Prupe.8G200900_v2.0.a1

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
18991364 .. 18994471
3108 bp
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UTR
Exon/CDS
Intron
Prupe.8G200900.3

Sequence Viewer

Length: 864 bp
ATGGCTTTCTCAGTGGTTCGTTTATTTCTGTTTCTTCTCCTTATTGGCGGTGGGGTGCTTGCAAGAGAAACCAACCTTCTTGACGGTAACTTTTATCATAACTATAGAACGCTCACAACGGATTCTTCTCATTTCCGGTCTTCAAATAATGGAAGAGAAGTCCGGCTTTCTATGGATAATTCTTCGGGGGCTTCGTTTGTATCCAAGCAATGGTTTGGTTCTGGGTTCTTTCATATGAAGATCAAATTACCACGAGGGAATTCTGCTGGTGTCGTCACAACTTTTTATCTAACTTCAGGTGACGGTGACCGAGTAAATGACAAAGCTCATGATGAGCTGGACTTTGAGTTCTTGGGTAACATAAAAGGAGAGCCAATCCTACTGCAGACAAATGTTTTTGCAAATGGCACGGCCGGTAGAGAACAAAGAATTACTCTTTGGTTTGACCCCACAACGGAGTATCATGACTACAAAATTCTTTGGAACCAGAATCAAATTGTATTTTATGTCGACGACATCCCAATTAGGGTATTTAAGAACCTCACAGAATCTGGGGTTCCCTTCCCGTCACAACCATTGCAAATTCAAGCAAGCCTTTGGCATGCAAAATGGGCAAGTCAGAATGAGACGGATTGGAGTTATGCACCATTTAAAGCTCACTACCAAGGATTTGACATAAGTGGCTGCCCCTGCGCAACAAAACAATGCATGAACGAATGTTATGGGCAGAATTATTGGTGGAACGACATAAGGGAATTAAACTCAGACCAACGACGGGCATATGAGGATGTGAGAAGGAGACATATGCACTATGACTATTGTGCCAGTCATACACCTGCCCCAGAGTGCAGTTTTAATAGCTAG

Protein Analysis

288

Amino Acids

33.06

Weight (kDa)

6.19

Isoelectric Point (pI)

