Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001169.1

Orthogroup ID

OG0003051

Physical Location & Seq

Genomic Coordinates Reverse (-)

21977 .. 24510

Gene Structure 2534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001169.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

atggccggtgcgggcatccacccatgccaccagcaatgggtgccggcagcctccccgcctcctcctccggccgtcttcgctgccacccctcctcctccccctcaccacgtcgtcgacaacccgaaccgacccgccaacaacgaggtccgcaccattttcatcactgatcttcccgaagatgtgaaggagagggagatacagaacctcctcagatggttgccgggctacgaggcatcccaggtcaactacaaaggagaagcccatgagcttcacgctcttcgcctctgctcagcaagctattgctgcaaaagatgctcttcagagtatggttttcgatacacaatcgagggcggtgttgcatacagagatggtaatgaagaatcttttgggattgtaggggattcaaatgcttatgatcaaagtaaacgattgcgtactggtgactacacgcaggctggttattccagtccagtgccttttcatccgccaccgccacctgtttggggaccacacaagtatatggcacctcctccatatgatccatatggttatcctgttgctccagtaccaatgcccccttctgttcctgtaccagcacccagcagttatgtaccggttctgacacagaaggatacgcttccagagacaaaacttcttgtagctgcctcgggggttttcagccgcctcgccttggaatccctggaggtgcgcctcaagaaagcctttgcaagcattatagaaagcctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009790 GO:0009887 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0030510 GO:0030514 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035239 GO:0035295 GO:0042127 GO:0042802 GO:0042803 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0046983 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048660 GO:0048661 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051147 GO:0051148 GO:0051150 GO:0051151 GO:0051171 GO:0051252 GO:0055123 GO:0060255 GO:0065007 GO:0080090 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

249

Amino Acids

27.26

Weight (kDa)

6.24

Isoelectric Point (pI)

