Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001964

Physical Location & Seq

Genomic Coordinates Reverse (-)

19436028 .. 19437625

Gene Structure 1598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g16030.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGCTTTTCAAGTGATCTCTGTGTTTTTTCTTCTACTTAGTGGGATATTTGCAGCTGAAAATGATGACATTGCTTTCGATAAAAATTATGAGTTCATATGGGGAAATGATCACATCTTGTCTCTGAATCAAGGGAGAGAACTCCAGCTTACGTTGGATAATCGTTCCGGGTGTAAATTTGCTTCGTACCTAAACTACAGTTCTGGGTTCTTCCATATGAGGATGAAGATACCAGAGAATAATAATACTGCAGGAGTTGTCACAAGTTTTTATCTAATGTCAAAGGCTAGTGCTAGTCAGCATGATGAACTGGACTTTGAGTTCTTGGGTAACATAGAAGGCCAGCAAATCACATTGCAAACAAATGTGTTTGTAAATGGTGTGGGGAACAGAGAGCAAAGGATTAACCTATGGTTTGACCCAGCAGGAAATTTCCACGATTACAAAATTCTTTGGAACCCTCATCATGTTGTATTTTTCATCGATGACACCCCAATTAGGGTTTTCAATAATTACACAAACTATGGAGTTCCGTACCCGACGCAGCCAATGCGAATCGAAGCAGCCTTGTGGACTGCAGATTGGGCAACTTTCGGGCATAAGATAAATTGGACTTACGCACCATTTGTAGCTCACTACCAAGGATTTGACATAGGTGGGTGCTCAGCACAGAACTCCGATGTTGAAGAATGTTATAGCTCCAATCATTGGTGGAACAACATGGAGTATTGGAACCTAAATTCTACCCAACAGAAGGCATACGAGAATGTGAGAAAGAAATACATGAACTACGACTACTGTGATGACAAGGCTAAGTACCCTTCCGGGCTTCCCCGAGAGTGCGTTATTCAGAAAAATGGTCAGCTACATAATGGTCAGAAATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009832 GO:0009987 GO:0010228 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0022414 GO:0030243 GO:0032501 GO:0032502 GO:0042546 GO:0043170 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0046527 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051273 GO:0061458 GO:0071554 GO:0071669 GO:0071704 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

296

Amino Acids

34.31

Weight (kDa)

5.53

Isoelectric Point (pI)

