Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001964

Physical Location & Seq

Genomic Coordinates Forward (+)

23988537 .. 23990182

Gene Structure 1646 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00184680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCTTCTTCAGTGAATGGTTTTTGTATGTTTCTTTTGCTTTTTGTTTGTGGTGGGATGCTTGCAAATGGGGACACTGGCTTCGACGAAAATTATAATGTCTCATGGGGATTTGACCATGCCTTGCGTACGGATGAAGGGAGACAAATGCAGATCTACATGGATAAATATTCGGGTTATTATTATCGATCTACATTGATCTACCTCTTCCTTAAGATCGATGATCGGCAGGATGAGATGGACTTTGAGTTCTTGGGTAATAGAGAAGGCAAGCCAATCGTATTGCAGACCAATGTGATTACTAATGGTGATAATAGAGAGCAAAGGATTCTTTTTTGGTTTGATCCCACATCAGATTTTCATGACTACAAAATTCTTTGGAATCAGCATCAAATTGTTTTTTATGTCGACGATAAAGCAATTAGGGTTTACAAGAACAATGAAAATATTAGGGTTCCCTACCCATCACGGCCAATGATAATAGACGCAAGCAAATGGGATGTATCAAATTGGGCAGCTGATGGAGGCCAAACAAAGATCGACTGGAACCATGCACCATTTAGAGCTTACTTCCAAGGGTTTGACATAAGTTCTGGCTGTACACTAGATAAGTCCAGGACCGATGTTAAGGAATGTTATGCATCCACATACTTGTGGAACCATCAGGAGTATTGGCAACTAAACTCAACCGAACAACAAGCATATGAGAAGGTGAGAAAGGAACAGACGAACTATGACTACTGTATAGCAAGGTTCCCTACACCTCCCGGCCCCCAGAGTGCAGTAGTAATTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009832 GO:0009987 GO:0010228 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0022414 GO:0030243 GO:0032501 GO:0032502 GO:0042546 GO:0043170 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0046527 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051273 GO:0061458 GO:0071554 GO:0071669 GO:0071704 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

265

Amino Acids

31.16

Weight (kDa)

5.14

Isoelectric Point (pI)

