Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001964

Physical Location & Seq

Genomic Coordinates Reverse (-)

19438699 .. 19440141

Gene Structure 1443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g16040.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGATAACCTGGTATTCTCTGCTATTTTTGCTAGTACTAGTTGTACTAGTTGTTAGAAAGCATGATGTAGGCGAAGCAGCTGAGGACGACGTTAGTTTTGACCAAAACTACGTCGTCAGATATGGAAATGATCATTTCTTGAAACTAAACCAAGGAAGAGATGTTCAGCTTTCTTTGGACCAAACTACAGGATCTGGATTTAATTCCAAGAACGGATATGGTTCGGGTTTCTTTGAAATGAAGCTGAAATTGCCATCAAGCCATTCTCCTGGAGTTGTCACAACATTTTATTTAACTTCACATCCAGATAATAAGCCTGGAAACCATGACGAGCTAGACTTCGAGTTCTTGGGTACCGATGGGCCAAATTATACCTTACAAACAAATATTTTTGCAAATGACAATGGGGAGAGAGAGCAGAGGCTTCATCTTTGGTTTGATCCCACCGAGGATTTTCATAATTATGGAATCCTATGGAACTATCGCCAAGTAGTGTTTTTTGTGGATAACATCCCAATTAGAGTGTTCAAGAACAATACAATGTTGGGAGCAAGGTACCCTGAACTGAAGATGTTTGTGGAAGGAAGCATATGGAATGGAGAATCTTGGGCATCAAATGGCAGAAAAGTAAATTGGTCTCAGTCACCTTTCCAAGCACATTATCAAAAATTTAATATAAATGGATGCCAATTTGGAGCCAAATGCTCTTCTCAATCCCATAACTATTGGTGGAACGACAAAGATTATTTGGATCTGACCGCAGAGCAGCAAAGATCTTATGAGAATGTGACTCAGAAATATCTGTTTTATGATTATTGTTCTCTCAGAAGAGAAAAATTCAAGGAATGCCAAGTGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

287

Amino Acids

33.46

Weight (kDa)

5.85

Isoelectric Point (pI)