49.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 844
Acc16I TGCGCA 1 cut(s) 694
Acc36I ACCTGC 1 cut(s) 844
AccB7I CCANNNNNTGG 1 cut(s) 210
AccI GTMKAC 1 cut(s) 510
AciI CCGC 1 cut(s) 48
AcoI YGGCCR 1 cut(s) 411
AcsI RAATTY 3 cut(s) 259, 474, 582
AcuI CTGAAG 1 cut(s) 279
AfiI CCNNNNNNNGG 4 cut(s) 210, 454, 526, 775
AgsI TTSAA 2 cut(s) 144, 587
AjuI GAANNNNNNNTTGG 2 cut(s) 421, 453
AloI GAACNNNNNNTCC 2 cut(s) 332, 364
AluBI AGCT 4 cut(s) 326, 337, 656, 861
AluI AGCT 4 cut(s) 326, 337, 656, 861
Alw26I GTCTC 2 cut(s) 620, 793
AlwNI CAGNNNCTG 1 cut(s) 551
AoxI GGCC 1 cut(s) 411
ApeKI GCWGC 1 cut(s) 684
ApoI RAATTY 3 cut(s) 259, 474, 582
AspLEI GCGC 1 cut(s) 695
AsuHPI GGTGA 2 cut(s) 311, 317
BauI CACGAG 1 cut(s) 252
BbsI GAAGAC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 671
BceAI ACGGC 1 cut(s) 426
BciVI GTATCC 1 cut(s) 211
BcoDI GTCTC 2 cut(s) 620, 793
BfaI CTAG 1 cut(s) 862
BfmI CTRYAG 2 cut(s) 103, 383
BfuAI ACCTGC 1 cut(s) 844
BfuI GTATCC 1 cut(s) 211
BisI GCNGC 1 cut(s) 685
BlsI GCNGC 1 cut(s) 686
BmiI GGNNCC 2 cut(s) 485, 558
BpiI GAAGAC 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 664
BsaWI WCCGGW 1 cut(s) 135
Bsc4I CCNNNNNNNGG 4 cut(s) 210, 454, 526, 775
Bse118I RCCGGY 1 cut(s) 413
Bse1I ACTGG 1 cut(s) 825
Bse3DI GCAATG 2 cut(s) 215, 575
BseDI CCNNGG 1 cut(s) 664
BseGI GGATG 2 cut(s) 516, 793
BseLI CCNNNNNNNGG 4 cut(s) 210, 454, 526, 775
BseMI GCAATG 2 cut(s) 215, 575
BseMII CTCAG 2 cut(s) 24, 777
BseNI ACTGG 1 cut(s) 825
BseX3I CGGCCG 1 cut(s) 411
BseXI GCAGC 1 cut(s) 671
Bsh1285I CGRYCG 1 cut(s) 414
BshFI GGCC 1 cut(s) 413
BsiEI CGRYCG 1 cut(s) 414
BsiSI CCGG 3 cut(s) 136, 163, 414
BslI CCNNNNNNNGG 4 cut(s) 210, 454, 526, 775
BsmAI GTCTC 2 cut(s) 620, 793
BsmBI CGTCTC 1 cut(s) 620
BsnI GGCC 1 cut(s) 413
Bsp143I GATC 1 cut(s) 240
BspACI CCGC 1 cut(s) 48
BspANI GGCC 1 cut(s) 413
BspCNI CTCAG 2 cut(s) 23, 776
BspHI TCATGA 2 cut(s) 328, 463
BspLI GGNNCC 2 cut(s) 485, 558
BspMAI CTGCAG 1 cut(s) 387
BspMI ACCTGC 1 cut(s) 844
BsrDI GCAATG 2 cut(s) 215, 575
BsrFI RCCGGY 1 cut(s) 413
BsrI ACTGG 1 cut(s) 825
BssAI RCCGGY 1 cut(s) 413
BssECI CCNNGG 1 cut(s) 664
BssMI GATC 1 cut(s) 240
BssSI CACGAG 1 cut(s) 252
BssT1I CCWWGG 1 cut(s) 664
Bst2BI CACGAG 1 cut(s) 252
Bst4CI ACNGT 2 cut(s) 86, 305
Bst6I CTCTTC 1 cut(s) 148
BstC8I GCNNGC 3 cut(s) 60, 592, 603
BstDEI CTNAG 2 cut(s) 10, 763
BstEII GGTNACC 1 cut(s) 305
BstF5I GGATG 2 cut(s) 516, 793
BstHHI GCGC 1 cut(s) 695
BstKTI GATC 1 cut(s) 243
BstMAI GTCTC 2 cut(s) 620, 793
BstMBI GATC 1 cut(s) 240
BstMCI CGRYCG 1 cut(s) 414
BstMWI GCNNNNNNNGC 2 cut(s) 611, 690
BstNSI RCATGY 1 cut(s) 605
BstPI GGTNACC 1 cut(s) 305
BstSFI CTRYAG 2 cut(s) 103, 383
BstV1I GCAGC 1 cut(s) 671
BstV2I GAAGAC 1 cut(s) 132
BstZI CGGCCG 1 cut(s) 411
BsuI GTATCC 1 cut(s) 211
BsuRI GGCC 1 cut(s) 413
BtsCI GGATG 2 cut(s) 516, 793
BtsIMutI CAGTG 1 cut(s) 18
BveI ACCTGC 1 cut(s) 844
Cac8I GCNNGC 3 cut(s) 60, 592, 603
CaiI CAGNNNCTG 1 cut(s) 551
CciI TCATGA 2 cut(s) 328, 463
CfoI GCGC 1 cut(s) 695
Cfr10I RCCGGY 1 cut(s) 413
CviAII CATG 4 cut(s) 329, 464, 602, 709
DdeI CTNAG 2 cut(s) 10, 763
DpnI GATC 1 cut(s) 242
DpnII GATC 1 cut(s) 240
DraI TTTAAA 1 cut(s) 652
EaeI YGGCCR 1 cut(s) 411
EagI CGGCCG 1 cut(s) 411
Eam1104I CTCTTC 1 cut(s) 148
EarI CTCTTC 1 cut(s) 148
EclXI CGGCCG 1 cut(s) 411