36.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	68 - 183	3e-36	Glycosyl hydrolases family 16
XET_C	PF06955	216 - 256	1.1e-06	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25050 AT4G13080 AT4G13090
fragaria_vesca	FvH4_2g18760 FvH4_2g18761 FvH4_3g26030 FvH4_3g26030
malus_domestica	MD03G1093100.v1.1 MD05G1173300.v1.1 MD05G1173400.v1.1 MD05G1173600.v1.1
prunus_persica	Prupe.8G200900_v2.0.a1 Prupe.8G200900_v2.0.a1 Prupe.8G200900_v2.0.a1 Prupe.8G201000_v2.0.a1
pyrus_communis	pycom05g16020 pycom05g16030 pycom05g16040
rosa_chinensis	RchiOBHm_Chr5g0047321 RchiOBHm_Chr6g0284451 RchiOBHm_Chr6g0284461 RchiOBHm_Chr6g0284491
rosa_laevigata	RLG00000012742 RLG00000012743
rosa_roxburghii	Rroxscaffold_1G00034030 Rroxscaffold_7G00184670 Rroxscaffold_7G00184680 Rroxscaffold_7G00184690
rosa_rugosa	Rorug05G0235900 Rorug06G0163800
rosa_samantha	Rh5BG323400 Rh5CG350600 Rh5DG334400 Rh6AG276600 Rh6AG276900 Rh6BG276600 Rh6BG276700 Rh6CG278600 Rh6CG278700 Rh6CG278900 Rh6DG271000 Rh6DG271100 Rh6DG271300
rosa_wichuraiana	Rw6G023760 Rw6G023770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	96
AccI	GTMKAC	1 cut(s)	408
AclWI	GGATC	1 cut(s)	338
AcoI	YGGCCR	1 cut(s)	470
AcsI	RAATTY	1 cut(s)	372
AfaI	GTAC	2 cut(s)	130, 601
AflII	CTTAAG	1 cut(s)	212
AjnI	CCWGG	1 cut(s)	614
AloI	GAACNNNNNNTCC	2 cut(s)	233, 265
AluBI	AGCT	2 cut(s)	518, 566
AluI	AGCT	2 cut(s)	518, 566
Alw26I	GTCTC	2 cut(s)	106, 136
AlwI	GGATC	1 cut(s)	338
AoxI	GGCC	3 cut(s)	470, 526, 769
ApeKI	GCWGC	1 cut(s)	515
ApoI	RAATTY	1 cut(s)	372
ArsI	GACNNNNNNTTYG	2 cut(s)	65, 97
AspS9I	GGNCC	2 cut(s)	618, 770
AsuC2I	CCSGG	1 cut(s)	768
AsuHPI	GGTGA	2 cut(s)	320, 724
AvaII	GGWCC	1 cut(s)	618
BbvI	GCAGC	1 cut(s)	527
BccI	CCATC	4 cut(s)	232, 472, 515, 669
BceAI	ACGGC	1 cut(s)	485
BcgI	CGANNNNNNTGC	2 cut(s)	259, 293
BciT130I	CCWGG	1 cut(s)	616
BcnI	CCSGG	1 cut(s)	768
BcoDI	GTCTC	2 cut(s)	106, 136
BfaI	CTAG	1 cut(s)	605
BfrI	CTTAAG	1 cut(s)	212
BglII	AGATCT	1 cut(s)	153
BisI	GCNGC	1 cut(s)	516
BlsI	GCNGC	1 cut(s)	517
Bme1390I	CCNGG	2 cut(s)	616, 768
Bme18I	GGWCC	1 cut(s)	618
BmgT120I	GGNCC	2 cut(s)	618, 770
BmiI	GGNNCC	5 cut(s)	456, 548, 659, 755, 772
BmrFI	CCNGG	2 cut(s)	616, 768
BmsI	GCATC	3 cut(s)	48, 397, 650
BpuMI	CCSGG	1 cut(s)	768
Bsa29I	ATCGAT	2 cut(s)	187, 219
BsaJI	CCNNGG	1 cut(s)	574
Bse1I	ACTGG	2 cut(s)	82, 548
BseBI	CCWGG	1 cut(s)	616
BseCI	ATCGAT	2 cut(s)	187, 219
BseDI	CCNNGG	1 cut(s)	574
BseGI	GGATG	5 cut(s)	63, 139, 238, 505, 641
BseNI	ACTGG	2 cut(s)	82, 548
BseXI	GCAGC	1 cut(s)	527
BshFI	GGCC	3 cut(s)	472, 528, 771
BshVI	ATCGAT	2 cut(s)	187, 219
BsiSI	CCGG	1 cut(s)	768
BsiWI	CGTACG	1 cut(s)	128
BslFI	GGGAC	1 cut(s)	86
BsmAI	GTCTC	2 cut(s)	106, 136
