Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001964

Physical Location & Seq

Genomic Coordinates Reverse (-)

16004163 .. 16006315

Gene Structure 2153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g18760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGCTTTTCCGGCGGAGGGTTTCGTTGTGTTCTTTCTATTTTGTGGTGTGATGCTTGCAAATGGTGAGGTTGGCTTTGATGAAAATTATCAAGTCACATGGGGTTTTGATCATGCCTTGCGTGAGAATGGAGGGAGACAGATGCAGATTTACTTGGATCAATATACGGGGGCTGGGTTTGAATCCAAGCAATGGTTCGGCTCTGGGTGGTTTAATCTGAGGATCAAGGTACCAGTGAGGGACTGTGCTGGAGTTGTCCTAGCTTTTTATCTGAGATCAGAGGGTAGTCACAACCAGGATGAGCTAGACTTCGAGTTCTTGGGAAATAGAGAAGGCAAGCCAATCACCTTGCAGACAAATGTGATTACAAACGGTCAAAACTACAGAGAGCAAAGAACACATTTTTGGTTTGACCCAACTGCAGATTTTCATGACTACAAGATTCTTTGGAACCATCATCAAGTTGTCTTTTATATCGACAATATCCCCATCAGGGTTTTCAGGAACAACAAAAAGATCAAGGTTGCCTATCTAACGCGGCCGATGGTAATAGCCGTAAGCATATGGGATGGATCAAGTTGGGCAACTGATGGAGGCCAAACAAAGATCGACTATAACCGTGCACCATTTAGAGCTTATTTCCAGAAGTTCGACATGAATGCCTGCATAGTAGACAGGTCCAAGCCCGATGTTGGGGAATTTTGTTATGCTACCAAATATTTGTGGAACCATAGGGTTCATCGGCAACTAAACTCAACCGATCTAGAAGCATATAACAGGGTGAGAAGAGAATATATGAACTATGACTATTGTACTGATACGCAAAGGTTCCAAACATTTCCCAGAGAGTGTACCGTACCAGTGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009832 GO:0009987 GO:0010228 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0022414 GO:0030243 GO:0032501 GO:0032502 GO:0042546 GO:0043170 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0046527 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051273 GO:0061458 GO:0071554 GO:0071669 GO:0071704 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

290

Amino Acids

34.03

Weight (kDa)

6.71

Isoelectric Point (pI)