69.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21215 AT3G21215 AT3G21215 AT3G21215
fragaria_vesca	FvH4_3g14953 FvH4_3g16432 FvH4_4g15800 FvH4_4g32761 FvH4_5g34521 FvH4_6g16241 FvH4_6g37450 FvH4_6g45392 FvH4_7g15921 FvH4_7g31684
malus_domestica	MD09G1158000.v1.1 MD17G1144000.v1.1
prunus_persica	Prupe.3G168000_v2.0.a1
pyrus_communis	pycom09g07680 pycom17g13730
rosa_chinensis	RchiOBHm_Chr2g0150271 RchiOBHm_Chr2g0150291
rosa_laevigata	RLG00000020483
rosa_multiflora	Rmu_sc0001169.1_g000003 Rmu_sc0020705.1_g000001 Rmu_sc0024000.1_g000001 Rmu_sc0038093.1_g000001 Rmu_sc0040821.1_g000001 Rmu_ssc0000020.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097320 Rroxscaffold_2G00097330
rosa_rugosa	Rorug02G0420200 Rorug02G0420300
rosa_samantha	Rh2AG479200 Rh2BG491500 Rh2CG465400 Rh2DG500300
rosa_wichuraiana	Rw2G038980 Rw2G039110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	40, 523
AccI	GTMKAC	1 cut(s)	114
AciI	CCGC	8 cut(s)	11, 56, 132, 148, 351, 485, 491, 682
AclWI	GGATC	1 cut(s)	533
AcoI	YGGCCR	2 cut(s)	3, 69
AcuI	CTGAAG	1 cut(s)	303
AfaI	GTAC	4 cut(s)	436, 567, 591, 612
AfiI	CCNNNNNNNGG	3 cut(s)	37, 503, 691
AgeI	ACCGGT	1 cut(s)	613
AgsI	TTSAA	1 cut(s)	405
AjiI	CACGTC	1 cut(s)	109
AjnI	CCWGG	2 cut(s)	237, 699
AjuI	GAANNNNNNNTTGG	4 cut(s)	369, 401, 562, 594
AluBI	AGCT	3 cut(s)	268, 297, 662
AluI	AGCT	3 cut(s)	268, 297, 662
Alw26I	GTCTC	1 cut(s)	638
AlwI	GGATC	1 cut(s)	533
Ama87I	CYCGRG	1 cut(s)	667
AoxI	GGCC	2 cut(s)	3, 69
ApeKI	GCWGC	4 cut(s)	47, 80, 303, 662
AsiGI	ACCGGT	1 cut(s)	613
AspLEI	GCGC	1 cut(s)	711
AspS9I	GGNCC	2 cut(s)	145, 506
AsuC2I	CCSGG	1 cut(s)	222
AsuHPI	GGTGA	2 cut(s)	95, 452
AvaI	CYCGRG	1 cut(s)	667
AvaII	GGWCC	2 cut(s)	145, 506
BanI	GGYRCC	2 cut(s)	40, 523
BbsI	GAAGAC	1 cut(s)	67
BbvI	GCAGC	4 cut(s)	59, 67, 290, 649
BccI	CCATC	2 cut(s)	207, 362
BceAI	ACGGC	1 cut(s)	56
BciT130I	CCWGG	2 cut(s)	239, 701
BciVI	GTATCC	1 cut(s)	625
BclI	TGATCA	1 cut(s)	415
BcnI	CCSGG	1 cut(s)	222
BcoDI	GTCTC	1 cut(s)	638
BfuI	GTATCC	1 cut(s)	625
BisI	GCNGC	5 cut(s)	48, 81, 304, 663, 682
BlpI	GCTNAGC	1 cut(s)	289
BlsI	GCNGC	5 cut(s)	49, 82, 305, 664, 683
Bme1390I	CCNGG	3 cut(s)	222, 239, 701
Bme18I	GGWCC	2 cut(s)	145, 506
BmeT110I	CYCGRG	1 cut(s)	667
BmgBI	CACGTC	1 cut(s)	109
BmgT120I	GGNCC	2 cut(s)	145, 506
BmiI	GGNNCC	3 cut(s)	42, 507, 525
BmrFI	CCNGG	3 cut(s)	222, 239, 701
BmsI	GCATC	3 cut(s)	24, 242, 302
BpiI	GAAGAC	1 cut(s)	67
BpmI	CTGGAG	2 cut(s)	546, 722
Bpu1102I	GCTNAGC	1 cut(s)	289
BpuEI	CTTGAG	1 cut(s)	698
BpuMI	CCSGG	1 cut(s)	222
BsaJI	CCNNGG	4 cut(s)	237, 666, 690, 699
BsaWI	WCCGGW	1 cut(s)	613
BsaXI	ACNNNNNCTCC	4 cut(s)	76, 106, 189, 219
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 503, 691
Bse118I	RCCGGY	3 cut(s)	5, 43, 613
Bse1I	ACTGG	4 cut(s)	442, 465, 470, 563
Bse3DI	GCAATG	1 cut(s)	41
BseBI	CCWGG	2 cut(s)	239, 701
BseDI	CCNNGG	4 cut(s)	237, 666, 690, 699
BseGI	GGATG	3 cut(s)	15, 233, 481
BseLI	CCNNNNNNNGG	3 cut(s)	37, 503, 691
BseMI	GCAATG	1 cut(s)	41
BseMII	CTCAG	2 cut(s)	223, 303
