Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001964

Physical Location & Seq

Genomic Coordinates Reverse (-)

46406883 .. 46408544

Gene Structure 1662 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G023760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCTTTTTCAGTGGAGGGTTTCGTTGTGTTTTTTCTATTTTGTGGTGTGATGCTTGCAAATGGTGATGTTGGCTTCGATGAAAATTATCATGTCATATGGGGTTTTGATCATGCCTTGTATCAGGATGGAGGGACAGGGATGCAGATTTACTTGGATCAATATACGGGGGCTGGGTTTCAATCCAAGCAATGGTTCGGTTCTGGGTGGTTTCATATGAGGATCAAGGTACCAGTGAGGGATTGTGCTGGAGTTGTCCTAGCTTTTTATGGTGATCGTAACCAGGATGAGTTAGACTTTGAGTTCTTGGGTAATAGAGAAGGCAAGCCAATCACATTGCAGACAAATGTGATTACAAATGGTGATAACTTCAGAGAGCAAAGGACACTTCTTTGGTTTGACCCAACAGCAGATTTTCATGACTACAAGATTCTTTGGAACCATCATCAAGTTGTCTTTTATATCGACGATACCCCCATCAGGGTTTTTAGGAACAACAAAAAAATTAAGGTTCCCTATCTAACGCGGCCGATGGTAATAGATGCAAGCATATGGGATGGATCAGATTGGGCAACTGATGGAGGCCAAACAAAGATCGACTATAACCATGCACCATTTAGAGCTTATTTCCAAGGGTTTGACATGAATGCCTGCTCACTGGACAAGTCCAAGACCGATGTCTCGGAATGTTATGCTACAAAATATTTGTGGAACCACAGGGTCTATTGGCAACTAAACCCAACGGAACAAGAAGCATATGACAGGGTGAGAAGAGAATATATGAACTATGACTATTGTACTGATACGCAAAGGTTCCACACGCCTCCCCGAGAGTGCACCAGTGATAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009832 GO:0009987 GO:0010228 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0022414 GO:0030243 GO:0032501 GO:0032502 GO:0042546 GO:0043170 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0046527 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051273 GO:0061458 GO:0071554 GO:0071669 GO:0071704 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

283

Amino Acids

33.21

Weight (kDa)

5.22

Isoelectric Point (pI)