32.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25050 AT4G13080 AT4G13090
fragaria_vesca	FvH4_2g18760 FvH4_2g18761 FvH4_3g26030 FvH4_3g26030
malus_domestica	MD03G1093100.v1.1 MD05G1173300.v1.1 MD05G1173400.v1.1 MD05G1173600.v1.1
prunus_persica	Prupe.8G200900_v2.0.a1 Prupe.8G200900_v2.0.a1 Prupe.8G200900_v2.0.a1 Prupe.8G201000_v2.0.a1
pyrus_communis	pycom05g16020 pycom05g16030 pycom05g16040
rosa_chinensis	RchiOBHm_Chr5g0047321 RchiOBHm_Chr6g0284451 RchiOBHm_Chr6g0284461 RchiOBHm_Chr6g0284491
rosa_laevigata	RLG00000012742 RLG00000012743
rosa_roxburghii	Rroxscaffold_1G00034030 Rroxscaffold_7G00184670 Rroxscaffold_7G00184680 Rroxscaffold_7G00184690
rosa_rugosa	Rorug05G0235900 Rorug06G0163800
rosa_samantha	Rh5BG323400 Rh5CG350600 Rh5DG334400 Rh6AG276600 Rh6AG276900 Rh6BG276600 Rh6BG276700 Rh6CG278600 Rh6CG278700 Rh6CG278900 Rh6DG271000 Rh6DG271100 Rh6DG271300
rosa_wichuraiana	Rw6G023760 Rw6G023770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	353, 555
AccB1I	GGYRCC	2 cut(s)	353, 555
AciI	CCGC	1 cut(s)	759
AclWI	GGATC	3 cut(s)	199, 434, 759
AcsI	RAATTY	2 cut(s)	668, 836
AcuI	CTGAAG	1 cut(s)	587
AfaI	GTAC	4 cut(s)	36, 45, 355, 557
AgsI	TTSAA	4 cut(s)	142, 236, 529, 841
AhlI	ACTAGT	2 cut(s)	37, 46
AjnI	CCWGG	3 cut(s)	8, 268, 316
AjuI	GAANNNNNNNTTGG	2 cut(s)	616, 648
AloI	GAACNNNNNNTCC	2 cut(s)	147, 179
AluBI	AGCT	4 cut(s)	80, 169, 244, 334
AluI	AGCT	4 cut(s)	80, 169, 244, 334
Alw26I	GTCTC	1 cut(s)	642
AlwI	GGATC	3 cut(s)	199, 434, 759
AlwNI	CAGNNNCTG	1 cut(s)	194
AoxI	GGCC	1 cut(s)	362
ApeKI	GCWGC	2 cut(s)	77, 766
ApoI	RAATTY	2 cut(s)	668, 836
ArsI	GACNNNNNNTTYG	2 cut(s)	80, 112
Asp718I	GGTACC	2 cut(s)	353, 555
AspS9I	GGNCC	2 cut(s)	178, 362
AsuHPI	GGTGA	1 cut(s)	636
AvaII	GGWCC	1 cut(s)	178
BanI	GGYRCC	2 cut(s)	353, 555
BbvCI	CCTCAGC	1 cut(s)	81
BbvI	GCAGC	2 cut(s)	89, 778
BccI	CCATC	2 cut(s)	262, 353
BciT130I	CCWGG	3 cut(s)	10, 270, 318
BclI	TGATCA	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	642
BcuI	ACTAGT	2 cut(s)	37, 46
BfaI	CTAG	4 cut(s)	32, 38, 47, 335
BfmI	CTRYAG	1 cut(s)	186
BglII	AGATCT	1 cut(s)	773
BisI	GCNGC	2 cut(s)	78, 767
BlsI	GCNGC	2 cut(s)	79, 768
BmcAI	AGTACT	1 cut(s)	36
Bme1390I	CCNGG	3 cut(s)	10, 270, 318
Bme18I	GGWCC	1 cut(s)	178
BmgT120I	GGNCC	2 cut(s)	178, 362
BmiI	GGNNCC	3 cut(s)	355, 557, 697
BmrFI	CCNGG	3 cut(s)	10, 270, 318
BmsI	GCATC	2 cut(s)	620, 674
BpmI	CTGGAG	1 cut(s)	291
Bpu10I	CCTNAGC	1 cut(s)	81
BsaI	GGTCTC	1 cut(s)	642
BsaJI	CCNNGG	2 cut(s)	151, 447
BseBI	CCWGG	3 cut(s)	10, 270, 318
BseDI	CCNNGG	2 cut(s)	151, 447
BseGI	GGATG	3 cut(s)	301, 510, 689
BseMII	CTCAG	4 cut(s)	72, 653, 806, 838
BseXI	GCAGC	2 cut(s)	89, 778
BshFI	GGCC	1 cut(s)	364
BshNI	GGYRCC	2 cut(s)	353, 555
BsmAI	GTCTC	1 cut(s)	642