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	3 cut(s)	472, 528, 771
Bsp1407I	TGTACA	1 cut(s)	599
Bsp143I	GATC	7 cut(s)	153, 188, 198, 216, 223, 343, 537
BspANI	GGCC	3 cut(s)	472, 528, 771
BspDI	ATCGAT	2 cut(s)	187, 219
BspHI	TCATGA	1 cut(s)	361
BspLI	GGNNCC	5 cut(s)	456, 548, 659, 755, 772
BspPI	GGATC	1 cut(s)	338
BspTI	CTTAAG	1 cut(s)	212
BsrGI	TGTACA	1 cut(s)	599
BsrI	ACTGG	2 cut(s)	82, 548
BssECI	CCNNGG	1 cut(s)	574
BssMI	GATC	7 cut(s)	153, 188, 198, 216, 223, 343, 537
BssT1I	CCWWGG	1 cut(s)	574
Bst2UI	CCWGG	1 cut(s)	616
Bst4CI	ACNGT	1 cut(s)	743
Bst6I	CTCTTC	1 cut(s)	212
BstAFI	CTTAAG	1 cut(s)	212
BstAUI	TGTACA	1 cut(s)	599
BstC8I	GCNNGC	3 cut(s)	63, 272, 490
BstF5I	GGATG	5 cut(s)	63, 139, 238, 505, 641
BstKTI	GATC	7 cut(s)	156, 191, 201, 219, 226, 346, 540
BstMAI	GTCTC	2 cut(s)	106, 136
BstMBI	GATC	7 cut(s)	153, 188, 198, 216, 223, 343, 537
BstNI	CCWGG	1 cut(s)	616
BstSCI	CCNGG	2 cut(s)	614, 766
BstV1I	GCAGC	1 cut(s)	527
BstX2I	RGATCY	1 cut(s)	153
BstYI	RGATCY	1 cut(s)	153
Bsu15I	ATCGAT	2 cut(s)	187, 219
BsuRI	GGCC	3 cut(s)	472, 528, 771
BsuTUI	ATCGAT	2 cut(s)	187, 219
BtsCI	GGATG	5 cut(s)	63, 139, 238, 505, 641
BtsIMutI	CAGTG	2 cut(s)	18, 75
Cac8I	GCNNGC	3 cut(s)	63, 272, 490
CciI	TCATGA	1 cut(s)	361
Cfr13I	GGNCC	2 cut(s)	618, 770
ClaI	ATCGAT	2 cut(s)	187, 219
CseI	GACGC	1 cut(s)	494
Csp6I	GTAC	2 cut(s)	129, 600
CviAII	CATG	5 cut(s)	105, 119, 160, 362, 551
CviJI	RGCY	9 cut(s)	5, 81, 274, 472, 518, 528, 566, 597, 771
CviKI_1	RGCY	9 cut(s)	5, 81, 274, 472, 518, 528, 566, 597, 771
CviQI	GTAC	2 cut(s)	129, 600
DpnI	GATC	7 cut(s)	155, 190, 200, 218, 225, 345, 539
DpnII	GATC	7 cut(s)	153, 188, 198, 216, 223, 343, 537
EaeI	YGGCCR	1 cut(s)	470
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
Eco130I	CCWWGG	1 cut(s)	574
Eco47I	GGWCC	1 cut(s)	618
EcoRII	CCWGG	1 cut(s)	614
EcoT14I	CCWWGG	1 cut(s)	574
EcoT22I	ATGCAT	1 cut(s)	643
ErhI	CCWWGG	1 cut(s)	574
FaeI	CATG	5 cut(s)	108, 122, 163, 365, 554
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	5 cut(s)	104, 118, 159, 361, 550
FauNDI	CATATG	1 cut(s)	703
FblI	GTMKAC	1 cut(s)	408
Fnu4HI	GCNGC	1 cut(s)	516
FokI	GGATG	5 cut(s)	70, 146, 245, 512, 628
Fsp4HI	GCNGC	1 cut(s)	516
FspBI	CTAG	1 cut(s)	605
GluI	GCNGC	1 cut(s)	516
HaeIII	GGCC	3 cut(s)	472, 528, 771
HapII	CCGG	1 cut(s)	768
HgaI	GACGC	1 cut(s)	494
Hin1II	CATG	5 cut(s)	108, 122, 163, 365, 554
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HinfI	GANTC	2 cut(s)	328, 382
HpaII	CCGG	1 cut(s)	768
HphI	GGTGA	2 cut(s)	320, 724
Hpy166II	GTNNAC	3 cut(s)	409, 430, 602
Hpy188I	TCNGA	1 cut(s)	355
Hpy188III	TCNNGA	2 cut(s)	362, 665
Hpy8I	GTNNAC	3 cut(s)	409, 430, 602
Hpy99I	CGWCG	2 cut(s)	89, 413
