Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001964

Physical Location & Seq

Genomic Coordinates Reverse (-)

49749449 .. 49751818

Gene Structure 2370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG276600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGAGGATCAAGGTACCAGTGAGGGATTGTGCTGGAGTTGTCTTAGCTTTTTATCTAAGATCAGAGGGTGATCGTAACCAGGATGAGCTAGACTTTGAGTTCTTGGGTAATAGAGAAGGCAAGCCAATCACATTGCAGACAAATGTGATTACAAATGGTGATAACTTTAGAGAGCAAAGGACACTTCTTTGGTTTGACCCAACAGCAGATTTTCATGACTACAAGATTCTTTGGAACCATCATCAAGTTGTCTTTTATATCGACGATATCCCCATCAGGGTTTTTAGGAACAACAAAAAAATTAAGGTTCCCTATCTAACGCGGCCGATGGTAATAGATGCAAGCATATGGGATGGATCAGATTGGGCAACTGATGGAGGCCAAACAAAGATCGACTATAACCATGCACCATTTAGAGCTTATTTCCAAGGGTTTGACATGAATGCCTGCTCACTGGACAAGTCCAAGACCGATGTCTCGGAATGTTATGCTACAAAATATTTGTGGAACCACAGGGTCTATTGGCAACTAAACCCAACGGAACAAGAAGCATATGACAGGGTGAGAAGAGAATATATGAACTATGACTATTGTACTGATACGCAAAGGTTCCACACGCTTCCCCGAGAGTGCACCAGTGATAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009832 GO:0009987 GO:0010228 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0022414 GO:0030243 GO:0032501 GO:0032502 GO:0042546 GO:0043170 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0046527 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051273 GO:0061458 GO:0071554 GO:0071669 GO:0071704 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

215

Amino Acids

25.6

Weight (kDa)

5.68

Isoelectric Point (pI)

