Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001964

Physical Location & Seq

Genomic Coordinates Reverse (-)

30196005 .. 30199206

Gene Structure 3202 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1173300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGATTTTCCAGTGTTGGGTTTCCTTGTGTTAATTCTCCAACTTGTTGGTGGGATGCTTGCACGTGACAATATTTTCTATGATGAGAACTATGAAGTCAACTGGGGATTTGATCATTTCAAATCTTTGTATCGAGGGAGAGAAGTCGAGCTTTCCTTGGATAATAGTTCGGGCGCAGGGTTTATATCCAAGCTAAGCTATGGTTCTGGGTTCTTTCACATGAGGATTAGATTACCAGAAGCCTGGAATACTGCTGATGTTTGCACAACTTTTTATCTAACTTCAGGCGATGAACCTCATCAGGATGAGCTGGACTTTGAGCTTTTGGGAAGCAAACCAGGGGGGGAAAAATTCTTGCTGACAAATGTTTTTATAGATGGTCAGGGCGGTAGAGAGGAAACCATGACATTTTGGTTTGACCCCACTACTGAGTATCATGACTACCAAATTCTTTGGAACCACCATCAAATTGTATTTTATGTTGACAAATTCCCAATTAGGATTTTCAAGAACAACAAAAAATTTGGAGTTCCCTACATATCAAAACCAATGAAAATACAAGCAAGCTTGTGGAACGCAGAGTGGGCAACTCGTGATGCAGATATAGATTGGAGATATGCACCTTTTAAAGCTCACTATGAAGGATTTGACGTAAACGGCTGCACACCACAGAACTCCATCAAAGACTGTTATGGGCACAGATATTGGTGGAACAGTAGGAAGCATTGGGAACTTGACTCCAACGAACGACAAAAATACGAGGATATTAGAAGATTTTTGGTGTATGACTACTGTTCAGCTGGTTTTCCAAGGAAACCAGAGTGCGATCTGAATGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009832 GO:0009987 GO:0010228 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0022414 GO:0030243 GO:0032501 GO:0032502 GO:0042546 GO:0043170 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0046527 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051273 GO:0061458 GO:0071554 GO:0071669 GO:0071704 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

280

Amino Acids

32.88

Weight (kDa)

5.39

Isoelectric Point (pI)