36.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	27 - 206	7.4e-54	Glycosyl hydrolases family 16
XET_C	PF06955	239 - 284	1.9e-14	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25050 AT4G13080 AT4G13090
fragaria_vesca	FvH4_2g18760 FvH4_2g18761 FvH4_3g26030 FvH4_3g26030
malus_domestica	MD03G1093100.v1.1 MD05G1173300.v1.1 MD05G1173400.v1.1 MD05G1173600.v1.1
prunus_persica	Prupe.8G200900_v2.0.a1 Prupe.8G200900_v2.0.a1 Prupe.8G200900_v2.0.a1 Prupe.8G201000_v2.0.a1
pyrus_communis	pycom05g16020 pycom05g16030 pycom05g16040
rosa_chinensis	RchiOBHm_Chr5g0047321 RchiOBHm_Chr6g0284451 RchiOBHm_Chr6g0284461 RchiOBHm_Chr6g0284491
rosa_laevigata	RLG00000012742 RLG00000012743
rosa_roxburghii	Rroxscaffold_1G00034030 Rroxscaffold_7G00184670 Rroxscaffold_7G00184680 Rroxscaffold_7G00184690
rosa_rugosa	Rorug05G0235900 Rorug06G0163800
rosa_samantha	Rh5BG323400 Rh5CG350600 Rh5DG334400 Rh6AG276600 Rh6AG276900 Rh6BG276600 Rh6BG276700 Rh6CG278600 Rh6CG278700 Rh6CG278900 Rh6DG271000 Rh6DG271100 Rh6DG271300
rosa_wichuraiana	Rw6G023760 Rw6G023770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	229
AccB1I	GGYRCC	1 cut(s)	229
AccB7I	CCANNNNNTGG	1 cut(s)	192
AccI	GTMKAC	1 cut(s)	672
AccII	CGCG	1 cut(s)	538
AciI	CCGC	2 cut(s)	14, 538
AclWI	GGATC	3 cut(s)	165, 230, 580
AcoI	YGGCCR	1 cut(s)	539
AcsI	RAATTY	1 cut(s)	698
AfaI	GTAC	4 cut(s)	231, 814, 853, 858
AfiI	CCNNNNNNNGG	5 cut(s)	17, 192, 493, 692, 693
AgsI	TTSAA	1 cut(s)	182
AjnI	CCWGG	1 cut(s)	294
AjuI	GAANNNNNNNTTGG	4 cut(s)	179, 211, 388, 420
AluBI	AGCT	3 cut(s)	263, 304, 635
AluI	AGCT	3 cut(s)	263, 304, 635
Alw21I	GWGCWC	1 cut(s)	625
Alw26I	GTCTC	1 cut(s)	130
Alw44I	GTGCAC	1 cut(s)	621
AlwI	GGATC	3 cut(s)	165, 230, 580
AoxI	GGCC	2 cut(s)	539, 595
ApaLI	GTGCAC	1 cut(s)	621
ApoI	RAATTY	1 cut(s)	698
Asp718I	GGTACC	1 cut(s)	229
AspS9I	GGNCC	1 cut(s)	678
AsuHPI	GGTGA	3 cut(s)	77, 337, 793
AvaII	GGWCC	1 cut(s)	678
BaeGI	GKGCMC	1 cut(s)	625
BanI	GGYRCC	1 cut(s)	229
Bbv12I	GWGCWC	1 cut(s)	625
BccI	CCATC	5 cut(s)	462, 497, 538, 563, 584
BceAI	ACGGC	1 cut(s)	539
BcgI	CGANNNNNNTGC	2 cut(s)	641, 675
BciT130I	CCWGG	1 cut(s)	296
BclI	TGATCA	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	130
BfaI	CTAG	3 cut(s)	260, 305, 764
BfmI	CTRYAG	2 cut(s)	382, 420
BisI	GCNGC	1 cut(s)	539
BlsI	GCNGC	1 cut(s)	540
Bme1390I	CCNGG	1 cut(s)	296
Bme18I	GGWCC	1 cut(s)	678
BmgT120I	GGNCC	1 cut(s)	678
BmiI	GGNNCC	4 cut(s)	231, 452, 728, 830
BmrFI	CCNGG	1 cut(s)	296
BmsI	GCATC	2 cut(s)	42, 132
BpmI	CTGGAG	1 cut(s)	270
Bsc4I	CCNNNNNNNGG	5 cut(s)	17, 192, 493, 692, 693
Bse1I	ACTGG	2 cut(s)	233, 860
Bse3DI	GCAATG	1 cut(s)	197
BseBI	CCWGG	1 cut(s)	296
BseGI	GGATG	2 cut(s)	304, 574
BseLI	CCNNNNNNNGG	5 cut(s)	17, 192, 493, 692, 693
BseMI	GCAATG	1 cut(s)	197
BseMII	CTCAG	2 cut(s)	209, 263
BseNI	ACTGG	2 cut(s)	233, 860