43.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	1 - 134	3e-43	Glycosyl hydrolases family 16
XET_C	PF06955	166 - 211	2e-15	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25050 AT4G13080 AT4G13090
fragaria_vesca	FvH4_2g18760 FvH4_2g18761 FvH4_3g26030 FvH4_3g26030
malus_domestica	MD03G1093100.v1.1 MD05G1173300.v1.1 MD05G1173400.v1.1 MD05G1173600.v1.1
prunus_persica	Prupe.8G200900_v2.0.a1 Prupe.8G200900_v2.0.a1 Prupe.8G200900_v2.0.a1 Prupe.8G201000_v2.0.a1
pyrus_communis	pycom05g16020 pycom05g16030 pycom05g16040
rosa_chinensis	RchiOBHm_Chr5g0047321 RchiOBHm_Chr6g0284451 RchiOBHm_Chr6g0284461 RchiOBHm_Chr6g0284491
rosa_laevigata	RLG00000012742 RLG00000012743
rosa_roxburghii	Rroxscaffold_1G00034030 Rroxscaffold_7G00184670 Rroxscaffold_7G00184680 Rroxscaffold_7G00184690
rosa_rugosa	Rorug05G0235900 Rorug06G0163800
rosa_samantha	Rh5BG323400 Rh5CG350600 Rh5DG334400 Rh6AG276600 Rh6AG276900 Rh6BG276600 Rh6BG276700 Rh6CG278600 Rh6CG278700 Rh6CG278900 Rh6DG271000 Rh6DG271100 Rh6DG271300
rosa_wichuraiana	Rw6G023760 Rw6G023770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	13
AccB1I	GGYRCC	1 cut(s)	13
AccII	CGCG	1 cut(s)	322
AciI	CCGC	1 cut(s)	322
AclWI	GGATC	2 cut(s)	14, 364
AcoI	YGGCCR	1 cut(s)	323
AfaI	GTAC	2 cut(s)	15, 595
AfiI	CCNNNNNNNGG	1 cut(s)	277
AjnI	CCWGG	1 cut(s)	78
AluBI	AGCT	4 cut(s)	47, 88, 419, 645
AluI	AGCT	4 cut(s)	47, 88, 419, 645
Alw21I	GWGCWC	1 cut(s)	635
Alw26I	GTCTC	1 cut(s)	481
Alw44I	GTGCAC	1 cut(s)	631
AlwI	GGATC	2 cut(s)	14, 364
Ama87I	CYCGRG	1 cut(s)	624
AoxI	GGCC	2 cut(s)	323, 379
ApaLI	GTGCAC	1 cut(s)	631
Asp718I	GGTACC	1 cut(s)	13
AsuHPI	GGTGA	3 cut(s)	80, 170, 574
AvaI	CYCGRG	1 cut(s)	624
BaeGI	GKGCMC	1 cut(s)	635
BanI	GGYRCC	1 cut(s)	13
Bbv12I	GWGCWC	1 cut(s)	635
BccI	CCATC	5 cut(s)	246, 281, 322, 347, 368
BciT130I	CCWGG	1 cut(s)	80
BcoDI	GTCTC	1 cut(s)	481
BfaI	CTAG	2 cut(s)	89, 646
BisI	GCNGC	1 cut(s)	323
BlsI	GCNGC	1 cut(s)	324
Bme1390I	CCNGG	1 cut(s)	80
BmeT110I	CYCGRG	1 cut(s)	624
BmiI	GGNNCC	5 cut(s)	15, 236, 309, 509, 611
BmrFI	CCNGG	1 cut(s)	80
BmsI	GCATC	1 cut(s)	328
BoxI	GACNNNNGTC	1 cut(s)	473
BpmI	CTGGAG	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	427
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
Bse1I	ACTGG	3 cut(s)	17, 459, 636
Bse3DI	GCAATG	1 cut(s)	131
BseBI	CCWGG	1 cut(s)	80
BseDI	CCNNGG	1 cut(s)	427
BseGI	GGATG	2 cut(s)	88, 358
BseLI	CCNNNNNNNGG	1 cut(s)	277
BseMI	GCAATG	1 cut(s)	131
BseNI	ACTGG	3 cut(s)	17, 459, 636
BseSI	GKGCMC	1 cut(s)	635
BseX3I	CGGCCG	1 cut(s)	323
Bsh1236I	CGCG	1 cut(s)	322
Bsh1285I	CGRYCG	1 cut(s)	326
BshFI	GGCC	2 cut(s)	325, 381
BshNI	GGYRCC	1 cut(s)	13
BsiEI	CGRYCG	1 cut(s)	326
BsiHKAI	GWGCWC	1 cut(s)	635
BsiHKCI	CYCGRG	1 cut(s)	624
BslI	CCNNNNNNNGG	1 cut(s)	277
BsmAI	GTCTC	1 cut(s)	481
BsmI	GAATGC	1 cut(s)	448
BsnI	GGCC	2 cut(s)	325, 381
BsoBI	CYCGRG	1 cut(s)	624
Bsp1286I	GDGCHC	1 cut(s)	635
Bsp143I	GATC	5 cut(s)	6, 59, 70, 356, 390
BspACI	CCGC	1 cut(s)	322
BspANI	GGCC	2 cut(s)	325, 381
BspFNI	CGCG	1 cut(s)	322
BspHI	TCATGA	1 cut(s)	214
BspLI	GGNNCC	5 cut(s)	15, 236, 309, 509, 611
BspPI	GGATC	2 cut(s)	14, 364
BspT107I	GGYRCC	1 cut(s)	13
BsrDI	GCAATG	1 cut(s)	131
BsrI	ACTGG	3 cut(s)	17, 459, 636
BssECI	CCNNGG	1 cut(s)	427
BssMI	GATC	5 cut(s)	6, 59, 70, 356, 390
BssT1I	CCWWGG	1 cut(s)	427
Bst2UI	CCWGG	1 cut(s)	80
Bst6I	CTCTTC	1 cut(s)	562
BstC8I	GCNNGC	3 cut(s)	122, 343, 448
BstDEI	CTNAG	2 cut(s)	43, 56
BstF5I	GGATG	2 cut(s)	88, 358
BstFNI	CGCG	1 cut(s)	322
BstKTI	GATC	5 cut(s)	9, 62, 73, 359, 393
BstMAI	GTCTC	1 cut(s)	481