35.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	29 - 205	3.1e-45	Glycosyl hydrolases family 16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25050 AT4G13080 AT4G13090
fragaria_vesca	FvH4_2g18760 FvH4_2g18761 FvH4_3g26030 FvH4_3g26030
malus_domestica	MD03G1093100.v1.1 MD05G1173300.v1.1 MD05G1173400.v1.1 MD05G1173600.v1.1
prunus_persica	Prupe.8G200900_v2.0.a1 Prupe.8G200900_v2.0.a1 Prupe.8G200900_v2.0.a1 Prupe.8G201000_v2.0.a1
pyrus_communis	pycom05g16020 pycom05g16030 pycom05g16040
rosa_chinensis	RchiOBHm_Chr5g0047321 RchiOBHm_Chr6g0284451 RchiOBHm_Chr6g0284461 RchiOBHm_Chr6g0284491
rosa_laevigata	RLG00000012742 RLG00000012743
rosa_roxburghii	Rroxscaffold_1G00034030 Rroxscaffold_7G00184670 Rroxscaffold_7G00184680 Rroxscaffold_7G00184690
rosa_rugosa	Rorug05G0235900 Rorug06G0163800
rosa_samantha	Rh5BG323400 Rh5CG350600 Rh5DG334400 Rh6AG276600 Rh6AG276900 Rh6BG276600 Rh6BG276700 Rh6CG278600 Rh6CG278700 Rh6CG278900 Rh6DG271000 Rh6DG271100 Rh6DG271300
rosa_wichuraiana	Rw6G023760 Rw6G023770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	387
AcsI	RAATTY	4 cut(s)	350, 447, 488, 521
AcuI	CTGAAG	1 cut(s)	267
AcvI	CACGTG	1 cut(s)	65
AfiI	CCNNNNNNNGG	1 cut(s)	17
AgsI	TTSAA	2 cut(s)	121, 508
AjnI	CCWGG	2 cut(s)	242, 337
AluBI	AGCT	8 cut(s)	151, 193, 198, 310, 322, 567, 632, 800
AluI	AGCT	8 cut(s)	151, 193, 198, 310, 322, 567, 632, 800
ApeKI	GCWGC	1 cut(s)	660
ApoI	RAATTY	4 cut(s)	350, 447, 488, 521
AspLEI	GCGC	1 cut(s)	176
BaeGI	GKGCMC	1 cut(s)	699
BauI	CACGAG	1 cut(s)	591
BbrPI	CACGTG	1 cut(s)	65
BbvI	GCAGC	1 cut(s)	647
BccI	CCATC	3 cut(s)	371, 471, 686
BceAI	ACGGC	1 cut(s)	673
BciT130I	CCWGG	2 cut(s)	244, 339
BclI	TGATCA	1 cut(s)	112
BisI	GCNGC	1 cut(s)	661
BlpI	GCTNAGC	1 cut(s)	194
BlsI	GCNGC	1 cut(s)	662
Bme1390I	CCNGG	2 cut(s)	244, 339
BmiI	GGNNCC	1 cut(s)	458
BmrFI	CCNGG	2 cut(s)	244, 339
BmrI	ACTGGG	1 cut(s)	112
BmsI	GCATC	2 cut(s)	45, 586
BmuI	ACTGGG	1 cut(s)	112
Bpu1102I	GCTNAGC	1 cut(s)	194
BsaAI	YACGTR	1 cut(s)	65
BsaJI	CCNNGG	3 cut(s)	156, 338, 809
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
Bse1I	ACTGG	2 cut(s)	11, 107
BseBI	CCWGG	2 cut(s)	244, 339
BseDI	CCNNGG	3 cut(s)	156, 338, 809
BseGI	GGATG	2 cut(s)	60, 310
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseMII	CTCAG	1 cut(s)	420
BseNI	ACTGG	2 cut(s)	11, 107
BseSI	GKGCMC	1 cut(s)	699
BseXI	GCAGC	1 cut(s)	647
BsgI	GTGCAG	1 cut(s)	646
BslI	CCNNNNNNNGG	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	699
Bsp143I	GATC	2 cut(s)	112, 826
Bsp1720I	GCTNAGC	1 cut(s)	194
BspACI	CCGC	1 cut(s)	387
BspCNI	CTCAG	1 cut(s)	421
BspHI	TCATGA	1 cut(s)	436
BspLI	GGNNCC	1 cut(s)	458
BsrI	ACTGG	2 cut(s)	11, 107
BssECI	CCNNGG	3 cut(s)	156, 338, 809
BssMI	GATC	2 cut(s)	112, 826
BssSI	CACGAG	1 cut(s)	591
BssT1I	CCWWGG	2 cut(s)	156, 809
Bst2BI	CACGAG	1 cut(s)	591
Bst2UI	CCWGG	2 cut(s)	244, 339
Bst4CI	ACNGT	3 cut(s)	689, 716, 794
BstBAI	YACGTR	1 cut(s)	65
BstC8I	GCNNGC	2 cut(s)	60, 565
BstDEI	CTNAG	2 cut(s)	194, 429
BstF5I	GGATG	2 cut(s)	60, 310
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	2 cut(s)	115, 829
BstMBI	GATC	2 cut(s)	112, 826
BstMWI	GCNNNNNNNGC	1 cut(s)	584
BstNI	CCWGG	2 cut(s)	244, 339
BstSCI	CCNGG	2 cut(s)	242, 337
BstSLI	GKGCMC	1 cut(s)	699
BstV1I	GCAGC	1 cut(s)	647
BstXI	CCANNNNNNTGG	2 cut(s)	47, 243
BtgZI	GCGATG	1 cut(s)	303
BtsCI	GGATG	2 cut(s)	60, 310
