Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001964

Physical Location & Seq

Genomic Coordinates Reverse (-)

30206753 .. 30209041

Gene Structure 2289 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1173400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGGAGGGCATGGCCAGGATCCAAAGCAGACAATATCGTGCTACGACGGAACCGGTCTGGGATGTGACATATTATGGCTGCTCATTATATTTGCAGCTGAAAATGATGACATTGCTTTCGATAAAAAATATGAGTTCATATGGGGAAATGATCACATCTTGTCTCTGAATCAAGGGAGAGAACTCCAGCTTACGTTGGATAATCGTTCCGGGTGTAAATTTGCTTCGTACCTAAACTACAGTTCTGGGTTCTTCCATATGAGGATGAAGATACCAGGGAATAATAATACTGCAGGAGTTGTCACAAGTTTTTATCTAATGTCAAAGGCTAGTGCTAGTCAGCATGATGAACTGGACTTTGAGTTCTTGGGTAACATAGAAGGCCAGCAAATCACATTGCAAACAAATGTGTTTGTAAATGGTGTGGGGGACAGAGAGCAAAGGATTAACCTATGGTTTGACCCAGCAGGAAATTTCCACGATTACAAAATTATTTGGAACCCTCATCAAGTTGTATTTTTCATCGATGACACCCCAATTAGGGTTTTCAAAAATTACACAAACTATGGAGTTCCGTACCCGACGCAGCCAATGCGAATCGAAGCAGCCTTGTGGACTGCAGATTGGGCAACTTTCGGGCATAAGATAAATTGGACTTACGCACCATTTGTAGCTCACTGCCAAGGATTTGACATAAGTGGGTGCTCAGCACAGAACGCCGATGTTGAAGAATGTTATAGCTCCAATCAGTGGTGGAACAACATGGAGTATTGGAACCTAAATTCTACCCAACAGAAGGCATATGAGAATGTGAGAAAGAAATACATGAACTACGACTACTGTGATGACAAGGCTAAGTACCCTTCCGGGCTTCCCCGAGAGTGCGTTATTCAGAAAAATGGTCGGCTACATAATGGTCAGAAATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009832 GO:0009987 GO:0010228 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0022414 GO:0030243 GO:0032501 GO:0032502 GO:0042546 GO:0043170 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0046527 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051273 GO:0061458 GO:0071554 GO:0071669 GO:0071704 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

310

Amino Acids

35.65

Weight (kDa)

5.57

Isoelectric Point (pI)

