Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001964

Physical Location & Seq

Genomic Coordinates Forward (+)

9126851 .. 9128416

Gene Structure 1566 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G25050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGACTATATGAGAATCTTTAGTGTTTTTGTAGTAACGTTATGGATCATAAGGGTTGATGCTAGGGTTTTCGGAGGACGAGGAATCGAAAAATTTGTAACTTTCGGTCAGAATTATATTGTTACGTGGGGACAAAGTCATGTTTCTACACTCCATTCTGGCGAAGAAGTTGATCTTTACATGGATCAATCTTCAGGTGGTGGGTTCGAATCCAAGGACGCCTACGGATCAGGTCTCTTTGAAATGAGAATCAAAGTGCCTTCAGGAAATACTGGCGGCATCGTCACCGCTTTTTACTTGACGTCGAAAGGAGGTGGTCACGACGAGATTGACTTCGAGTTTCTAGGGAACAACAACGGAAAACCGGTAACGTTACAGACAAATCTGTTTCTAAATGGAGAAGGAAACAGAGAAGAGAGGTTTTTGCTTTGGTTCAATCCAACCAAACACTACCACACTTATGGGCTTCTTTGGAACCCTTACCAAATTGTGTTTTACGTGGACAACATCCCAATAAGAGTATACAAAAACGAAAACGGCGTAAGTTATCCATCAAAGCCTATGCAAGTCGAGGCTAGTCTCTGGAACGGTGACGATTGGGCGACTGATGGTGGTCGGACTAAGGTTAACTGGTCATACTCTCCTTTCATTGCACATTTCCGAGACTTCGCCTTATCCGGCTGCAACATAGATGGTCGGAGTAATAATGTCGGCGCTTGTGAATCCTCCAACTACTGGTGGAATGCAGGCAACTATCAAAGATTAAGCGGAAACGAACAGAAACTTTATGAACATGTGAGGAGCAAGTACATGAACTATGACTATTGTACTGATCGCTCTAAGTACCAAACTCCTCCTAGAGAATGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009832 GO:0009987 GO:0010228 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0022414 GO:0030243 GO:0032501 GO:0032502 GO:0042546 GO:0043170 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0046527 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051273 GO:0061458 GO:0071554 GO:0071669 GO:0071704 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

290

Amino Acids

33.26

Weight (kDa)

5.99

Isoelectric Point (pI)