BseNI	ACTGG	4 cut(s)	442, 465, 470, 563
BseRI	GAGGAG	6 cut(s)	51, 54, 81, 84, 197, 519
BseX3I	CGGCCG	1 cut(s)	69
BseXI	GCAGC	4 cut(s)	59, 67, 290, 649
BseYI	CCCAGC	1 cut(s)	599
Bsh1285I	CGRYCG	1 cut(s)	72
BshFI	GGCC	2 cut(s)	5, 71
BshNI	GGYRCC	2 cut(s)	40, 523
BshTI	ACCGGT	1 cut(s)	613
BsiEI	CGRYCG	1 cut(s)	72
BsiHKCI	CYCGRG	1 cut(s)	667
BsiSI	CCGG	5 cut(s)	6, 44, 68, 221, 614
BslFI	GGGAC	1 cut(s)	519
BslI	CCNNNNNNNGG	3 cut(s)	37, 503, 691
BsmAI	GTCTC	1 cut(s)	638
BsmFI	GGGAC	1 cut(s)	519
BsnI	GGCC	2 cut(s)	5, 71
BsoBI	CYCGRG	1 cut(s)	667
Bsp143I	GATC	3 cut(s)	166, 415, 538
Bsp1720I	GCTNAGC	1 cut(s)	289
BspACI	CCGC	8 cut(s)	11, 56, 132, 148, 351, 485, 491, 682
BspANI	GGCC	2 cut(s)	5, 71
BspCNI	CTCAG	2 cut(s)	222, 302
BspLI	GGNNCC	3 cut(s)	42, 507, 525
BspPI	GGATC	1 cut(s)	533
BspQI	GCTCTTC	2 cut(s)	282, 322
BspT107I	GGYRCC	2 cut(s)	40, 523
BsrDI	GCAATG	1 cut(s)	41
BsrFI	RCCGGY	3 cut(s)	5, 43, 613
BsrI	ACTGG	4 cut(s)	442, 465, 470, 563
BssAI	RCCGGY	3 cut(s)	5, 43, 613
BssECI	CCNNGG	4 cut(s)	237, 666, 690, 699
BssMI	GATC	3 cut(s)	166, 415, 538
BssT1I	CCWWGG	1 cut(s)	690
Bst2UI	CCWGG	2 cut(s)	239, 701
Bst6I	CTCTTC	2 cut(s)	282, 322
BstAPI	GCANNNNNTGC	2 cut(s)	40, 312
BstC8I	GCNNGC	5 cut(s)	13, 45, 295, 453, 730
BstDEI	CTNAG	2 cut(s)	209, 289
BstF5I	GGATG	3 cut(s)	15, 233, 481
BstHHI	GCGC	1 cut(s)	711
BstKTI	GATC	3 cut(s)	169, 418, 541
BstMAI	GTCTC	1 cut(s)	638
BstMBI	GATC	3 cut(s)	166, 415, 538
BstMCI	CGRYCG	1 cut(s)	72
BstMWI	GCNNNNNNNGC	5 cut(s)	40, 77, 294, 303, 312
BstNI	CCWGG	2 cut(s)	239, 701
BstSCI	CCNGG	3 cut(s)	220, 237, 699
BstV1I	GCAGC	4 cut(s)	59, 67, 290, 649
BstV2I	GAAGAC	1 cut(s)	67
BstXI	CCANNNNNNTGG	1 cut(s)	501
BstZI	CGGCCG	1 cut(s)	69
BsuI	GTATCC	1 cut(s)	625
BsuRI	GGCC	2 cut(s)	5, 71
BtrI	CACGTC	1 cut(s)	109
BtsCI	GGATG	3 cut(s)	15, 233, 481
BtsIMutI	CAGTG	2 cut(s)	162, 477
Cac8I	GCNNGC	5 cut(s)	13, 45, 295, 453, 730
CfoI	GCGC	1 cut(s)	711
Cfr10I	RCCGGY	3 cut(s)	5, 43, 613
Cfr13I	GGNCC	2 cut(s)	145, 506
Csp6I	GTAC	4 cut(s)	435, 566, 590, 611
CspAI	ACCGGT	1 cut(s)	613
CviAII	CATG	2 cut(s)	24, 263
CviQI	GTAC	4 cut(s)	435, 566, 590, 611
DdeI	CTNAG	2 cut(s)	209, 289
DpnI	GATC	3 cut(s)	168, 417, 540
DpnII	GATC	3 cut(s)	166, 415, 538
EaeI	YGGCCR	2 cut(s)	3, 69
EagI	CGGCCG	1 cut(s)	69
Eam1104I	CTCTTC	2 cut(s)	282, 322
EarI	CTCTTC	2 cut(s)	282, 322
EciI	GGCGGA	1 cut(s)	474
EclXI	CGGCCG	1 cut(s)	69
Eco130I	CCWWGG	1 cut(s)	690
Eco47I	GGWCC	2 cut(s)	145, 506
Eco52I	CGGCCG	1 cut(s)	69
Eco57I	CTGAAG	1 cut(s)	303
Eco88I	CYCGRG	1 cut(s)	667
EcoRII	CCWGG	2 cut(s)	237, 699
EcoT14I	CCWWGG	1 cut(s)	690
ErhI	CCWWGG	1 cut(s)	690
FaeI	CATG	2 cut(s)	27, 266
FalI	AAGNNNNNCTT	4 cut(s)	301, 333, 707, 739
FaqI	GGGAC	1 cut(s)	519
FatI	CATG	2 cut(s)	23, 262
FauI	CCCGC	3 cut(s)	4, 63, 139
FauNDI	CATATG	2 cut(s)	535, 544
FbaI	TGATCA	1 cut(s)	415
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	5 cut(s)	48, 81, 304, 663, 682
FokI	GGATG	3 cut(s)	2, 220, 468
Fsp4HI	GCNGC	5 cut(s)	48, 81, 304, 663, 682
GlaI	GCGC	1 cut(s)	710