BstMBI	GATC	5 cut(s)	6, 59, 70, 356, 390
BstMCI	CGRYCG	1 cut(s)	326
BstNI	CCWGG	1 cut(s)	80
BstPAI	GACNNNNGTC	1 cut(s)	473
BstSCI	CCNGG	1 cut(s)	78
BstSLI	GKGCMC	1 cut(s)	635
BstUI	CGCG	1 cut(s)	322
BstZI	CGGCCG	1 cut(s)	323
BsuRI	GGCC	2 cut(s)	325, 381
BtsCI	GGATG	2 cut(s)	88, 358
BtsIMutI	CAGTG	3 cut(s)	24, 452, 643
Cac8I	GCNNGC	3 cut(s)	122, 343, 448
CciI	TCATGA	1 cut(s)	214
Csp6I	GTAC	2 cut(s)	14, 594
CviAII	CATG	3 cut(s)	215, 404, 439
CviJI	RGCY	7 cut(s)	47, 88, 124, 325, 381, 419, 645
CviKI_1	RGCY	7 cut(s)	47, 88, 124, 325, 381, 419, 645
CviQI	GTAC	2 cut(s)	14, 594
DdeI	CTNAG	2 cut(s)	43, 56
DpnI	GATC	5 cut(s)	8, 61, 72, 358, 392
DpnII	GATC	5 cut(s)	6, 59, 70, 356, 390
EaeI	YGGCCR	1 cut(s)	323
EagI	CGGCCG	1 cut(s)	323
Eam1104I	CTCTTC	1 cut(s)	562
EarI	CTCTTC	1 cut(s)	562
EclXI	CGGCCG	1 cut(s)	323
Eco130I	CCWWGG	1 cut(s)	427
Eco32I	GATATC	1 cut(s)	268
Eco52I	CGGCCG	1 cut(s)	323
Eco88I	CYCGRG	1 cut(s)	624
EcoRII	CCWGG	1 cut(s)	78
EcoRV	GATATC	1 cut(s)	268
EcoT14I	CCWWGG	1 cut(s)	427
ErhI	CCWWGG	1 cut(s)	427
FaeI	CATG	3 cut(s)	218, 407, 442
FatI	CATG	3 cut(s)	214, 403, 438
FauNDI	CATATG	2 cut(s)	347, 553
Fnu4HI	GCNGC	1 cut(s)	323
FokI	GGATG	2 cut(s)	95, 365
Fsp4HI	GCNGC	1 cut(s)	323
FspBI	CTAG	2 cut(s)	89, 646
GluI	GCNGC	1 cut(s)	323
GsuI	CTGGAG	1 cut(s)	54
HaeIII	GGCC	2 cut(s)	325, 381
Hin1II	CATG	3 cut(s)	218, 407, 442
HinfI	GANTC	1 cut(s)	226
HphI	GGTGA	3 cut(s)	80, 170, 574
Hpy166II	GTNNAC	1 cut(s)	633
Hpy188I	TCNGA	3 cut(s)	64, 361, 481
Hpy188III	TCNNGA	1 cut(s)	215
Hpy8I	GTNNAC	1 cut(s)	633
Hpy99I	CGWCG	1 cut(s)	266
HpyAV	CCTTC	1 cut(s)	110
HpyCH4V	TGCA	4 cut(s)	136, 341, 407, 633
HpyF3I	CTNAG	2 cut(s)	43, 56
Hsp92II	CATG	3 cut(s)	218, 407, 442
KpnI	GGTACC	1 cut(s)	17
Kzo9I	GATC	5 cut(s)	6, 59, 70, 356, 390
LpnPI	CCDG	9 cut(s)	18, 30, 65, 92, 262, 440, 460, 499, 544
LweI	GCATC	1 cut(s)	328
MaeI	CTAG	2 cut(s)	89, 646
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	5 cut(s)	8, 61, 72, 358, 392
MboI	GATC	5 cut(s)	6, 59, 70, 356, 390
MboII	GAAGA	1 cut(s)	579
MhlI	GDGCHC	1 cut(s)	635
MluCI	AATT	1 cut(s)	300
MnlI	CCTC	3 cut(s)	15, 58, 371
MseI	TTAA	1 cut(s)	303
MspR9I	CCNGG	1 cut(s)	80
Mva1269I	GAATGC	1 cut(s)	448
MvaI	CCWGG	1 cut(s)	80
MvnI	CGCG	1 cut(s)	322
NdeI	CATATG	2 cut(s)	347, 553
NdeII	GATC	5 cut(s)	6, 59, 70, 356, 390
NlaIII	CATG	3 cut(s)	218, 407, 442
NlaIV	GGNNCC	5 cut(s)	15, 236, 309, 509, 611
PagI	TCATGA	1 cut(s)	214
PctI	GAATGC	1 cut(s)	448
PfeI	GAWTC	1 cut(s)	226
PkrI	GCNGC	1 cut(s)	324
PshAI	GACNNNNGTC	1 cut(s)	473
Psp6I	CCWGG	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	78
PspN4I	GGNNCC	5 cut(s)	15, 236, 309, 509, 611
RsaI	GTAC	2 cut(s)	15, 595
RsaNI	GTAC	2 cut(s)	14, 594
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	1 cut(s)	323
Sau3AI	GATC	5 cut(s)	6, 59, 70, 356, 390
ScrFI	CCNGG	1 cut(s)	80
SduI	GDGCHC	1 cut(s)	635
SetI	ASST	7 cut(s)	15, 49, 90, 309, 421, 611, 647
SfaNI	GCATC	1 cut(s)	328
Sse9I	AATT	1 cut(s)	300
SsiI	CCGC	1 cut(s)	322
SspI	AATATT	1 cut(s)	500
SspMI	CTAG	2 cut(s)	89, 646
StyD4I	CCNGG	1 cut(s)	78
StyI	CCWWGG	1 cut(s)	427
TaqI	TCGA	2 cut(s)	261, 393
TaqII	GACCGA	1 cut(s)	485
TasI	AATT	1 cut(s)	300
TatI	WGTACW	1 cut(s)	593
TauI	GCSGC	1 cut(s)	325
TfiI	GAWTC	1 cut(s)	226
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TscAI	CASTG	3 cut(s)	24, 459, 643
TspDTI	ATGAA	3 cut(s)	203, 455, 593
TspGWI	ACGGA	1 cut(s)	554
TspRI	CASTG	3 cut(s)	24, 459, 643
VneI	GTGCAC	1 cut(s)	631
XspI	CTAG	2 cut(s)	89, 646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.