34.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	27 - 202	5.5e-51	Glycosyl hydrolases family 16
XET_C	PF06955	234 - 279	2.3e-15	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25050 AT4G13080 AT4G13090
fragaria_vesca	FvH4_2g18760 FvH4_2g18761 FvH4_3g26030 FvH4_3g26030
malus_domestica	MD03G1093100.v1.1 MD05G1173300.v1.1 MD05G1173400.v1.1 MD05G1173600.v1.1
prunus_persica	Prupe.8G200900_v2.0.a1 Prupe.8G200900_v2.0.a1 Prupe.8G200900_v2.0.a1 Prupe.8G201000_v2.0.a1
pyrus_communis	pycom05g16020 pycom05g16030 pycom05g16040
rosa_chinensis	RchiOBHm_Chr5g0047321 RchiOBHm_Chr6g0284451 RchiOBHm_Chr6g0284461 RchiOBHm_Chr6g0284491
rosa_laevigata	RLG00000012742 RLG00000012743
rosa_roxburghii	Rroxscaffold_1G00034030 Rroxscaffold_7G00184670 Rroxscaffold_7G00184680 Rroxscaffold_7G00184690
rosa_rugosa	Rorug05G0235900 Rorug06G0163800
rosa_samantha	Rh5BG323400 Rh5CG350600 Rh5DG334400 Rh6AG276600 Rh6AG276900 Rh6BG276600 Rh6BG276700 Rh6CG278600 Rh6CG278700 Rh6CG278900 Rh6DG271000 Rh6DG271100 Rh6DG271300
rosa_wichuraiana	Rw6G023760 Rw6G023770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	229
AccB1I	GGYRCC	1 cut(s)	229
AccB7I	CCANNNNNTGG	1 cut(s)	192
AccII	CGCG	1 cut(s)	526
AciI	CCGC	1 cut(s)	526
AclWI	GGATC	3 cut(s)	165, 230, 568
AcoI	YGGCCR	1 cut(s)	527
AcuI	CTGAAG	1 cut(s)	355
AfaI	GTAC	2 cut(s)	231, 799
AfiI	CCNNNNNNNGG	3 cut(s)	192, 480, 481
AgsI	TTSAA	1 cut(s)	182
AjnI	CCWGG	1 cut(s)	282
AjuI	GAANNNNNNNTTGG	2 cut(s)	179, 211
AluBI	AGCT	3 cut(s)	263, 623, 849
AluI	AGCT	3 cut(s)	263, 623, 849
Alw21I	GWGCWC	1 cut(s)	839
Alw26I	GTCTC	1 cut(s)	685
Alw44I	GTGCAC	1 cut(s)	835
AlwI	GGATC	3 cut(s)	165, 230, 568
Ama87I	CYCGRG	1 cut(s)	828
AoxI	GGCC	2 cut(s)	527, 583
ApaLI	GTGCAC	1 cut(s)	835
Asp718I	GGTACC	1 cut(s)	229
AsuHPI	GGTGA	4 cut(s)	77, 284, 374, 778
AvaI	CYCGRG	1 cut(s)	828
BaeGI	GKGCMC	1 cut(s)	839
BanI	GGYRCC	1 cut(s)	229
Bbv12I	GWGCWC	1 cut(s)	839
BccI	CCATC	6 cut(s)	122, 450, 485, 526, 551, 572
BciT130I	CCWGG	1 cut(s)	284
BclI	TGATCA	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	685
BfaI	CTAG	2 cut(s)	260, 850
BisI	GCNGC	1 cut(s)	527
BlsI	GCNGC	1 cut(s)	528
Bme1390I	CCNGG	1 cut(s)	284
BmeT110I	CYCGRG	1 cut(s)	828
BmiI	GGNNCC	5 cut(s)	231, 440, 513, 713, 815
BmrFI	CCNGG	1 cut(s)	284
BmsI	GCATC	3 cut(s)	42, 132, 532
BoxI	GACNNNNGTC	1 cut(s)	677
BpmI	CTGGAG	1 cut(s)	270
BsaJI	CCNNGG	1 cut(s)	631
Bsc4I	CCNNNNNNNGG	3 cut(s)	192, 480, 481
Bse1I	ACTGG	3 cut(s)	233, 663, 840
Bse3DI	GCAATG	2 cut(s)	197, 335
BseBI	CCWGG	1 cut(s)	284
BseDI	CCNNGG	1 cut(s)	631
BseGI	GGATG	4 cut(s)	133, 147, 292, 562