BseSI	GKGCMC	1 cut(s)	625
BseX3I	CGGCCG	1 cut(s)	539
BseYI	CCCAGC	1 cut(s)	173
Bsh1236I	CGCG	1 cut(s)	538
Bsh1285I	CGRYCG	1 cut(s)	542
BshFI	GGCC	2 cut(s)	541, 597
BshNI	GGYRCC	1 cut(s)	229
BsiEI	CGRYCG	1 cut(s)	542
BsiHKAI	GWGCWC	1 cut(s)	625
BsiSI	CCGG	1 cut(s)	11
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	5 cut(s)	17, 192, 493, 692, 693
BsmAI	GTCTC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	254
BsmI	GAATGC	1 cut(s)	664
BsnI	GGCC	2 cut(s)	541, 597
Bsp1286I	GDGCHC	1 cut(s)	625
Bsp143I	GATC	8 cut(s)	109, 157, 222, 275, 516, 572, 606, 760
BspACI	CCGC	2 cut(s)	14, 538
BspANI	GGCC	2 cut(s)	541, 597
BspCNI	CTCAG	2 cut(s)	210, 264
BspFNI	CGCG	1 cut(s)	538
BspHI	TCATGA	1 cut(s)	430
BspLI	GGNNCC	4 cut(s)	231, 452, 728, 830
BspMAI	CTGCAG	1 cut(s)	424
BspPI	GGATC	3 cut(s)	165, 230, 580
BspT107I	GGYRCC	1 cut(s)	229
BsrDI	GCAATG	1 cut(s)	197
BsrI	ACTGG	2 cut(s)	233, 860
BssMI	GATC	8 cut(s)	109, 157, 222, 275, 516, 572, 606, 760
Bst2UI	CCWGG	1 cut(s)	296
Bst4CI	ACNGT	4 cut(s)	245, 374, 620, 856
Bst6I	CTCTTC	1 cut(s)	781
BstC8I	GCNNGC	3 cut(s)	57, 338, 664
BstDEI	CTNAG	2 cut(s)	218, 272
BstF5I	GGATG	2 cut(s)	304, 574
BstFNI	CGCG	1 cut(s)	538
BstKTI	GATC	8 cut(s)	112, 160, 225, 278, 519, 575, 609, 763
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	8 cut(s)	109, 157, 222, 275, 516, 572, 606, 760
BstMCI	CGRYCG	1 cut(s)	542
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	296
BstSCI	CCNGG	1 cut(s)	294
BstSFI	CTRYAG	2 cut(s)	382, 420
BstSLI	GKGCMC	1 cut(s)	625
BstUI	CGCG	1 cut(s)	538
BstZI	CGGCCG	1 cut(s)	539
BsuRI	GGCC	2 cut(s)	541, 597
BtsCI	GGATG	2 cut(s)	304, 574
BtsIMutI	CAGTG	2 cut(s)	240, 867
Cac8I	GCNNGC	3 cut(s)	57, 338, 664
CciI	TCATGA	1 cut(s)	430
Cfr13I	GGNCC	1 cut(s)	678
Csp6I	GTAC	4 cut(s)	230, 813, 852, 857
CviAII	CATG	4 cut(s)	99, 113, 431, 655
CviQI	GTAC	4 cut(s)	230, 813, 852, 857
DdeI	CTNAG	2 cut(s)	218, 272
DpnI	GATC	8 cut(s)	111, 159, 224, 277, 518, 574, 608, 762
DpnII	GATC	8 cut(s)	109, 157, 222, 275, 516, 572, 606, 760
EaeI	YGGCCR	1 cut(s)	539
EagI	CGGCCG	1 cut(s)	539
Eam1104I	CTCTTC	1 cut(s)	781
EarI	CTCTTC	1 cut(s)	781
EciI	GGCGGA	1 cut(s)	29
EclXI	CGGCCG	1 cut(s)	539
Eco47I	GGWCC	1 cut(s)	678
Eco52I	CGGCCG	1 cut(s)	539
EcoRII	CCWGG	1 cut(s)	294
FaeI	CATG	4 cut(s)	102, 116, 434, 658
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	4 cut(s)	98, 112, 430, 654
FauNDI	CATATG	1 cut(s)	563
FbaI	TGATCA	1 cut(s)	109
FblI	GTMKAC	1 cut(s)	672
Fnu4HI	GCNGC	1 cut(s)	539
FokI	GGATG	2 cut(s)	311, 581
Fsp4HI	GCNGC	1 cut(s)	539
FspBI	CTAG	3 cut(s)	260, 305, 764
GluI	GCNGC	1 cut(s)	539
GsaI	CCCAGC	1 cut(s)	177
GsuI	CTGGAG	1 cut(s)	270
HaeIII	GGCC	2 cut(s)	541, 597
HapII	CCGG	1 cut(s)	11
Hin1II	CATG	4 cut(s)	102, 116, 434, 658
HinfI	GANTC	2 cut(s)	182, 442
HpaII	CCGG	1 cut(s)	11