36.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25050 AT4G13080 AT4G13090
fragaria_vesca	FvH4_2g18760 FvH4_2g18761 FvH4_3g26030 FvH4_3g26030
malus_domestica	MD03G1093100.v1.1 MD05G1173300.v1.1 MD05G1173400.v1.1 MD05G1173600.v1.1
prunus_persica	Prupe.8G200900_v2.0.a1 Prupe.8G200900_v2.0.a1 Prupe.8G200900_v2.0.a1 Prupe.8G201000_v2.0.a1
pyrus_communis	pycom05g16020 pycom05g16030 pycom05g16040
rosa_chinensis	RchiOBHm_Chr5g0047321 RchiOBHm_Chr6g0284451 RchiOBHm_Chr6g0284461 RchiOBHm_Chr6g0284491
rosa_laevigata	RLG00000012742 RLG00000012743
rosa_roxburghii	Rroxscaffold_1G00034030 Rroxscaffold_7G00184670 Rroxscaffold_7G00184680 Rroxscaffold_7G00184690
rosa_rugosa	Rorug05G0235900 Rorug06G0163800
rosa_samantha	Rh5BG323400 Rh5CG350600 Rh5DG334400 Rh6AG276600 Rh6AG276900 Rh6BG276600 Rh6BG276700 Rh6CG278600 Rh6CG278700 Rh6CG278900 Rh6DG271000 Rh6DG271100 Rh6DG271300
rosa_wichuraiana	Rw6G023760 Rw6G023770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	708
AcsI	RAATTY	4 cut(s)	176, 430, 447, 739
AfaI	GTAC	3 cut(s)	188, 536, 818
AfiI	CCNNNNNNNGG	4 cut(s)	498, 499, 708, 754
AgsI	TTSAA	3 cut(s)	11, 508, 686
AloI	GAACNNNNNNTCC	2 cut(s)	305, 337
AluBI	AGCT	5 cut(s)	56, 148, 632, 699, 865
AluI	AGCT	5 cut(s)	56, 148, 632, 699, 865
Alw21I	GWGCWC	1 cut(s)	665
Alw26I	GTCTC	1 cut(s)	126
Ama87I	CYCGRG	1 cut(s)	834
AoxI	GGCC	1 cut(s)	340
ApeKI	GCWGC	3 cut(s)	53, 544, 563
ApoI	RAATTY	4 cut(s)	176, 430, 447, 739
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AsuC2I	CCSGG	2 cut(s)	169, 826
AvaI	CYCGRG	1 cut(s)	834
BarI	GAAGNNNNNNTAC	2 cut(s)	166, 198
Bbv12I	GWGCWC	1 cut(s)	665
BbvI	GCAGC	3 cut(s)	65, 556, 575
BclI	TGATCA	1 cut(s)	109
BcnI	CCSGG	2 cut(s)	169, 826
BcoDI	GTCTC	1 cut(s)	126
BfaI	CTAG	2 cut(s)	288, 294
BfmI	CTRYAG	3 cut(s)	196, 249, 576
BisI	GCNGC	3 cut(s)	54, 545, 564
BlpI	GCTNAGC	1 cut(s)	664
BlsI	GCNGC	3 cut(s)	55, 546, 565
Bme1390I	CCNGG	2 cut(s)	169, 826
BmeT110I	CYCGRG	1 cut(s)	834
BmiI	GGNNCC	2 cut(s)	458, 734
BmrFI	CCNGG	2 cut(s)	169, 826
BpmI	CTGGAG	1 cut(s)	128
Bpu1102I	GCTNAGC	1 cut(s)	664
BpuMI	CCSGG	2 cut(s)	169, 826
Bsa29I	ATCGAT	1 cut(s)	483
BsaJI	CCNNGG	1 cut(s)	640
Bsc4I	CCNNNNNNNGG	4 cut(s)	498, 499, 708, 754
Bse1I	ACTGG	1 cut(s)	315
Bse3DI	GCAATG	2 cut(s)	69, 353
BseCI	ATCGAT	1 cut(s)	483
BseDI	CCNNGG	1 cut(s)	640
BseGI	GGATG	1 cut(s)	228
BseLI	CCNNNNNNNGG	4 cut(s)	498, 499, 708, 754
BseMI	GCAATG	2 cut(s)	69, 353
BseMII	CTCAG	1 cut(s)	678
BseNI	ACTGG	1 cut(s)	315
BseXI	GCAGC	3 cut(s)	65, 556, 575
BseYI	CCCAGC	1 cut(s)	421
BshFI	GGCC	1 cut(s)	342
BshVI	ATCGAT	1 cut(s)	483
BsiHKAI	GWGCWC	1 cut(s)	665
BsiHKCI	CYCGRG	1 cut(s)	834
BsiSI	CCGG	2 cut(s)	168, 825
BslI	CCNNNNNNNGG	4 cut(s)	498, 499, 708, 754
BsmAI	GTCTC	1 cut(s)	126
BsnI	GGCC	1 cut(s)	342
BsoBI	CYCGRG	1 cut(s)	834
Bsp1286I	GDGCHC	1 cut(s)	665
Bsp143I	GATC	2 cut(s)	15, 109
Bsp1720I	GCTNAGC	1 cut(s)	664
BspANI	GGCC	1 cut(s)	342
BspCNI	CTCAG	1 cut(s)	677
BspDI	ATCGAT	1 cut(s)	483
BspLI	GGNNCC	2 cut(s)	458, 734
BspMAI	CTGCAG	2 cut(s)	253, 580
BsrDI	GCAATG	2 cut(s)	69, 353
BsrI	ACTGG	1 cut(s)	315
BssECI	CCNNGG	1 cut(s)	640
BssMI	GATC	2 cut(s)	15, 109
BssT1I	CCWWGG	1 cut(s)	640
Bst4CI	ACNGT	2 cut(s)	200, 800
BstAPI	GCANNNNNTGC	1 cut(s)	550
BstC8I	GCNNGC	1 cut(s)	344
BstDEI	CTNAG	3 cut(s)	38, 664, 813
BstF5I	GGATG	1 cut(s)	228
BstKTI	GATC	2 cut(s)	18, 112
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	2 cut(s)	15, 109
BstMWI	GCNNNNNNNGC	2 cut(s)	550, 584
BstSCI	CCNGG	2 cut(s)	167, 824