34.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	41 - 219	3.1e-55	Glycosyl hydrolases family 16
XET_C	PF06955	247 - 295	4.7e-17	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25050 AT4G13080 AT4G13090
fragaria_vesca	FvH4_2g18760 FvH4_2g18761 FvH4_3g26030 FvH4_3g26030
malus_domestica	MD03G1093100.v1.1 MD05G1173300.v1.1 MD05G1173400.v1.1 MD05G1173600.v1.1
prunus_persica	Prupe.8G200900_v2.0.a1 Prupe.8G200900_v2.0.a1 Prupe.8G200900_v2.0.a1 Prupe.8G201000_v2.0.a1
pyrus_communis	pycom05g16020 pycom05g16030 pycom05g16040
rosa_chinensis	RchiOBHm_Chr5g0047321 RchiOBHm_Chr6g0284451 RchiOBHm_Chr6g0284461 RchiOBHm_Chr6g0284491
rosa_laevigata	RLG00000012742 RLG00000012743
rosa_roxburghii	Rroxscaffold_1G00034030 Rroxscaffold_7G00184670 Rroxscaffold_7G00184680 Rroxscaffold_7G00184690
rosa_rugosa	Rorug05G0235900 Rorug06G0163800
rosa_samantha	Rh5BG323400 Rh5CG350600 Rh5DG334400 Rh6AG276600 Rh6AG276900 Rh6BG276600 Rh6BG276700 Rh6CG278600 Rh6CG278700 Rh6CG278900 Rh6DG271000 Rh6DG271100 Rh6DG271300
rosa_wichuraiana	Rw6G023760 Rw6G023770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	750
AclWI	GGATC	2 cut(s)	14, 27
AcoI	YGGCCR	1 cut(s)	13
AcsI	RAATTY	3 cut(s)	218, 472, 781
AfaI	GTAC	3 cut(s)	230, 578, 860
AfiI	CCNNNNNNNGG	4 cut(s)	540, 541, 750, 796
AgeI	ACCGGT	1 cut(s)	53
AgsI	TTSAA	2 cut(s)	550, 728
AjnI	CCWGG	2 cut(s)	15, 274
AloI	GAACNNNNNNTCC	2 cut(s)	347, 379
AluBI	AGCT	4 cut(s)	98, 190, 674, 741
AluI	AGCT	4 cut(s)	98, 190, 674, 741
Alw21I	GWGCWC	1 cut(s)	707
Alw26I	GTCTC	1 cut(s)	168
AlwI	GGATC	2 cut(s)	14, 27
Ama87I	CYCGRG	1 cut(s)	876
AoxI	GGCC	2 cut(s)	13, 382
ApeKI	GCWGC	4 cut(s)	79, 95, 586, 605
ApoI	RAATTY	3 cut(s)	218, 472, 781
ArsI	GACNNNNNNTTYG	2 cut(s)	101, 133
AsiGI	ACCGGT	1 cut(s)	53
AsuC2I	CCSGG	2 cut(s)	211, 868
AvaI	CYCGRG	1 cut(s)	876
BalI	TGGCCA	1 cut(s)	15
BamHI	GGATCC	1 cut(s)	19
BarI	GAAGNNNNNNTAC	2 cut(s)	208, 240
Bbv12I	GWGCWC	1 cut(s)	707
BbvI	GCAGC	4 cut(s)	66, 107, 598, 617
BciT130I	CCWGG	2 cut(s)	17, 276
BclI	TGATCA	1 cut(s)	151
BcnI	CCSGG	2 cut(s)	211, 868
BcoDI	GTCTC	1 cut(s)	168
BfaI	CTAG	2 cut(s)	330, 336
BfmI	CTRYAG	3 cut(s)	238, 291, 618
BisI	GCNGC	4 cut(s)	80, 96, 587, 606
BlpI	GCTNAGC	1 cut(s)	706
BlsI	GCNGC	4 cut(s)	81, 97, 588, 607
Bme1390I	CCNGG	4 cut(s)	17, 211, 276, 868
BmeT110I	CYCGRG	1 cut(s)	876
BmiI	GGNNCC	4 cut(s)	21, 52, 500, 776
BmrFI	CCNGG	4 cut(s)	17, 211, 276, 868
BpmI	CTGGAG	1 cut(s)	170
Bpu1102I	GCTNAGC	1 cut(s)	706
BpuMI	CCSGG	2 cut(s)	211, 868
Bsa29I	ATCGAT	1 cut(s)	525
BsaJI	CCNNGG	2 cut(s)	275, 682
BsaWI	WCCGGW	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	4 cut(s)	540, 541, 750, 796
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	357
Bse3DI	GCAATG	2 cut(s)	111, 395
BseBI	CCWGG	2 cut(s)	17, 276
BseCI	ATCGAT	1 cut(s)	525
BseDI	CCNNGG	2 cut(s)	275, 682
BseGI	GGATG	2 cut(s)	68, 270