37.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	36 - 212	3.7e-63	Glycosyl hydrolases family 16
XET_C	PF06955	242 - 289	2.3e-15	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25050 AT4G13080 AT4G13090
fragaria_vesca	FvH4_2g18760 FvH4_2g18761 FvH4_3g26030 FvH4_3g26030
malus_domestica	MD03G1093100.v1.1 MD05G1173300.v1.1 MD05G1173400.v1.1 MD05G1173600.v1.1
prunus_persica	Prupe.8G200900_v2.0.a1 Prupe.8G200900_v2.0.a1 Prupe.8G200900_v2.0.a1 Prupe.8G201000_v2.0.a1
pyrus_communis	pycom05g16020 pycom05g16030 pycom05g16040
rosa_chinensis	RchiOBHm_Chr5g0047321 RchiOBHm_Chr6g0284451 RchiOBHm_Chr6g0284461 RchiOBHm_Chr6g0284491
rosa_laevigata	RLG00000012742 RLG00000012743
rosa_roxburghii	Rroxscaffold_1G00034030 Rroxscaffold_7G00184670 Rroxscaffold_7G00184680 Rroxscaffold_7G00184690
rosa_rugosa	Rorug05G0235900 Rorug06G0163800
rosa_samantha	Rh5BG323400 Rh5CG350600 Rh5DG334400 Rh6AG276600 Rh6AG276900 Rh6BG276600 Rh6BG276700 Rh6CG278600 Rh6CG278700 Rh6CG278900 Rh6DG271000 Rh6DG271100 Rh6DG271300
rosa_wichuraiana	Rw6G023760 Rw6G023770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	305
AccB7I	CCANNNNNTGG	1 cut(s)	735
AccI	GTMKAC	1 cut(s)	522
AciI	CCGC	3 cut(s)	276, 288, 768
AclI	AACGTT	2 cut(s)	38, 371
AclWI	GGATC	3 cut(s)	53, 192, 235
AcsI	RAATTY	1 cut(s)	92
AcuI	CTGAAG	2 cut(s)	177, 246
AcyI	GRCGYC	2 cut(s)	219, 302
AfaI	GTAC	3 cut(s)	809, 829, 845
AfiI	CCNNNNNNNGG	1 cut(s)	735
AflIII	ACRYGT	1 cut(s)	793
AgeI	ACCGGT	1 cut(s)	364
AgsI	TTSAA	2 cut(s)	242, 436
Alw26I	GTCTC	3 cut(s)	239, 584, 657
AlwI	GGATC	3 cut(s)	53, 192, 235
ApeKI	GCWGC	1 cut(s)	681
ApoI	RAATTY	1 cut(s)	92
AsiGI	ACCGGT	1 cut(s)	364
AspLEI	GCGC	1 cut(s)	716
AsuHPI	GGTGA	2 cut(s)	277, 602
AsuII	TTCGAA	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	668
BccI	CCATC	3 cut(s)	559, 602, 686
BceAI	ACGGC	1 cut(s)	553
BcoDI	GTCTC	3 cut(s)	239, 584, 657
BfaI	CTAG	4 cut(s)	63, 344, 576, 858
BfoI	RGCGCY	1 cut(s)	717
BisI	GCNGC	2 cut(s)	277, 682
BlsI	GCNGC	2 cut(s)	278, 683
BmiI	GGNNCC	1 cut(s)	476
BmsI	GCATC	2 cut(s)	49, 288
Bpu14I	TTCGAA	1 cut(s)	207
BsaAI	YACGTR	2 cut(s)	126, 499
BsaHI	GRCGYC	2 cut(s)	219, 302
BsaI	GGTCTC	1 cut(s)	239
BsaJI	CCNNGG	1 cut(s)	213
BsaWI	WCCGGW	1 cut(s)	364
Bsc4I	CCNNNNNNNGG	1 cut(s)	735
Bse118I	RCCGGY	1 cut(s)	364
Bse1I	ACTGG	3 cut(s)	277, 635, 740
Bse3DI	GCAATG	1 cut(s)	648
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	1 cut(s)	507
BseLI	CCNNNNNNNGG	1 cut(s)	735
BseMI	GCAATG	1 cut(s)	648
BseNI	ACTGG	3 cut(s)	277, 635, 740
BseRI	GAGGAG	2 cut(s)	814, 843
BseXI	GCAGC	1 cut(s)	668
BshTI	ACCGGT	1 cut(s)	364
BsiSI	CCGG	2 cut(s)	365, 678
BslFI	GGGAC	1 cut(s)	144
BslI	CCNNNNNNNGG	1 cut(s)	735
BsmAI	GTCTC	3 cut(s)	239, 584, 657
BsmFI	GGGAC	1 cut(s)	144