HphI	GGTGA	3 cut(s)	77, 337, 793
Hpy166II	GTNNAC	3 cut(s)	623, 673, 852
Hpy188I	TCNGA	3 cut(s)	219, 273, 280
Hpy188III	TCNNGA	4 cut(s)	431, 502, 643, 764
Hpy8I	GTNNAC	3 cut(s)	623, 673, 852
HpyAV	CCTTC	1 cut(s)	326
HpyCH4III	ACNGT	4 cut(s)	245, 374, 620, 856
HpyCH4V	TGCA	6 cut(s)	59, 145, 352, 422, 623, 666
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	218, 272
Hsp92II	CATG	4 cut(s)	102, 116, 434, 658
KpnI	GGTACC	1 cut(s)	233
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	8 cut(s)	109, 157, 222, 275, 516, 572, 606, 760
LweI	GCATC	2 cut(s)	42, 132
MaeI	CTAG	3 cut(s)	260, 305, 764
MaeIII	GTNAC	2 cut(s)	94, 287
MalI	GATC	8 cut(s)	111, 159, 224, 277, 518, 574, 608, 762
MboI	GATC	8 cut(s)	109, 157, 222, 275, 516, 572, 606, 760
MboII	GAAGA	1 cut(s)	798
MhlI	GDGCHC	1 cut(s)	625
MluCI	AATT	2 cut(s)	85, 698
MnlI	CCTC	7 cut(s)	10, 61, 125, 213, 231, 274, 587
MseI	TTAA	1 cut(s)	213
MspI	CCGG	1 cut(s)	11
MspR9I	CCNGG	1 cut(s)	296
Mva1269I	GAATGC	1 cut(s)	664
MvaI	CCWGG	1 cut(s)	296
MvnI	CGCG	1 cut(s)	538
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeI	CATATG	1 cut(s)	563
NdeII	GATC	8 cut(s)	109, 157, 222, 275, 516, 572, 606, 760
NlaIII	CATG	4 cut(s)	102, 116, 434, 658
NlaIV	GGNNCC	4 cut(s)	231, 452, 728, 830
NmuCI	GTSAC	2 cut(s)	94, 287
PagI	TCATGA	1 cut(s)	430
PctI	GAATGC	1 cut(s)	664
PfeI	GAWTC	2 cut(s)	182, 442
PflMI	CCANNNNNTGG	1 cut(s)	192
PkrI	GCNGC	1 cut(s)	540
Psp6I	CCWGG	1 cut(s)	294
PspFI	CCCAGC	1 cut(s)	173
PspGI	CCWGG	1 cut(s)	294
PspN4I	GGNNCC	4 cut(s)	231, 452, 728, 830
PspPI	GGNCC	1 cut(s)	678
PstI	CTGCAG	1 cut(s)	424
RsaI	GTAC	4 cut(s)	231, 814, 853, 858
RsaNI	GTAC	4 cut(s)	230, 813, 852, 857
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	1 cut(s)	539
Sau3AI	GATC	8 cut(s)	109, 157, 222, 275, 516, 572, 606, 760
Sau96I	GGNCC	1 cut(s)	678
ScrFI	CCNGG	1 cut(s)	296
SduI	GDGCHC	1 cut(s)	625
SetI	ASST	9 cut(s)	72, 231, 265, 306, 350, 525, 637, 680, 830
SfaNI	GCATC	2 cut(s)	42, 132
SfcI	CTRYAG	2 cut(s)	382, 420
SinI	GGWCC	1 cut(s)	678
Sse9I	AATT	2 cut(s)	85, 698
SsiI	CCGC	2 cut(s)	14, 538
SspI	AATATT	1 cut(s)	719
SspMI	CTAG	3 cut(s)	260, 305, 764
StyD4I	CCNGG	1 cut(s)	294
TaaI	ACNGT	4 cut(s)	245, 374, 620, 856
TaqI	TCGA	4 cut(s)	312, 477, 609, 651
TasI	AATT	2 cut(s)	85, 698
TatI	WGTACW	1 cut(s)	812
TauI	GCSGC	1 cut(s)	541
TfiI	GAWTC	2 cut(s)	182, 442
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	2 cut(s)	240, 867
TseFI	GTSAC	2 cut(s)	94, 287
Tsp45I	GTSAC	2 cut(s)	94, 287
TspDTI	ATGAA	5 cut(s)	96, 419, 671, 728, 812
TspRI	CASTG	2 cut(s)	240, 867
Van91I	CCANNNNNTGG	1 cut(s)	192
VneI	GTGCAC	1 cut(s)	621
VpaK11BI	GGWCC	1 cut(s)	678
XapI	RAATTY	1 cut(s)	698
XbaI	TCTAGA	1 cut(s)	763
XmiI	GTMKAC	1 cut(s)	672
XspI	CTAG	3 cut(s)	260, 305, 764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.