GluI	GCNGC	5 cut(s)	48, 81, 304, 663, 682
GsaI	CCCAGC	1 cut(s)	603
GsuI	CTGGAG	2 cut(s)	546, 722
HaeIII	GGCC	2 cut(s)	5, 71
HapII	CCGG	5 cut(s)	6, 44, 68, 221, 614
HhaI	GCGC	1 cut(s)	711
Hin1II	CATG	2 cut(s)	27, 266
Hin6I	GCGC	1 cut(s)	709
HinP1I	GCGC	1 cut(s)	709
HincII	GTYRAC	2 cut(s)	115, 244
HindII	GTYRAC	2 cut(s)	115, 244
HinfI	GANTC	3 cut(s)	380, 401, 695
HpaII	CCGG	5 cut(s)	6, 44, 68, 221, 614
HphI	GGTGA	2 cut(s)	95, 452
Hpy166II	GTNNAC	3 cut(s)	115, 244, 425
Hpy188I	TCNGA	3 cut(s)	212, 322, 621
Hpy188III	TCNNGA	3 cut(s)	173, 641, 715
Hpy8I	GTNNAC	3 cut(s)	115, 244, 425
Hpy99I	CGWCG	2 cut(s)	113, 116
HpyAV	CCTTC	3 cut(s)	178, 588, 622
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	3 cut(s)	306, 359, 728
HpyF10VI	GCNNNNNNNGC	5 cut(s)	40, 77, 294, 303, 312
HpyF3I	CTNAG	2 cut(s)	209, 289
HpySE526I	ACGT	1 cut(s)	108
Hsp92II	CATG	2 cut(s)	27, 266
HspAI	GCGC	1 cut(s)	709
KroI	GCCGGC	1 cut(s)	43
KroNI	GCCGGC	1 cut(s)	45
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	3 cut(s)	166, 415, 538
LguI	GCTCTTC	2 cut(s)	282, 322
LmnI	GCTCC	1 cut(s)	565
Lsp1109I	GCAGC	4 cut(s)	59, 67, 290, 649
LweI	GCATC	3 cut(s)	24, 242, 302
MaeII	ACGT	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	440
MalI	GATC	3 cut(s)	168, 417, 540
MboI	GATC	3 cut(s)	166, 415, 538
MboII	GAAGA	6 cut(s)	67, 161, 188, 269, 309, 389
MroNI	GCCGGC	1 cut(s)	43
MspI	CCGG	5 cut(s)	6, 44, 68, 221, 614
MspR9I	CCNGG	3 cut(s)	222, 239, 701
MvaI	CCWGG	2 cut(s)	239, 701
MwoI	GCNNNNNNNGC	5 cut(s)	40, 77, 294, 303, 312
NaeI	GCCGGC	1 cut(s)	45
NciI	CCSGG	1 cut(s)	222
NdeI	CATATG	2 cut(s)	535, 544
NdeII	GATC	3 cut(s)	166, 415, 538
NgoMIV	GCCGGC	1 cut(s)	43
NlaIII	CATG	2 cut(s)	27, 266
NlaIV	GGNNCC	3 cut(s)	42, 507, 525
NmuCI	GTSAC	1 cut(s)	440
PciSI	GCTCTTC	2 cut(s)	282, 322
PdiI	GCCGGC	1 cut(s)	45
PfeI	GAWTC	3 cut(s)	380, 401, 695
PinAI	ACCGGT	1 cut(s)	613
PkrI	GCNGC	5 cut(s)	49, 82, 305, 664, 683
Psp6I	CCWGG	2 cut(s)	237, 699
PspFI	CCCAGC	1 cut(s)	599
PspGI	CCWGG	2 cut(s)	237, 699
PspN4I	GGNNCC	3 cut(s)	42, 507, 525
PspPI	GGNCC	2 cut(s)	145, 506
RsaI	GTAC	4 cut(s)	436, 567, 591, 612
RsaNI	GTAC	4 cut(s)	435, 566, 590, 611
SalI	GTCGAC	1 cut(s)	113
SapI	GCTCTTC	2 cut(s)	282, 322
SatI	GCNGC	5 cut(s)	48, 81, 304, 663, 682
Sau3AI	GATC	3 cut(s)	166, 415, 538
Sau96I	GGNCC	2 cut(s)	145, 506
ScrFI	CCNGG	3 cut(s)	222, 239, 701
SfaNI	GCATC	3 cut(s)	24, 242, 302
SinI	GGWCC	2 cut(s)	145, 506
SmlI	CTYRAG	1 cut(s)	713
SmoI	CTYRAG	1 cut(s)	713
SsiI	CCGC	8 cut(s)	11, 56, 132, 148, 351, 485, 491, 682
StyD4I	CCNGG	3 cut(s)	220, 237, 699
StyI	CCWWGG	1 cut(s)	690
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	3 cut(s)	114, 334, 345
TauI	GCSGC	1 cut(s)	684
TfiI	GAWTC	3 cut(s)	380, 401, 695
TscAI	CASTG	2 cut(s)	169, 477
TseFI	GTSAC	1 cut(s)	440
TseI	GCWGC	4 cut(s)	47, 80, 303, 662
Tsp45I	GTSAC	1 cut(s)	440
TspDTI	ATGAA	3 cut(s)	148, 390, 470
TspRI	CASTG	2 cut(s)	169, 477
VpaK11BI	GGWCC	2 cut(s)	145, 506
XmiI	GTMKAC	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.