Csp6I	GTAC	1 cut(s)	138
CviAII	CATG	2 cut(s)	122, 280
CviJI	RGCY	6 cut(s)	5, 41, 53, 71, 131, 241
CviKI_1	RGCY	6 cut(s)	5, 41, 53, 71, 131, 241
CviQI	GTAC	1 cut(s)	138
DdeI	CTNAG	1 cut(s)	96
DinI	GGCGCC	1 cut(s)	10
DpnI	GATC	3 cut(s)	321, 383, 420
DpnII	GATC	3 cut(s)	319, 381, 418
EaeI	YGGCCR	2 cut(s)	3, 69
EagI	CGGCCG	1 cut(s)	69
Eam1104I	CTCTTC	2 cut(s)	303, 330
EarI	CTCTTC	2 cut(s)	303, 330
EclXI	CGGCCG	1 cut(s)	69
Eco130I	CCWWGG	1 cut(s)	121
Eco24I	GRGCYC	2 cut(s)	43, 133
Eco47I	GGWCC	1 cut(s)	269
Eco52I	CGGCCG	1 cut(s)	69
EcoO109I	RGGNCCY	2 cut(s)	39, 40
EcoT14I	CCWWGG	1 cut(s)	121
EcoT38I	GRGCYC	2 cut(s)	43, 133
EgeI	GGCGCC	1 cut(s)	10
EheI	GGCGCC	1 cut(s)	10
ErhI	CCWWGG	1 cut(s)	121
FaeI	CATG	2 cut(s)	125, 283
FaiI	YATR	8 cut(s)	36, 123, 143, 198, 263, 281, 380, 452
FalI	AAGNNNNNCTT	2 cut(s)	405, 437
FatI	CATG	2 cut(s)	121, 279
FauI	CCCGC	2 cut(s)	119, 259
Fnu4HI	GCNGC	3 cut(s)	48, 51, 81
FokI	GGATG	3 cut(s)	2, 329, 452
FriOI	GRGCYC	2 cut(s)	43, 133
Fsp4HI	GCNGC	3 cut(s)	48, 51, 81
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	3 cut(s)	48, 51, 81
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	3 cut(s)	5, 41, 71
HapII	CCGG	5 cut(s)	6, 12, 44, 68, 360
HhaI	GCGC	1 cut(s)	11
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	2 cut(s)	125, 283
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HinfI	GANTC	1 cut(s)	117
HpaII	CCGG	5 cut(s)	6, 12, 44, 68, 360
Hpy166II	GTNNAC	1 cut(s)	138
Hpy188I	TCNGA	3 cut(s)	97, 247, 324
Hpy8I	GTNNAC	1 cut(s)	138
Hpy99I	CGWCG	2 cut(s)	77, 80
HpyAV	CCTTC	1 cut(s)	206
HpyCH4III	ACNGT	2 cut(s)	192, 256
HpyCH4V	TGCA	4 cut(s)	145, 230, 393, 408
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 77
HpyF3I	CTNAG	1 cut(s)	96
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	2 cut(s)	125, 283
HspAI	GCGC	1 cut(s)	9
KasI	GGCGCC	1 cut(s)	8
KroI	GCCGGC	2 cut(s)	5, 11
KroNI	GCCGGC	2 cut(s)	7, 13
Kzo9I	GATC	3 cut(s)	319, 381, 418
LmnI	GCTCC	1 cut(s)	238
LpnPI	CCDG	6 cut(s)	19, 25, 44, 57, 81, 373
Lsp1109I	GCAGC	2 cut(s)	62, 67
LweI	GCATC	2 cut(s)	24, 342
MalI	GATC	3 cut(s)	321, 383, 420
MboI	GATC	3 cut(s)	319, 381, 418
MboII	GAAGA	2 cut(s)	320, 347
MhlI	GDGCHC	2 cut(s)	43, 133
MluCI	AATT	2 cut(s)	398, 453
Mly113I	GGCGCC	1 cut(s)	9
MnlI	CCTC	6 cut(s)	66, 69, 72, 93, 229, 309
MroNI	GCCGGC	2 cut(s)	5, 11
MseI	TTAA	3 cut(s)	90, 222, 366
MspI	CCGG	5 cut(s)	6, 12, 44, 68, 360
MspR9I	CCNGG	3 cut(s)	44, 68, 360
Mva1269I	GAATGC	1 cut(s)	408
MwoI	GCNNNNNNNGC	2 cut(s)	47, 77
NaeI	GCCGGC	2 cut(s)	7, 13
NarI	GGCGCC	1 cut(s)	9
NciI	CCSGG	3 cut(s)	44, 68, 360
NcoI	CCATGG	1 cut(s)	121
NdeII	GATC	3 cut(s)	319, 381, 418
NgoMIV	GCCGGC	2 cut(s)	5, 11
NlaIII	CATG	2 cut(s)	125, 283
NlaIV	GGNNCC	4 cut(s)	10, 41, 42, 270
NspI	RCATGY	1 cut(s)	283
PciI	ACATGT	1 cut(s)	279
PctI	GAATGC	1 cut(s)	408
PdiI	GCCGGC	2 cut(s)	7, 13
PfeI	GAWTC	1 cut(s)	117
PkrI	GCNGC	3 cut(s)	49, 52, 82
PluTI	GGCGCC	1 cut(s)	12
PscI	ACATGT	1 cut(s)	279
PspN4I	GGNNCC	4 cut(s)	10, 41, 42, 270
PspOMI	GGGCCC	1 cut(s)	39
PspPI	GGNCC	3 cut(s)	39, 40, 269
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
SaqAI	TTAA	3 cut(s)	90, 222, 366
SatI	GCNGC	3 cut(s)	48, 51, 81
Sau3AI	GATC	3 cut(s)	319, 381, 418
Sau96I	GGNCC	3 cut(s)	39, 40, 269
ScrFI	CCNGG	3 cut(s)	44, 68, 360
SduI	GDGCHC	2 cut(s)	43, 133
SetI	ASST	3 cut(s)	217, 228, 243
SfaNI	GCATC	2 cut(s)	24, 342
SfoI	GGCGCC	1 cut(s)	10
SinI	GGWCC	1 cut(s)	269
Sse9I	AATT	2 cut(s)	398, 453
SsiI	CCGC	4 cut(s)	47, 126, 266, 272
SspDI	GGCGCC	1 cut(s)	8
StyD4I	CCNGG	3 cut(s)	42, 66, 358
StyI	CCWWGG	1 cut(s)	121
TaaI	ACNGT	2 cut(s)	192, 256
TasI	AATT	2 cut(s)	398, 453
TatI	WGTACW	1 cut(s)	137
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	1 cut(s)	117
Tru1I	TTAA	3 cut(s)	90, 222, 366
Tru9I	TTAA	3 cut(s)	90, 222, 366
TseI	GCWGC	2 cut(s)	50, 80
TspDTI	ATGAA	2 cut(s)	225, 439
TspGWI	ACGGA	1 cut(s)	121
VpaK11BI	GGWCC	1 cut(s)	269
XapI	RAATTY	1 cut(s)	398
XceI	RCATGY	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.