Eco130I CCWWGG 1 cut(s) 664
Eco52I CGGCCG 1 cut(s) 411
Eco57I CTGAAG 1 cut(s) 279
Eco91I GGTNACC 1 cut(s) 305
EcoO65I GGTNACC 1 cut(s) 305
EcoRI GAATTC 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 664
EcoT22I ATGCAT 1 cut(s) 710
ErhI CCWWGG 1 cut(s) 664
Esp3I CGTCTC 1 cut(s) 620
FaeI CATG 4 cut(s) 332, 467, 605, 712
FalI AAGNNNNNCTT 4 cut(s) 150, 182, 579, 611
FatI CATG 4 cut(s) 328, 463, 601, 708
FauNDI CATATG 3 cut(s) 234, 781, 804
FblI GTMKAC 1 cut(s) 510
Fnu4HI GCNGC 1 cut(s) 685
FokI GGATG 2 cut(s) 503, 800
Fsp4HI GCNGC 1 cut(s) 685
FspBI CTAG 1 cut(s) 862
FspI TGCGCA 1 cut(s) 694
GlaI GCGC 1 cut(s) 694
GluI GCNGC 1 cut(s) 685
HaeIII GGCC 1 cut(s) 413
HapII CCGG 3 cut(s) 136, 163, 414
HhaI GCGC 1 cut(s) 695
Hin1II CATG 4 cut(s) 332, 467, 605, 712
Hin6I GCGC 1 cut(s) 693
HinP1I GCGC 1 cut(s) 693
HincII GTYRAC 1 cut(s) 511
HindII GTYRAC 1 cut(s) 511
HinfI GANTC 3 cut(s) 122, 490, 548
HpaII CCGG 3 cut(s) 136, 163, 414
HphI GGTGA 2 cut(s) 311, 317
Hpy166II GTNNAC 1 cut(s) 511
Hpy188I TCNGA 2 cut(s) 621, 766
Hpy188III TCNNGA 3 cut(s) 80, 329, 464
Hpy8I GTNNAC 1 cut(s) 511
Hpy99I CGWCG 2 cut(s) 515, 777
HpyAV CCTTC 3 cut(s) 86, 571, 789
HpyCH4III ACNGT 2 cut(s) 86, 305
HpyCH4V TGCA 9 cut(s) 62, 385, 401, 580, 605, 644, 708, 808, 849
HpyF10VI GCNNNNNNNGC 2 cut(s) 611, 690
HpyF3I CTNAG 2 cut(s) 10, 763
Hsp92II CATG 4 cut(s) 332, 467, 605, 712
HspAI GCGC 1 cut(s) 693
Kzo9I GATC 1 cut(s) 240
Lsp1109I GCAGC 1 cut(s) 671
MaeI CTAG 1 cut(s) 862
MaeIII GTNAC 6 cut(s) 86, 274, 299, 305, 356, 567
MalI GATC 1 cut(s) 242
MboI GATC 1 cut(s) 240
MboII GAAGA 6 cut(s) 26, 117, 132, 165, 174, 250
MnlI CCTC 3 cut(s) 248, 551, 778
Mph1103I ATGCAT 1 cut(s) 710
MseI TTAA 4 cut(s) 534, 651, 758, 855
MspI CCGG 3 cut(s) 136, 163, 414
MwoI GCNNNNNNNGC 2 cut(s) 611, 690
NdeI CATATG 3 cut(s) 234, 781, 804
NdeII GATC 1 cut(s) 240
NlaIII CATG 4 cut(s) 332, 467, 605, 712
NlaIV GGNNCC 2 cut(s) 485, 558
NmuCI GTSAC 4 cut(s) 274, 299, 305, 567
NsbI TGCGCA 1 cut(s) 694
NsiI ATGCAT 1 cut(s) 710
NspI RCATGY 1 cut(s) 605
PaeI GCATGC 1 cut(s) 605
PagI TCATGA 2 cut(s) 328, 463
PaqCI CACCTGC 1 cut(s) 844
PcsI WCGNNNNNNNCGW 1 cut(s) 191
PfeI GAWTC 3 cut(s) 122, 490, 548
PflMI CCANNNNNTGG 1 cut(s) 210
PkrI GCNGC 1 cut(s) 686
PspEI GGTNACC 1 cut(s) 305
PspN4I GGNNCC 2 cut(s) 485, 558
PstI CTGCAG 1 cut(s) 387
PstNI CAGNNNCTG 1 cut(s) 551
SalI GTCGAC 1 cut(s) 509
SaqAI TTAA 4 cut(s) 534, 651, 758, 855
SatI GCNGC 1 cut(s) 685
Sau3AI GATC 1 cut(s) 240
SetI ASST 8 cut(s) 78, 301, 328, 339, 543, 658, 838, 863
SfcI CTRYAG 2 cut(s) 103, 383
SphI GCATGC 1 cut(s) 605
SsiI CCGC 1 cut(s) 48
SspMI CTAG 1 cut(s) 862
StyI CCWWGG 1 cut(s) 664
TaaI ACNGT 2 cut(s) 86, 305
TaqI TCGA 1 cut(s) 510
TaqII GACCGA 1 cut(s) 324
TfiI GAWTC 3 cut(s) 122, 490, 548
Tru1I TTAA 4 cut(s) 534, 651, 758, 855
Tru9I TTAA 4 cut(s) 534, 651, 758, 855
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 4 cut(s) 274, 299, 305, 567
TseI GCWGC 1 cut(s) 684
Tsp45I GTSAC 4 cut(s) 274, 299, 305, 567
TspDTI ATGAA 3 cut(s) 221, 251, 725
TspGWI ACGGA 3 cut(s) 134, 470, 644
TspRI CASTG 1 cut(s) 18
Van91I CCANNNNNTGG 1 cut(s) 210
XapI RAATTY 3 cut(s) 259, 474, 582
XceI RCATGY 1 cut(s) 605
XmiI GTMKAC 1 cut(s) 510
XspI CTAG 1 cut(s) 862
Zsp2I ATGCAT 1 cut(s) 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.