BsmI	GAATGC	1 cut(s)	851
BsnI	GGCC	1 cut(s)	364
Bso31I	GGTCTC	1 cut(s)	642
Bsp143I	GATC	5 cut(s)	130, 191, 439, 751, 773
BspACI	CCGC	1 cut(s)	759
BspANI	GGCC	1 cut(s)	364
BspCNI	CTCAG	4 cut(s)	73, 652, 805, 837
BspLI	GGNNCC	3 cut(s)	355, 557, 697
BspPI	GGATC	3 cut(s)	199, 434, 759
BspQI	GCTCTTC	1 cut(s)	712
BspT107I	GGYRCC	2 cut(s)	353, 555
BspTNI	GGTCTC	1 cut(s)	642
BssECI	CCNNGG	2 cut(s)	151, 447
BssMI	GATC	5 cut(s)	130, 191, 439, 751, 773
BssT1I	CCWWGG	1 cut(s)	151
Bst2UI	CCWGG	3 cut(s)	10, 270, 318
Bst6I	CTCTTC	3 cut(s)	151, 712, 823
BstDEI	CTNAG	4 cut(s)	81, 639, 792, 824
BstF5I	GGATG	3 cut(s)	301, 510, 689
BstKTI	GATC	5 cut(s)	133, 194, 442, 754, 776
BstMAI	GTCTC	1 cut(s)	642
BstMBI	GATC	5 cut(s)	130, 191, 439, 751, 773
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 250
BstNI	CCWGG	3 cut(s)	10, 270, 318
BstSCI	CCNGG	3 cut(s)	8, 268, 316
BstSFI	CTRYAG	1 cut(s)	186
BstV1I	GCAGC	2 cut(s)	89, 778
BstX2I	RGATCY	3 cut(s)	191, 751, 773
BstXI	CCANNNNNNTGG	1 cut(s)	269
BstYI	RGATCY	3 cut(s)	191, 751, 773
BsuRI	GGCC	1 cut(s)	364
BtsCI	GGATG	3 cut(s)	301, 510, 689
CaiI	CAGNNNCTG	1 cut(s)	194
Cfr13I	GGNCC	2 cut(s)	178, 362
CsiI	ACCWGGT	1 cut(s)	8
Csp6I	GTAC	4 cut(s)	35, 44, 354, 556
CviAII	CATG	2 cut(s)	62, 326
CviJI	RGCY	9 cut(s)	80, 169, 244, 261, 316, 334, 364, 424, 698
CviKI_1	RGCY	9 cut(s)	80, 169, 244, 261, 316, 334, 364, 424, 698
CviQI	GTAC	4 cut(s)	35, 44, 354, 556
DdeI	CTNAG	4 cut(s)	81, 639, 792, 824
DpnI	GATC	5 cut(s)	132, 193, 441, 753, 775
DpnII	GATC	5 cut(s)	130, 191, 439, 751, 773
Eam1104I	CTCTTC	3 cut(s)	151, 712, 823
EarI	CTCTTC	3 cut(s)	151, 712, 823
Eco130I	CCWWGG	1 cut(s)	151
Eco31I	GGTCTC	1 cut(s)	642
Eco47I	GGWCC	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	587
EcoRII	CCWGG	3 cut(s)	8, 268, 316
EcoT14I	CCWWGG	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	151
FaeI	CATG	2 cut(s)	65, 329
FatI	CATG	2 cut(s)	61, 325
FauNDI	CATATG	1 cut(s)	590
FbaI	TGATCA	1 cut(s)	130
Fnu4HI	GCNGC	2 cut(s)	78, 767
FokI	GGATG	3 cut(s)	288, 497, 696
Fsp4HI	GCNGC	2 cut(s)	78, 767
FspBI	CTAG	4 cut(s)	32, 38, 47, 335
GluI	GCNGC	2 cut(s)	78, 767
GsuI	CTGGAG	1 cut(s)	291
HaeIII	GGCC	1 cut(s)	364
Hin1II	CATG	2 cut(s)	65, 329
HinfI	GANTC	3 cut(s)	468, 602, 790
HphI	GGTGA	1 cut(s)	636
Hpy188I	TCNGA	4 cut(s)	119, 756, 795, 827
Hpy188III	TCNNGA	4 cut(s)	139, 195, 305, 529
Hpy99I	CGWCG	2 cut(s)	92, 116
HpyAV	CCTTC	1 cut(s)	575
HpyCH4IV	ACGT	2 cut(s)	90, 111
HpyCH4V	TGCA	1 cut(s)	395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 250
HpyF3I	CTNAG	4 cut(s)	81, 639, 792, 824
HpySE526I	ACGT	2 cut(s)	90, 111
Hsp92II	CATG	2 cut(s)	65, 329
KpnI	GGTACC	2 cut(s)	357, 559
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	5 cut(s)	130, 191, 439, 751, 773