HpyAV	CCTTC	3 cut(s)	131, 260, 703
HpyCH4III	ACNGT	1 cut(s)	743
HpyCH4V	TGCA	6 cut(s)	65, 151, 286, 554, 641, 782
Hsp92II	CATG	5 cut(s)	108, 122, 163, 365, 554
Kzo9I	GATC	7 cut(s)	153, 188, 198, 216, 223, 343, 537
LpnPI	CCDG	9 cut(s)	63, 215, 529, 579, 601, 628, 650, 781, 788
Lsp1109I	GCAGC	1 cut(s)	527
LweI	GCATC	3 cut(s)	48, 397, 650
MaeI	CTAG	1 cut(s)	605
MalI	GATC	7 cut(s)	155, 190, 200, 218, 225, 345, 539
MboI	GATC	7 cut(s)	153, 188, 198, 216, 223, 343, 537
MboII	GAAGA	1 cut(s)	199
MflI	RGATCY	1 cut(s)	153
MluCI	AATT	6 cut(s)	91, 372, 393, 420, 508, 789
MnlI	CCTC	3 cut(s)	215, 518, 774
Mph1103I	ATGCAT	1 cut(s)	643
MseI	TTAA	2 cut(s)	213, 627
MslI	CAYNNNNRTG	1 cut(s)	652
MspA1I	CMGCKG	1 cut(s)	518
MspCI	CTTAAG	1 cut(s)	212
MspI	CCGG	1 cut(s)	768
MspR9I	CCNGG	2 cut(s)	616, 768
MvaI	CCWGG	1 cut(s)	616
NciI	CCSGG	1 cut(s)	768
NdeI	CATATG	1 cut(s)	703
NdeII	GATC	7 cut(s)	153, 188, 198, 216, 223, 343, 537
NlaIII	CATG	5 cut(s)	108, 122, 163, 365, 554
NlaIV	GGNNCC	5 cut(s)	456, 548, 659, 755, 772
NsiI	ATGCAT	1 cut(s)	643
PagI	TCATGA	1 cut(s)	361
PfeI	GAWTC	2 cut(s)	328, 382
Pfl23II	CGTACG	1 cut(s)	128
PfoI	TCCNGGA	1 cut(s)	614
PkrI	GCNGC	1 cut(s)	517
PsiI	TTATAA	1 cut(s)	96
Psp6I	CCWGG	1 cut(s)	614
PspGI	CCWGG	1 cut(s)	614
PspLI	CGTACG	1 cut(s)	128
PspN4I	GGNNCC	5 cut(s)	456, 548, 659, 755, 772
PspPI	GGNCC	2 cut(s)	618, 770
PsrI	GAACNNNNNNTAC	2 cut(s)	722, 754
PsuI	RGATCY	1 cut(s)	153
PvuII	CAGCTG	1 cut(s)	518
RsaI	GTAC	2 cut(s)	130, 601
RsaNI	GTAC	2 cut(s)	129, 600
RseI	CAYNNNNRTG	1 cut(s)	652
SalI	GTCGAC	1 cut(s)	407
SaqAI	TTAA	2 cut(s)	213, 627
SatI	GCNGC	1 cut(s)	516
Sau3AI	GATC	7 cut(s)	153, 188, 198, 216, 223, 343, 537
Sau96I	GGNCC	2 cut(s)	618, 770
ScrFI	CCNGG	2 cut(s)	616, 768
SetI	ASST	6 cut(s)	207, 520, 568, 714, 755, 766
SfaNI	GCATC	3 cut(s)	48, 397, 650
SinI	GGWCC	1 cut(s)	618
SmiMI	CAYNNNNRTG	1 cut(s)	652
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	6 cut(s)	91, 372, 393, 420, 508, 789
SspI	AATATT	2 cut(s)	170, 448
SspMI	CTAG	1 cut(s)	605
StyD4I	CCNGG	2 cut(s)	614, 766
StyI	CCWWGG	1 cut(s)	574
TaaI	ACNGT	1 cut(s)	743
TaqI	TCGA	5 cut(s)	84, 187, 219, 408, 540
TaqII	GACCGA	1 cut(s)	635
TasI	AATT	6 cut(s)	91, 372, 393, 420, 508, 789
TatI	WGTACW	1 cut(s)	599
TfiI	GAWTC	2 cut(s)	328, 382
Tru1I	TTAA	2 cut(s)	213, 627
Tru9I	TTAA	2 cut(s)	213, 627
TscAI	CASTG	2 cut(s)	18, 82
TseI	GCWGC	1 cut(s)	515
TspDTI	ATGAA	3 cut(s)	150, 350, 456
TspGWI	ACGGA	1 cut(s)	146
TspRI	CASTG	2 cut(s)	18, 82
Vha464I	CTTAAG	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	618
XapI	RAATTY	1 cut(s)	372
XmiI	GTMKAC	1 cut(s)	408
XspI	CTAG	1 cut(s)	605
Zsp2I	ATGCAT	1 cut(s)	643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.