BsmI	GAATGC	1 cut(s)	748
Bso31I	GGTCTC	1 cut(s)	239
Bsp119I	TTCGAA	1 cut(s)	207
Bsp143I	GATC	5 cut(s)	45, 172, 184, 227, 832
BspACI	CCGC	3 cut(s)	276, 288, 768
BspLI	GGNNCC	1 cut(s)	476
BspPI	GGATC	3 cut(s)	53, 192, 235
BspT104I	TTCGAA	1 cut(s)	207
BspTNI	GGTCTC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	648
BsrFI	RCCGGY	1 cut(s)	364
BsrI	ACTGG	3 cut(s)	277, 635, 740
BssAI	RCCGGY	1 cut(s)	364
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	5 cut(s)	45, 172, 184, 227, 832
BssNAI	GTATAC	1 cut(s)	523
BssNI	GRCGYC	2 cut(s)	219, 302
BssT1I	CCWWGG	1 cut(s)	213
Bst1107I	GTATAC	1 cut(s)	523
Bst4CI	ACNGT	1 cut(s)	590
Bst6I	CTCTTC	1 cut(s)	408
BstACI	GRCGYC	2 cut(s)	219, 302
BstBAI	YACGTR	2 cut(s)	126, 499
BstBI	TTCGAA	1 cut(s)	207
BstC8I	GCNNGC	1 cut(s)	748
BstDEI	CTNAG	2 cut(s)	621, 840
BstF5I	GGATG	1 cut(s)	507
BstH2I	RGCGCY	1 cut(s)	717
BstHHI	GCGC	1 cut(s)	716
BstKTI	GATC	5 cut(s)	48, 175, 187, 230, 835
BstMAI	GTCTC	3 cut(s)	239, 584, 657
BstMBI	GATC	5 cut(s)	45, 172, 184, 227, 832
BstNSI	RCATGY	1 cut(s)	797
BstV1I	GCAGC	1 cut(s)	668
BstXI	CCANNNNNNTGG	1 cut(s)	461
BstZ17I	GTATAC	1 cut(s)	523
BtsCI	GGATG	1 cut(s)	507
Cac8I	GCNNGC	1 cut(s)	748
CfoI	GCGC	1 cut(s)	716
Cfr10I	RCCGGY	1 cut(s)	364
CseI	GACGC	1 cut(s)	227
Csp6I	GTAC	3 cut(s)	808, 828, 844
CspAI	ACCGGT	1 cut(s)	364
CviAII	CATG	4 cut(s)	140, 181, 794, 811
CviJI	RGCY	4 cut(s)	466, 559, 575, 681
CviKI_1	RGCY	4 cut(s)	466, 559, 575, 681
CviQI	GTAC	3 cut(s)	808, 828, 844
DdeI	CTNAG	2 cut(s)	621, 840
DpnI	GATC	5 cut(s)	47, 174, 186, 229, 834
DpnII	GATC	5 cut(s)	45, 172, 184, 227, 832
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
Eco130I	CCWWGG	1 cut(s)	213
Eco31I	GGTCTC	1 cut(s)	239
Eco57I	CTGAAG	2 cut(s)	177, 246
EcoT14I	CCWWGG	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	4 cut(s)	143, 184, 797, 814
FalI	AAGNNNNNCTT	2 cut(s)	159, 191
FaqI	GGGAC	1 cut(s)	144
FatI	CATG	4 cut(s)	139, 180, 793, 810
FblI	GTMKAC	1 cut(s)	522
Fnu4HI	GCNGC	2 cut(s)	277, 682
FokI	GGATG	1 cut(s)	494
Fsp4HI	GCNGC	2 cut(s)	277, 682
FspBI	CTAG	4 cut(s)	63, 344, 576, 858
GlaI	GCGC	1 cut(s)	715
GluI	GCNGC	2 cut(s)	277, 682
HaeII	RGCGCY	1 cut(s)	717
HapII	CCGG	2 cut(s)	365, 678
HgaI	GACGC	1 cut(s)	227
HhaI	GCGC	1 cut(s)	716
Hin1I	GRCGYC	2 cut(s)	219, 302
Hin1II	CATG	4 cut(s)	143, 184, 797, 814
Hin6I	GCGC	1 cut(s)	714
HinP1I	GCGC	1 cut(s)	714
HincII	GTYRAC	1 cut(s)	628
HindII	GTYRAC	1 cut(s)	628
HinfI	GANTC	5 cut(s)	15, 84, 209, 249, 722
HpaI	GTTAAC	1 cut(s)	628
HpaII	CCGG	2 cut(s)	365, 678
HphI	GGTGA	2 cut(s)	277, 602
Hpy166II	GTNNAC	3 cut(s)	502, 523, 628
Hpy188I	TCNGA	5 cut(s)	74, 111, 618, 662, 699
Hpy188III	TCNNGA	3 cut(s)	264, 320, 583
Hpy8I	GTNNAC	3 cut(s)	502, 523, 628
Hpy99I	CGWCG	2 cut(s)	307, 326