BseLI	CCNNNNNNNGG	4 cut(s)	540, 541, 750, 796
BseMI	GCAATG	2 cut(s)	111, 395
BseMII	CTCAG	1 cut(s)	720
BseNI	ACTGG	1 cut(s)	357
BseXI	GCAGC	4 cut(s)	66, 107, 598, 617
BseYI	CCCAGC	1 cut(s)	463
BshFI	GGCC	2 cut(s)	15, 384
BshTI	ACCGGT	1 cut(s)	53
BshVI	ATCGAT	1 cut(s)	525
BsiHKAI	GWGCWC	1 cut(s)	707
BsiHKCI	CYCGRG	1 cut(s)	876
BsiSI	CCGG	3 cut(s)	54, 210, 867
BslFI	GGGAC	1 cut(s)	443
BslI	CCNNNNNNNGG	4 cut(s)	540, 541, 750, 796
BsmAI	GTCTC	1 cut(s)	168
BsmFI	GGGAC	1 cut(s)	443
BsnI	GGCC	2 cut(s)	15, 384
BsoBI	CYCGRG	1 cut(s)	876
Bsp1286I	GDGCHC	1 cut(s)	707
Bsp143I	GATC	2 cut(s)	19, 151
Bsp1720I	GCTNAGC	1 cut(s)	706
BspANI	GGCC	2 cut(s)	15, 384
BspCNI	CTCAG	1 cut(s)	719
BspDI	ATCGAT	1 cut(s)	525
BspLI	GGNNCC	4 cut(s)	21, 52, 500, 776
BspMAI	CTGCAG	2 cut(s)	295, 622
BspPI	GGATC	2 cut(s)	14, 27
BsrDI	GCAATG	2 cut(s)	111, 395
BsrFI	RCCGGY	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	357
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	2 cut(s)	275, 682
BssMI	GATC	2 cut(s)	19, 151
BssT1I	CCWWGG	1 cut(s)	682
Bst2UI	CCWGG	2 cut(s)	17, 276
Bst4CI	ACNGT	2 cut(s)	242, 842
BstAPI	GCANNNNNTGC	1 cut(s)	592
BstC8I	GCNNGC	1 cut(s)	386
BstDEI	CTNAG	2 cut(s)	706, 855
BstF5I	GGATG	2 cut(s)	68, 270
BstKTI	GATC	2 cut(s)	22, 154
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	2 cut(s)	19, 151
BstMWI	GCNNNNNNNGC	3 cut(s)	592, 626, 716
BstNI	CCWGG	2 cut(s)	17, 276
BstSCI	CCNGG	4 cut(s)	15, 209, 274, 866
BstSFI	CTRYAG	3 cut(s)	238, 291, 618
BstV1I	GCAGC	4 cut(s)	66, 107, 598, 617
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
Bsu15I	ATCGAT	1 cut(s)	525
BsuRI	GGCC	2 cut(s)	15, 384
BsuTUI	ATCGAT	1 cut(s)	525
BtsCI	GGATG	2 cut(s)	68, 270
BtsI	GCAGTG	1 cut(s)	676
BtsIMutI	CAGTG	2 cut(s)	676, 755
Cac8I	GCNNGC	1 cut(s)	386
Cfr10I	RCCGGY	1 cut(s)	53
ClaI	ATCGAT	1 cut(s)	525
CseI	GACGC	1 cut(s)	592
Csp6I	GTAC	3 cut(s)	229, 577, 859
CspAI	ACCGGT	1 cut(s)	53
CviAII	CATG	4 cut(s)	11, 344, 763, 826
CviQI	GTAC	3 cut(s)	229, 577, 859
DdeI	CTNAG	2 cut(s)	706, 855
DpnI	GATC	2 cut(s)	21, 153
DpnII	GATC	2 cut(s)	19, 151
EaeI	YGGCCR	1 cut(s)	13
Eco130I	CCWWGG	1 cut(s)	682
Eco88I	CYCGRG	1 cut(s)	876
EcoRII	CCWGG	2 cut(s)	15, 274
EcoT14I	CCWWGG	1 cut(s)	682
ErhI	CCWWGG	1 cut(s)	682
FaeI	CATG	4 cut(s)	14, 347, 766, 829
FaqI	GGGAC	1 cut(s)	443
FatI	CATG	4 cut(s)	10, 343, 762, 825
FauNDI	CATATG	3 cut(s)	140, 258, 802
FbaI	TGATCA	1 cut(s)	151
Fnu4HI	GCNGC	4 cut(s)	80, 96, 587, 606
FokI	GGATG	2 cut(s)	75, 277
Fsp4HI	GCNGC	4 cut(s)	80, 96, 587, 606
FspBI	CTAG	2 cut(s)	330, 336
GluI	GCNGC	4 cut(s)	80, 96, 587, 606
GsaI	CCCAGC	1 cut(s)	467
GsuI	CTGGAG	1 cut(s)	170
HaeIII	GGCC	2 cut(s)	15, 384
HapII	CCGG	3 cut(s)	54, 210, 867
HgaI	GACGC	1 cut(s)	592
Hin1II	CATG	4 cut(s)	14, 347, 766, 829
HinfI	GANTC	2 cut(s)	169, 597
HpaII	CCGG	3 cut(s)	54, 210, 867
Hpy166II	GTNNAC	1 cut(s)	615
Hpy188I	TCNGA	3 cut(s)	168, 894, 921