LguI	GCTCTTC	1 cut(s)	712
LmnI	GCTCC	2 cut(s)	548, 695
LpnPI	CCDG	9 cut(s)	22, 174, 180, 255, 282, 303, 318, 330, 573
Lsp1109I	GCAGC	2 cut(s)	89, 778
LweI	GCATC	2 cut(s)	620, 674
MabI	ACCWGGT	1 cut(s)	8
MaeI	CTAG	4 cut(s)	32, 38, 47, 335
MaeII	ACGT	2 cut(s)	90, 111
MaeIII	GTNAC	3 cut(s)	277, 642, 787
MalI	GATC	5 cut(s)	132, 193, 441, 753, 775
MboI	GATC	5 cut(s)	130, 191, 439, 751, 773
MboII	GAAGA	4 cut(s)	168, 580, 699, 840
MflI	RGATCY	3 cut(s)	191, 751, 773
MluCI	AATT	9 cut(s)	202, 248, 367, 460, 516, 631, 668, 689, 836
MlyI	GAGTC	1 cut(s)	784
MnlI	CCTC	3 cut(s)	76, 414, 442
MseI	TTAA	3 cut(s)	201, 293, 672
MslI	CAYNNNNRTG	1 cut(s)	462
MspA1I	CMGCKG	1 cut(s)	80
MspR9I	CCNGG	3 cut(s)	10, 270, 318
Mva1269I	GAATGC	1 cut(s)	851
MvaI	CCWGG	3 cut(s)	10, 270, 318
MwoI	GCNNNNNNNGC	2 cut(s)	28, 250
NdeI	CATATG	1 cut(s)	590
NdeII	GATC	5 cut(s)	130, 191, 439, 751, 773
NlaIII	CATG	2 cut(s)	65, 329
NlaIV	GGNNCC	3 cut(s)	355, 557, 697
NmuCI	GTSAC	3 cut(s)	277, 642, 787
PciSI	GCTCTTC	1 cut(s)	712
PctI	GAATGC	1 cut(s)	851
PfeI	GAWTC	2 cut(s)	468, 602
PfoI	TCCNGGA	1 cut(s)	268
PkrI	GCNGC	2 cut(s)	79, 768
PleI	GAGTC	1 cut(s)	784
PpsI	GAGTC	1 cut(s)	784
Psp6I	CCWGG	3 cut(s)	8, 268, 316
PspGI	CCWGG	3 cut(s)	8, 268, 316
PspN4I	GGNNCC	3 cut(s)	355, 557, 697
PspPI	GGNCC	2 cut(s)	178, 362
PstNI	CAGNNNCTG	1 cut(s)	194
PsuI	RGATCY	3 cut(s)	191, 751, 773
PvuII	CAGCTG	1 cut(s)	80
RsaI	GTAC	4 cut(s)	36, 45, 355, 557
RsaNI	GTAC	4 cut(s)	35, 44, 354, 556
RseI	CAYNNNNRTG	1 cut(s)	462
SapI	GCTCTTC	1 cut(s)	712
SaqAI	TTAA	3 cut(s)	201, 293, 672
SatI	GCNGC	2 cut(s)	78, 767
Sau3AI	GATC	5 cut(s)	130, 191, 439, 751, 773
Sau96I	GGNCC	2 cut(s)	178, 362
ScaI	AGTACT	1 cut(s)	36
SchI	GAGTC	1 cut(s)	784
ScrFI	CCNGG	3 cut(s)	10, 270, 318
SexAI	ACCWGGT	1 cut(s)	8
SfaNI	GCATC	2 cut(s)	620, 674
SfcI	CTRYAG	1 cut(s)	186
SinI	GGWCC	1 cut(s)	178
SmiMI	CAYNNNNRTG	1 cut(s)	462
SpeI	ACTAGT	2 cut(s)	37, 46
Sse9I	AATT	9 cut(s)	202, 248, 367, 460, 516, 631, 668, 689, 836
SsiI	CCGC	1 cut(s)	759
SspI	AATATT	1 cut(s)	388
SspMI	CTAG	4 cut(s)	32, 38, 47, 335
StyD4I	CCNGG	3 cut(s)	8, 268, 316
StyI	CCWWGG	1 cut(s)	151
TaiI	ACGT	2 cut(s)	93, 114
TaqI	TCGA	1 cut(s)	342
TasI	AATT	9 cut(s)	202, 248, 367, 460, 516, 631, 668, 689, 836
TatI	WGTACW	2 cut(s)	34, 43
TfiI	GAWTC	2 cut(s)	468, 602
Tru1I	TTAA	3 cut(s)	201, 293, 672
Tru9I	TTAA	3 cut(s)	201, 293, 672
TseFI	GTSAC	3 cut(s)	277, 642, 787
TseI	GCWGC	2 cut(s)	77, 766
Tsp45I	GTSAC	3 cut(s)	277, 642, 787
TspDTI	ATGAA	3 cut(s)	254, 416, 446
TspGWI	ACGGA	1 cut(s)	228
VpaK11BI	GGWCC	1 cut(s)	178
XapI	RAATTY	2 cut(s)	668, 836
XspI	CTAG	4 cut(s)	32, 38, 47, 335
ZrmI	AGTACT	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.