HpyAV	CCTTC	2 cut(s)	270, 395
HpyCH4III	ACNGT	1 cut(s)	590
HpyCH4IV	ACGT	5 cut(s)	38, 125, 302, 371, 498
HpyCH4V	TGCA	4 cut(s)	565, 653, 684, 746
HpyF3I	CTNAG	2 cut(s)	621, 840
HpySE526I	ACGT	5 cut(s)	38, 125, 302, 371, 498
Hsp92I	GRCGYC	2 cut(s)	219, 302
Hsp92II	CATG	4 cut(s)	143, 184, 797, 814
HspAI	GCGC	1 cut(s)	714
KspAI	GTTAAC	1 cut(s)	628
Kzo9I	GATC	5 cut(s)	45, 172, 184, 227, 832
LmnI	GCTCC	1 cut(s)	801
Lsp1109I	GCAGC	1 cut(s)	668
LweI	GCATC	2 cut(s)	49, 288
MaeI	CTAG	4 cut(s)	63, 344, 576, 858
MaeII	ACGT	5 cut(s)	38, 125, 302, 371, 498
MaeIII	GTNAC	8 cut(s)	34, 97, 121, 283, 317, 367, 372, 590
MalI	GATC	5 cut(s)	47, 174, 186, 229, 834
MboI	GATC	5 cut(s)	45, 172, 184, 227, 832
MboII	GAAGA	3 cut(s)	176, 183, 425
MluCI	AATT	3 cut(s)	92, 112, 486
MmeI	TCCRAC	4 cut(s)	464, 596, 677, 753
MnlI	CCTC	8 cut(s)	68, 74, 305, 411, 565, 736, 792, 864
MseI	TTAA	2 cut(s)	627, 764
MslI	CAYNNNNRTG	1 cut(s)	459
MspI	CCGG	2 cut(s)	365, 678
Mva1269I	GAATGC	1 cut(s)	748
NdeII	GATC	5 cut(s)	45, 172, 184, 227, 832
NlaIII	CATG	4 cut(s)	143, 184, 797, 814
NlaIV	GGNNCC	1 cut(s)	476
NmuCI	GTSAC	3 cut(s)	283, 317, 590
NspI	RCATGY	1 cut(s)	797
NspV	TTCGAA	1 cut(s)	207
PciI	ACATGT	1 cut(s)	793
PcsI	WCGNNNNNNNCGW	1 cut(s)	537
PctI	GAATGC	1 cut(s)	748
PfeI	GAWTC	5 cut(s)	15, 84, 209, 249, 722
PflFI	GACNNNGTC	1 cut(s)	135
PflMI	CCANNNNNTGG	1 cut(s)	735
PinAI	ACCGGT	1 cut(s)	364
PkrI	GCNGC	2 cut(s)	278, 683
Ppu21I	YACGTR	2 cut(s)	126, 499
PscI	ACATGT	1 cut(s)	793
Psp1406I	AACGTT	2 cut(s)	38, 371
PspN4I	GGNNCC	1 cut(s)	476
PsyI	GACNNNGTC	1 cut(s)	135
RsaI	GTAC	3 cut(s)	809, 829, 845
RsaNI	GTAC	3 cut(s)	808, 828, 844
RseI	CAYNNNNRTG	1 cut(s)	459
SaqAI	TTAA	2 cut(s)	627, 764
SatI	GCNGC	2 cut(s)	277, 682
Sau3AI	GATC	5 cut(s)	45, 172, 184, 227, 832
SfaNI	GCATC	2 cut(s)	49, 288
SfuI	TTCGAA	1 cut(s)	207
SmiMI	CAYNNNNRTG	1 cut(s)	459
Sse9I	AATT	3 cut(s)	92, 112, 486
SsiI	CCGC	3 cut(s)	276, 288, 768
SspMI	CTAG	4 cut(s)	63, 344, 576, 858
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	1 cut(s)	590
TaiI	ACGT	5 cut(s)	41, 128, 305, 374, 501
TaqI	TCGA	5 cut(s)	87, 207, 305, 336, 570
TaqII	GACCGA	1 cut(s)	95
TasI	AATT	3 cut(s)	92, 112, 486
TatI	WGTACW	2 cut(s)	807, 827
TauI	GCSGC	1 cut(s)	279
TfiI	GAWTC	5 cut(s)	15, 84, 209, 249, 722
Tru1I	TTAA	2 cut(s)	627, 764
Tru9I	TTAA	2 cut(s)	627, 764
TseFI	GTSAC	3 cut(s)	283, 317, 590
TseI	GCWGC	1 cut(s)	681
Tsp45I	GTSAC	3 cut(s)	283, 317, 590
TspDTI	ATGAA	3 cut(s)	637, 804, 827
TspGWI	ACGGA	2 cut(s)	240, 372
Tth111I	GACNNNGTC	1 cut(s)	135
Van91I	CCANNNNNTGG	1 cut(s)	735
XapI	RAATTY	1 cut(s)	92
XceI	RCATGY	1 cut(s)	797
XmiI	GTMKAC	1 cut(s)	522
XspI	CTAG	4 cut(s)	63, 344, 576, 858
ZraI	GACGTC	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.