BseLI	CCNNNNNNNGG	3 cut(s)	192, 480, 481
BseMI	GCAATG	2 cut(s)	197, 335
BseNI	ACTGG	3 cut(s)	233, 663, 840
BseSI	GKGCMC	1 cut(s)	839
BseX3I	CGGCCG	1 cut(s)	527
BseYI	CCCAGC	1 cut(s)	173
Bsh1236I	CGCG	1 cut(s)	526
Bsh1285I	CGRYCG	1 cut(s)	530
BshFI	GGCC	2 cut(s)	529, 585
BshNI	GGYRCC	1 cut(s)	229
BsiEI	CGRYCG	1 cut(s)	530
BsiHKAI	GWGCWC	1 cut(s)	839
BsiHKCI	CYCGRG	1 cut(s)	828
BslFI	GGGAC	1 cut(s)	148
BslI	CCNNNNNNNGG	3 cut(s)	192, 480, 481
BsmAI	GTCTC	1 cut(s)	685
BsmFI	GGGAC	1 cut(s)	148
BsmI	GAATGC	1 cut(s)	652
BsnI	GGCC	2 cut(s)	529, 585
BsoBI	CYCGRG	1 cut(s)	828
Bsp1286I	GDGCHC	1 cut(s)	839
Bsp143I	GATC	6 cut(s)	109, 157, 222, 274, 560, 594
BspACI	CCGC	1 cut(s)	526
BspANI	GGCC	2 cut(s)	529, 585
BspFNI	CGCG	1 cut(s)	526
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	5 cut(s)	231, 440, 513, 713, 815
BspPI	GGATC	3 cut(s)	165, 230, 568
BspT107I	GGYRCC	1 cut(s)	229
BsrDI	GCAATG	2 cut(s)	197, 335
BsrI	ACTGG	3 cut(s)	233, 663, 840
BssECI	CCNNGG	1 cut(s)	631
BssMI	GATC	6 cut(s)	109, 157, 222, 274, 560, 594
BssT1I	CCWWGG	1 cut(s)	631
Bst2UI	CCWGG	1 cut(s)	284
Bst6I	CTCTTC	1 cut(s)	766
BstC8I	GCNNGC	4 cut(s)	57, 326, 547, 652
BstF5I	GGATG	4 cut(s)	133, 147, 292, 562
BstFNI	CGCG	1 cut(s)	526
BstKTI	GATC	6 cut(s)	112, 160, 225, 277, 563, 597
BstMAI	GTCTC	1 cut(s)	685
BstMBI	GATC	6 cut(s)	109, 157, 222, 274, 560, 594
BstMCI	CGRYCG	1 cut(s)	530
BstNI	CCWGG	1 cut(s)	284
BstPAI	GACNNNNGTC	1 cut(s)	677
BstSCI	CCNGG	1 cut(s)	282
BstSLI	GKGCMC	1 cut(s)	839
BstUI	CGCG	1 cut(s)	526
BstZI	CGGCCG	1 cut(s)	527
BsuRI	GGCC	2 cut(s)	529, 585
BtsCI	GGATG	4 cut(s)	133, 147, 292, 562
BtsIMutI	CAGTG	4 cut(s)	18, 240, 656, 847
Cac8I	GCNNGC	4 cut(s)	57, 326, 547, 652
CciI	TCATGA	1 cut(s)	418
Csp6I	GTAC	2 cut(s)	230, 798
CviAII	CATG	5 cut(s)	92, 113, 419, 608, 643
CviJI	RGCY	9 cut(s)	5, 75, 173, 263, 328, 529, 585, 623, 849
CviKI_1	RGCY	9 cut(s)	5, 75, 173, 263, 328, 529, 585, 623, 849
CviQI	GTAC	2 cut(s)	230, 798
DpnI	GATC	6 cut(s)	111, 159, 224, 276, 562, 596
DpnII	GATC	6 cut(s)	109, 157, 222, 274, 560, 594
EaeI	YGGCCR	1 cut(s)	527
EagI	CGGCCG	1 cut(s)	527
Eam1104I	CTCTTC	1 cut(s)	766
EarI	CTCTTC	1 cut(s)	766
EclXI	CGGCCG	1 cut(s)	527
Eco130I	CCWWGG	1 cut(s)	631
Eco52I	CGGCCG	1 cut(s)	527
Eco57I	CTGAAG	1 cut(s)	355
Eco88I	CYCGRG	1 cut(s)	828
EcoRII	CCWGG	1 cut(s)	282
EcoT14I	CCWWGG	1 cut(s)	631
ErhI	CCWWGG	1 cut(s)	631
FaeI	CATG	5 cut(s)	95, 116, 422, 611, 646
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	5 cut(s)	91, 112, 418, 607, 642
FauNDI	CATATG	4 cut(s)	98, 216, 551, 757
FbaI	TGATCA	1 cut(s)	109
Fnu4HI	GCNGC	1 cut(s)	527