Hpy8I	GTNNAC	1 cut(s)	615
Hpy99I	CGWCG	2 cut(s)	50, 586
HpyAV	CCTTC	3 cut(s)	374, 790, 873
HpyCH4III	ACNGT	2 cut(s)	242, 842
HpyCH4IV	ACGT	1 cut(s)	194
HpyCH4V	TGCA	4 cut(s)	95, 293, 400, 620
HpyF10VI	GCNNNNNNNGC	3 cut(s)	592, 626, 716
HpyF3I	CTNAG	2 cut(s)	706, 855
HpySE526I	ACGT	1 cut(s)	194
Hsp92II	CATG	4 cut(s)	14, 347, 766, 829
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	2 cut(s)	19, 151
LmnI	GCTCC	1 cut(s)	746
Lsp1109I	GCAGC	4 cut(s)	66, 107, 598, 617
MaeI	CTAG	2 cut(s)	330, 336
MaeII	ACGT	1 cut(s)	194
MaeIII	GTNAC	3 cut(s)	65, 301, 371
MalI	GATC	2 cut(s)	21, 153
MboI	GATC	2 cut(s)	19, 151
MboII	GAAGA	3 cut(s)	244, 280, 740
MflI	RGATCY	1 cut(s)	19
MhlI	GDGCHC	1 cut(s)	707
MlsI	TGGCCA	1 cut(s)	15
MluCI	AATT	7 cut(s)	218, 472, 489, 537, 553, 649, 781
MluNI	TGGCCA	1 cut(s)	15
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	2 cut(s)	255, 513
Mox20I	TGGCCA	1 cut(s)	15
MscI	TGGCCA	1 cut(s)	15
MseI	TTAA	1 cut(s)	447
Msp20I	TGGCCA	1 cut(s)	15
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	3 cut(s)	54, 210, 867
MspR9I	CCNGG	4 cut(s)	17, 211, 276, 868
MvaI	CCWGG	2 cut(s)	17, 276
MwoI	GCNNNNNNNGC	3 cut(s)	592, 626, 716
NciI	CCSGG	2 cut(s)	211, 868
NdeI	CATATG	3 cut(s)	140, 258, 802
NdeII	GATC	2 cut(s)	19, 151
NlaIII	CATG	4 cut(s)	14, 347, 766, 829
NlaIV	GGNNCC	4 cut(s)	21, 52, 500, 776
NmuCI	GTSAC	2 cut(s)	65, 301
PfeI	GAWTC	2 cut(s)	169, 597
PflMI	CCANNNNNTGG	1 cut(s)	750
PinAI	ACCGGT	1 cut(s)	53
PkrI	GCNGC	4 cut(s)	81, 97, 588, 607
Psp6I	CCWGG	2 cut(s)	15, 274
PspFI	CCCAGC	1 cut(s)	463
PspGI	CCWGG	2 cut(s)	15, 274
PspN4I	GGNNCC	4 cut(s)	21, 52, 500, 776
PsrI	GAACNNNNNNTAC	2 cut(s)	821, 853
PstI	CTGCAG	2 cut(s)	295, 622
PsuI	RGATCY	1 cut(s)	19
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	3 cut(s)	230, 578, 860
RsaNI	GTAC	3 cut(s)	229, 577, 859
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	4 cut(s)	80, 96, 587, 606
Sau3AI	GATC	2 cut(s)	19, 151
ScrFI	CCNGG	4 cut(s)	17, 211, 276, 868
SduI	GDGCHC	1 cut(s)	707
SetI	ASST	8 cut(s)	100, 192, 197, 234, 453, 676, 743, 780
SfcI	CTRYAG	3 cut(s)	238, 291, 618
Sse9I	AATT	7 cut(s)	218, 472, 489, 537, 553, 649, 781
SspI	AATATT	1 cut(s)	926
SspMI	CTAG	2 cut(s)	330, 336
StyD4I	CCNGG	4 cut(s)	15, 209, 274, 866
StyI	CCWWGG	1 cut(s)	682
TaaI	ACNGT	2 cut(s)	242, 842
TaiI	ACGT	1 cut(s)	197
TaqI	TCGA	3 cut(s)	120, 525, 600
TasI	AATT	7 cut(s)	218, 472, 489, 537, 553, 649, 781
TfiI	GAWTC	2 cut(s)	169, 597
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	2 cut(s)	683, 755
TseFI	GTSAC	2 cut(s)	65, 301
TseI	GCWGC	4 cut(s)	79, 95, 586, 605
Tsp45I	GTSAC	2 cut(s)	65, 301
TspDTI	ATGAA	5 cut(s)	127, 281, 363, 511, 842
TspGWI	ACGGA	2 cut(s)	63, 564
TspRI	CASTG	2 cut(s)	683, 755
Van91I	CCANNNNNTGG	1 cut(s)	750
XapI	RAATTY	3 cut(s)	218, 472, 781
XspI	CTAG	2 cut(s)	330, 336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.