BstSFI	CTRYAG	3 cut(s)	196, 249, 576
BstV1I	GCAGC	3 cut(s)	65, 556, 575
Bsu15I	ATCGAT	1 cut(s)	483
BsuRI	GGCC	1 cut(s)	342
BsuTUI	ATCGAT	1 cut(s)	483
BtsCI	GGATG	1 cut(s)	228
Cac8I	GCNNGC	1 cut(s)	344
ClaI	ATCGAT	1 cut(s)	483
CseI	GACGC	1 cut(s)	550
Csp6I	GTAC	3 cut(s)	187, 535, 817
CviAII	CATG	4 cut(s)	302, 467, 721, 784
CviQI	GTAC	3 cut(s)	187, 535, 817
DdeI	CTNAG	3 cut(s)	38, 664, 813
DpnI	GATC	2 cut(s)	17, 111
DpnII	GATC	2 cut(s)	15, 109
Eco130I	CCWWGG	1 cut(s)	640
Eco88I	CYCGRG	1 cut(s)	834
EcoT14I	CCWWGG	1 cut(s)	640
ErhI	CCWWGG	1 cut(s)	640
FaeI	CATG	4 cut(s)	305, 470, 724, 787
FatI	CATG	4 cut(s)	301, 466, 720, 783
FauNDI	CATATG	2 cut(s)	98, 216
FbaI	TGATCA	1 cut(s)	109
Fnu4HI	GCNGC	3 cut(s)	54, 545, 564
FokI	GGATG	1 cut(s)	235
Fsp4HI	GCNGC	3 cut(s)	54, 545, 564
FspBI	CTAG	2 cut(s)	288, 294
GluI	GCNGC	3 cut(s)	54, 545, 564
GsaI	CCCAGC	1 cut(s)	425
GsuI	CTGGAG	1 cut(s)	128
HaeIII	GGCC	1 cut(s)	342
HapII	CCGG	2 cut(s)	168, 825
HgaI	GACGC	1 cut(s)	550
Hin1II	CATG	4 cut(s)	305, 470, 724, 787
HinfI	GANTC	2 cut(s)	127, 555
HpaII	CCGG	2 cut(s)	168, 825
Hpy166II	GTNNAC	1 cut(s)	573
Hpy188I	TCNGA	4 cut(s)	126, 679, 852, 879
Hpy8I	GTNNAC	1 cut(s)	573
Hpy99I	CGWCG	1 cut(s)	544
HpyAV	CCTTC	3 cut(s)	332, 748, 831
HpyCH4III	ACNGT	2 cut(s)	200, 800
HpyCH4IV	ACGT	1 cut(s)	152
HpyCH4V	TGCA	4 cut(s)	53, 251, 358, 578
HpyF10VI	GCNNNNNNNGC	2 cut(s)	550, 584
HpyF3I	CTNAG	3 cut(s)	38, 664, 813
HpySE526I	ACGT	1 cut(s)	152
Hsp92II	CATG	4 cut(s)	305, 470, 724, 787
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	2 cut(s)	15, 109
LmnI	GCTCC	1 cut(s)	704
Lsp1109I	GCAGC	3 cut(s)	65, 556, 575
MaeI	CTAG	2 cut(s)	288, 294
MaeII	ACGT	1 cut(s)	152
MaeIII	GTNAC	2 cut(s)	259, 329
MalI	GATC	2 cut(s)	17, 111
MboI	GATC	2 cut(s)	15, 109
MboII	GAAGA	4 cut(s)	23, 202, 238, 698
MhlI	GDGCHC	1 cut(s)	665
MluCI	AATT	8 cut(s)	85, 176, 430, 447, 495, 511, 607, 739
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	2 cut(s)	213, 471
MseI	TTAA	1 cut(s)	405
MspA1I	CMGCKG	1 cut(s)	56
MspI	CCGG	2 cut(s)	168, 825
MspR9I	CCNGG	2 cut(s)	169, 826
MwoI	GCNNNNNNNGC	2 cut(s)	550, 584
NciI	CCSGG	2 cut(s)	169, 826
NdeI	CATATG	2 cut(s)	98, 216
NdeII	GATC	2 cut(s)	15, 109
NlaIII	CATG	4 cut(s)	305, 470, 724, 787
NlaIV	GGNNCC	2 cut(s)	458, 734
NmuCI	GTSAC	1 cut(s)	259
PfeI	GAWTC	2 cut(s)	127, 555
PflMI	CCANNNNNTGG	1 cut(s)	708
PkrI	GCNGC	3 cut(s)	55, 546, 565
PspFI	CCCAGC	1 cut(s)	421
PspN4I	GGNNCC	2 cut(s)	458, 734
PsrI	GAACNNNNNNTAC	2 cut(s)	779, 811
PstI	CTGCAG	2 cut(s)	253, 580
PvuII	CAGCTG	1 cut(s)	56
RsaI	GTAC	3 cut(s)	188, 536, 818
RsaNI	GTAC	3 cut(s)	187, 535, 817
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	3 cut(s)	54, 545, 564
Sau3AI	GATC	2 cut(s)	15, 109
ScrFI	CCNGG	2 cut(s)	169, 826
SduI	GDGCHC	1 cut(s)	665
SfcI	CTRYAG	3 cut(s)	196, 249, 576
Sse9I	AATT	8 cut(s)	85, 176, 430, 447, 495, 511, 607, 739
SspI	AATATT	1 cut(s)	884
SspMI	CTAG	2 cut(s)	288, 294
StyD4I	CCNGG	2 cut(s)	167, 824
StyI	CCWWGG	1 cut(s)	640
TaaI	ACNGT	2 cut(s)	200, 800
TaiI	ACGT	1 cut(s)	155
TaqI	TCGA	3 cut(s)	78, 483, 558
TasI	AATT	8 cut(s)	85, 176, 430, 447, 495, 511, 607, 739
TfiI	GAWTC	2 cut(s)	127, 555
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	3 cut(s)	53, 544, 563
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	5 cut(s)	85, 239, 321, 469, 800
TspGWI	ACGGA	1 cut(s)	522
Van91I	CCANNNNNTGG	1 cut(s)	708
XapI	RAATTY	4 cut(s)	176, 430, 447, 739
XspI	CTAG	2 cut(s)	288, 294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.