FokI	GGATG	4 cut(s)	140, 154, 299, 569
Fsp4HI	GCNGC	1 cut(s)	527
FspBI	CTAG	2 cut(s)	260, 850
GluI	GCNGC	1 cut(s)	527
GsaI	CCCAGC	1 cut(s)	177
GsuI	CTGGAG	1 cut(s)	270
HaeIII	GGCC	2 cut(s)	529, 585
Hin1II	CATG	5 cut(s)	95, 116, 422, 611, 646
HinfI	GANTC	1 cut(s)	430
HphI	GGTGA	4 cut(s)	77, 284, 374, 778
Hpy166II	GTNNAC	1 cut(s)	837
Hpy188I	TCNGA	3 cut(s)	374, 565, 685
Hpy188III	TCNNGA	2 cut(s)	125, 419
Hpy8I	GTNNAC	1 cut(s)	837
Hpy99I	CGWCG	1 cut(s)	470
HpyAV	CCTTC	1 cut(s)	314
HpyCH4V	TGCA	6 cut(s)	59, 145, 340, 545, 611, 837
Hsp92II	CATG	5 cut(s)	95, 116, 422, 611, 646
KpnI	GGTACC	1 cut(s)	233
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	6 cut(s)	109, 157, 222, 274, 560, 594
LweI	GCATC	3 cut(s)	42, 132, 532
MaeI	CTAG	2 cut(s)	260, 850
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	6 cut(s)	111, 159, 224, 276, 562, 596
MboI	GATC	6 cut(s)	109, 157, 222, 274, 560, 594
MboII	GAAGA	1 cut(s)	783
MhlI	GDGCHC	1 cut(s)	839
MluCI	AATT	2 cut(s)	85, 504
MnlI	CCTC	6 cut(s)	10, 125, 213, 231, 575, 834
MseI	TTAA	1 cut(s)	507
MspR9I	CCNGG	1 cut(s)	284
Mva1269I	GAATGC	1 cut(s)	652
MvaI	CCWGG	1 cut(s)	284
MvnI	CGCG	1 cut(s)	526
NdeI	CATATG	4 cut(s)	98, 216, 551, 757
NdeII	GATC	6 cut(s)	109, 157, 222, 274, 560, 594
NlaIII	CATG	5 cut(s)	95, 116, 422, 611, 646
NlaIV	GGNNCC	5 cut(s)	231, 440, 513, 713, 815
PagI	TCATGA	1 cut(s)	418
PctI	GAATGC	1 cut(s)	652
PfeI	GAWTC	1 cut(s)	430
PflMI	CCANNNNNTGG	1 cut(s)	192
PkrI	GCNGC	1 cut(s)	528
PshAI	GACNNNNGTC	1 cut(s)	677
Psp6I	CCWGG	1 cut(s)	282
PspFI	CCCAGC	1 cut(s)	173
PspGI	CCWGG	1 cut(s)	282
PspN4I	GGNNCC	5 cut(s)	231, 440, 513, 713, 815
RsaI	GTAC	2 cut(s)	231, 799
RsaNI	GTAC	2 cut(s)	230, 798
SaqAI	TTAA	1 cut(s)	507
SatI	GCNGC	1 cut(s)	527
Sau3AI	GATC	6 cut(s)	109, 157, 222, 274, 560, 594
ScrFI	CCNGG	1 cut(s)	284
SduI	GDGCHC	1 cut(s)	839
SetI	ASST	6 cut(s)	231, 265, 513, 625, 815, 851
SfaNI	GCATC	3 cut(s)	42, 132, 532
Sse9I	AATT	2 cut(s)	85, 504
SsiI	CCGC	1 cut(s)	526
SspI	AATATT	1 cut(s)	704
SspMI	CTAG	2 cut(s)	260, 850
StyD4I	CCNGG	1 cut(s)	282
StyI	CCWWGG	1 cut(s)	631
TaqI	TCGA	3 cut(s)	78, 465, 597
TaqII	GACCGA	1 cut(s)	689
TasI	AATT	2 cut(s)	85, 504
TatI	WGTACW	1 cut(s)	797
TauI	GCSGC	1 cut(s)	529
TfiI	GAWTC	1 cut(s)	430
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TscAI	CASTG	4 cut(s)	18, 240, 663, 847
TspDTI	ATGAA	5 cut(s)	96, 203, 407, 659, 797
TspGWI	ACGGA	1 cut(s)	758
TspRI	CASTG	4 cut(s)	18, 240, 663, 847
Van91I	CCANNNNNTGG	1 cut(s)	192
VneI	GTGCAC	1 cut(s)	835
XspI	CTAG	2 cut(s)	260, 850

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.