BtsIMutI	CAGTG	1 cut(s)	18
Cac8I	GCNNGC	2 cut(s)	60, 565
CciI	TCATGA	1 cut(s)	436
CfoI	GCGC	1 cut(s)	176
CviAII	CATG	3 cut(s)	220, 403, 437
DdeI	CTNAG	2 cut(s)	194, 429
DpnI	GATC	2 cut(s)	114, 828
DpnII	GATC	2 cut(s)	112, 826
DraI	TTTAAA	1 cut(s)	628
Eco130I	CCWWGG	2 cut(s)	156, 809
Eco57I	CTGAAG	1 cut(s)	267
Eco72I	CACGTG	1 cut(s)	65
EcoRII	CCWGG	2 cut(s)	242, 337
EcoT14I	CCWWGG	2 cut(s)	156, 809
ErhI	CCWWGG	2 cut(s)	156, 809
FaeI	CATG	3 cut(s)	223, 406, 440
FalI	AAGNNNNNCTT	2 cut(s)	135, 167
FatI	CATG	3 cut(s)	219, 402, 436
FbaI	TGATCA	1 cut(s)	112
Fnu4HI	GCNGC	1 cut(s)	661
FokI	GGATG	2 cut(s)	67, 317
Fsp4HI	GCNGC	1 cut(s)	661
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	1 cut(s)	661
HhaI	GCGC	1 cut(s)	176
Hin1II	CATG	3 cut(s)	223, 406, 440
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HincII	GTYRAC	2 cut(s)	100, 484
HindII	GTYRAC	2 cut(s)	100, 484
HindIII	AAGCTT	1 cut(s)	565
HinfI	GANTC	1 cut(s)	737
Hpy166II	GTNNAC	3 cut(s)	100, 484, 655
Hpy188I	TCNGA	1 cut(s)	831
Hpy188III	TCNNGA	4 cut(s)	302, 437, 508, 593
Hpy8I	GTNNAC	3 cut(s)	100, 484, 655
HpyAV	CCTTC	1 cut(s)	635
HpyCH4III	ACNGT	3 cut(s)	689, 716, 794
HpyCH4IV	ACGT	2 cut(s)	64, 651
HpyCH4V	TGCA	5 cut(s)	62, 264, 599, 620, 663
HpyF10VI	GCNNNNNNNGC	1 cut(s)	584
HpyF3I	CTNAG	2 cut(s)	194, 429
HpySE526I	ACGT	2 cut(s)	64, 651
Hsp92II	CATG	3 cut(s)	223, 406, 440
HspAI	GCGC	1 cut(s)	174
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	2 cut(s)	112, 826
Lsp1109I	GCAGC	1 cut(s)	647
LweI	GCATC	2 cut(s)	45, 586
MaeII	ACGT	2 cut(s)	64, 651
MaeIII	GTNAC	1 cut(s)	65
MalI	GATC	2 cut(s)	114, 828
MboI	GATC	2 cut(s)	112, 826
MboII	GAAGA	1 cut(s)	783
MhlI	GDGCHC	1 cut(s)	699
MluCI	AATT	7 cut(s)	33, 350, 447, 468, 488, 495, 521
MlyI	GAGTC	1 cut(s)	731
MmeI	TCCRAC	2 cut(s)	64, 765
MnlI	CCTC	5 cut(s)	128, 216, 306, 388, 754
MseI	TTAA	2 cut(s)	32, 627
MslI	CAYNNNNRTG	1 cut(s)	303
MspA1I	CMGCKG	1 cut(s)	800
MspR9I	CCNGG	2 cut(s)	244, 339
MvaI	CCWGG	2 cut(s)	244, 339
MwoI	GCNNNNNNNGC	1 cut(s)	584
NdeII	GATC	2 cut(s)	112, 826
NlaIII	CATG	3 cut(s)	223, 406, 440
NlaIV	GGNNCC	1 cut(s)	458
NmuCI	GTSAC	1 cut(s)	65
PagI	TCATGA	1 cut(s)	436
PkrI	GCNGC	1 cut(s)	662
PleI	GAGTC	1 cut(s)	731
PmaCI	CACGTG	1 cut(s)	65
PmlI	CACGTG	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	731
Ppu21I	YACGTR	1 cut(s)	65
Psp6I	CCWGG	2 cut(s)	242, 337
PspCI	CACGTG	1 cut(s)	65
PspGI	CCWGG	2 cut(s)	242, 337
PspN4I	GGNNCC	1 cut(s)	458
PvuII	CAGCTG	1 cut(s)	800
RseI	CAYNNNNRTG	1 cut(s)	303
SaqAI	TTAA	2 cut(s)	32, 627
SatI	GCNGC	1 cut(s)	661
Sau3AI	GATC	2 cut(s)	112, 826
SchI	GAGTC	1 cut(s)	731
ScrFI	CCNGG	2 cut(s)	244, 339
SduI	GDGCHC	1 cut(s)	699
SfaNI	GCATC	2 cut(s)	45, 586
SmiMI	CAYNNNNRTG	1 cut(s)	303
Sse9I	AATT	7 cut(s)	33, 350, 447, 468, 488, 495, 521
SsiI	CCGC	1 cut(s)	387
SspI	AATATT	1 cut(s)	73
StyD4I	CCNGG	2 cut(s)	242, 337
StyI	CCWWGG	2 cut(s)	156, 809
TaaI	ACNGT	3 cut(s)	689, 716, 794
TaiI	ACGT	2 cut(s)	67, 654
TaqI	TCGA	2 cut(s)	133, 147
TasI	AATT	7 cut(s)	33, 350, 447, 468, 488, 495, 521
Tru1I	TTAA	2 cut(s)	32, 627
Tru9I	TTAA	2 cut(s)	32, 627
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	65
TseI	GCWGC	1 cut(s)	660
Tsp45I	GTSAC	1 cut(s)	65
TspDTI	ATGAA	4 cut(s)	108, 306, 566, 654
TspRI	CASTG	1 cut(s)	18
XapI	RAATTY	4 cut(s)	350, 447, 488, 521
XcmI	CCANNNNNNNNNTGG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.