Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001964

Physical Location & Seq

Genomic Coordinates Reverse (-)

47085237 .. 47086377

Gene Structure 1141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG276900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGAAACATACAAGTGAAGCCGCTGATAATGTTAGCTTTGATGAAACCTACGTCGTTCGATGCGGAAATGATTATATCTCGAAGCTAGACCAAGGAAGAGAAGTTCAGCTCTCTTTGGACTTCAGGTTTTTTGTGGACAACATCCCCATTAGAGTGTTCAAGAACAATACAAGGTTGGGTGCAAGGTACCCTTCACAACAGATGTCTGTGGAGGGAAGCATATGGAATGGAGAATCTTGGGCATTAAGTACGTGGGAAAAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

88

Amino Acids

10.2

Weight (kDa)

5.04

Isoelectric Point (pI)

17.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	41 - 82	3.8e-09	Glycosyl hydrolases family 16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25050 AT4G13080 AT4G13090
fragaria_vesca	FvH4_2g18760 FvH4_2g18761 FvH4_3g26030 FvH4_3g26030
malus_domestica	MD03G1093100.v1.1 MD05G1173300.v1.1 MD05G1173400.v1.1 MD05G1173600.v1.1
prunus_persica	Prupe.8G200900_v2.0.a1 Prupe.8G200900_v2.0.a1 Prupe.8G200900_v2.0.a1 Prupe.8G201000_v2.0.a1
pyrus_communis	pycom05g16020 pycom05g16030 pycom05g16040
rosa_chinensis	RchiOBHm_Chr5g0047321 RchiOBHm_Chr6g0284451 RchiOBHm_Chr6g0284461 RchiOBHm_Chr6g0284491
rosa_laevigata	RLG00000012742 RLG00000012743
rosa_roxburghii	Rroxscaffold_1G00034030 Rroxscaffold_7G00184670 Rroxscaffold_7G00184680 Rroxscaffold_7G00184690
rosa_rugosa	Rorug05G0235900 Rorug06G0163800
rosa_samantha	Rh5BG323400 Rh5CG350600 Rh5DG334400 Rh6AG276600 Rh6AG276900 Rh6BG276600 Rh6BG276700 Rh6CG278600 Rh6CG278700 Rh6CG278900 Rh6DG271000 Rh6DG271100 Rh6DG271300
rosa_wichuraiana	Rw6G023760 Rw6G023770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	186
AccB1I	GGYRCC	1 cut(s)	186
AciI	CCGC	2 cut(s)	21, 63
AcuI	CTGAAG	1 cut(s)	106
AfaI	GTAC	2 cut(s)	188, 250
AgsI	TTSAA	1 cut(s)	160
AloI	GAACNNNNNNTCC	2 cut(s)	87, 119
AluBI	AGCT	3 cut(s)	36, 85, 109
AluI	AGCT	3 cut(s)	36, 85, 109
Asp718I	GGTACC	1 cut(s)	186
BanI	GGYRCC	1 cut(s)	186
BfaI	CTAG	1 cut(s)	86
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
BmiI	GGNNCC	1 cut(s)	188
BmsI	GCATC	1 cut(s)	50
BsaAI	YACGTR	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	91
BseDI	CCNNGG	1 cut(s)	91
BseGI	GGATG	1 cut(s)	141
BshNI	GGYRCC	1 cut(s)	186
BspACI	CCGC	2 cut(s)	21, 63
BspLI	GGNNCC	1 cut(s)	188
BspT107I	GGYRCC	1 cut(s)	186
BssECI	CCNNGG	1 cut(s)	91
BssT1I	CCWWGG	1 cut(s)	91
Bst6I	CTCTTC	1 cut(s)	91
BstBAI	YACGTR	1 cut(s)	252
BstF5I	GGATG	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	141
Csp6I	GTAC	2 cut(s)	187, 249
CviJI	RGCY	4 cut(s)	20, 36, 85, 109
CviKI_1	RGCY	4 cut(s)	20, 36, 85, 109
CviQI	GTAC	2 cut(s)	187, 249
Eam1104I	CTCTTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	106
EcoT14I	CCWWGG	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	91
FaiI	YATR	4 cut(s)	9, 75, 221, 223
FalI	AAGNNNNNCTT	2 cut(s)	175, 207
FauNDI	CATATG	1 cut(s)	221
Fnu4HI	GCNGC	1 cut(s)	21
FokI	GGATG	1 cut(s)	128
Fsp4HI	GCNGC	1 cut(s)	21
FspBI	CTAG	1 cut(s)	86
GluI	GCNGC	1 cut(s)	21
HinfI	GANTC	1 cut(s)	233
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188III	TCNNGA	2 cut(s)	79, 160
Hpy8I	GTNNAC	1 cut(s)	136
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	1 cut(s)	201
HpyCH4IV	ACGT	2 cut(s)	51, 251
HpyCH4V	TGCA	1 cut(s)	182
HpySE526I	ACGT	2 cut(s)	51, 251
KpnI	GGTACC	1 cut(s)	190
LpnPI	CCDG	1 cut(s)	109
LweI	GCATC	1 cut(s)	50
MaeI	CTAG	1 cut(s)	86
MaeII	ACGT	2 cut(s)	51, 251
MboII	GAAGA	1 cut(s)	108
MnlI	CCTC	1 cut(s)	205
MseI	TTAA	1 cut(s)	245
MslI	CAYNNNNRTG	2 cut(s)	12, 152
MspA1I	CMGCKG	1 cut(s)	23
NdeI	CATATG	1 cut(s)	221
NlaIV	GGNNCC	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	233
PkrI	GCNGC	1 cut(s)	22
Ppu21I	YACGTR	1 cut(s)	252
PspN4I	GGNNCC	1 cut(s)	188
RsaI	GTAC	2 cut(s)	188, 250
RsaNI	GTAC	2 cut(s)	187, 249
RseI	CAYNNNNRTG	2 cut(s)	12, 152
SaqAI	TTAA	1 cut(s)	245
SatI	GCNGC	1 cut(s)	21
SetI	ASST	9 cut(s)	38, 50, 54, 87, 111, 128, 176, 188, 254
SfaNI	GCATC	1 cut(s)	50
SgeI	CNNG	9 cut(s)	24, 91, 98, 104, 136, 172, 183, 195, 249
SmiMI	CAYNNNNRTG	2 cut(s)	12, 152
SsiI	CCGC	2 cut(s)	21, 63
SspMI	CTAG	1 cut(s)	86
StyI	CCWWGG	1 cut(s)	91
TaiI	ACGT	2 cut(s)	54, 254
TaqI	TCGA	2 cut(s)	58, 80
TauI	GCSGC	1 cut(s)	23
TfiI	GAWTC	1 cut(s)	233
Tru1I	TTAA	1 cut(s)	245
Tru9I	TTAA	1 cut(s)	245
TspDTI	ATGAA	2 cut(s)	17, 57
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.