Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001964

Physical Location & Seq

Genomic Coordinates Forward (+)

21919216 .. 21920848

Gene Structure 1633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012742

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGCTTCTTCAGTGAAGGGTTTTTGTATGTTTTCTTTGCTTTTTGTTTGTGGTGGGATGCTTGCAAATGGGGACACTGGCTTCGACGAAAATTATAATGTCTCATGGGGATTTGACCATGCCTTGCGTACGGATGAAGGGAGACAAATGCAGATCTACATGGATAAATATTCGGGCGCAGGGTTTAAATCCATTAAATGGTTTGGTTCTGGGATCTTTCATATGAGGATCAAGATACCAGTGAGGGATTCTGCTGGAGTTGTCACTGCTTTTTATCTGACAACAGAAGGTGATCGGCAGGATGAGATGGACTTTGAGTTCTTGGGTAATAGAGAAGGCAAGCCAATCGTATTGCAGACCAATGTGATTACTAATGGTGATAATAGAGAGCAAAGGATTCTTTTTTGGTTTGATCCCACATCAGATTTTCATGACTACAAAATTCTTTGGAATCAGCATCAAATTGTTTTTTATGTCGACGATAAACCAATTAGGGTTTACAAGAACAATGAAAATATTAGGGTTCCCTACCCATCACGGCCAATGATAATAGACGCAAGCATATGGGATGGATCAAATTGGGCAACTGATGGAGGCCAAACAAAGATCGACTGGAACCATGCACCATTTAGAGCTTACTTCCAAGGGTTTAACATAAGTTCTGGCTGTACACTAGATAAGTCCAGGACCGATGTTAAGGAATGTTATGCATCCACATACTTGTGGAACCATCAGGAGTATTGGCAACTAAACTCAACCGAACAACAAGCATATGAGAAGGTGAGAAAGGAACAGATGAACTATGACTACTGTACTGATTCAACAAGGTTCCCTACACCTCCCCCAGAGTGCAGTAGTAATACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009832 GO:0009987 GO:0010228 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0022414 GO:0030243 GO:0032501 GO:0032502 GO:0042546 GO:0043170 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0046527 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051273 GO:0061458 GO:0071554 GO:0071669 GO:0071704 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

289

Amino Acids

33.45

Weight (kDa)

5.29

Isoelectric Point (pI)

37.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	29 - 206	1.1e-56	Glycosyl hydrolases family 16
XET_C	PF06955	239 - 284	2.4e-15	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25050 AT4G13080 AT4G13090
fragaria_vesca	FvH4_2g18760 FvH4_2g18761 FvH4_3g26030 FvH4_3g26030
malus_domestica	MD03G1093100.v1.1 MD05G1173300.v1.1 MD05G1173400.v1.1 MD05G1173600.v1.1
prunus_persica	Prupe.8G200900_v2.0.a1 Prupe.8G200900_v2.0.a1 Prupe.8G200900_v2.0.a1 Prupe.8G201000_v2.0.a1
pyrus_communis	pycom05g16020 pycom05g16030 pycom05g16040
rosa_chinensis	RchiOBHm_Chr5g0047321 RchiOBHm_Chr6g0284451 RchiOBHm_Chr6g0284461 RchiOBHm_Chr6g0284491
rosa_laevigata	RLG00000012742 RLG00000012743
rosa_roxburghii	Rroxscaffold_1G00034030 Rroxscaffold_7G00184670 Rroxscaffold_7G00184680 Rroxscaffold_7G00184690
rosa_rugosa	Rorug05G0235900 Rorug06G0163800
rosa_samantha	Rh5BG323400 Rh5CG350600 Rh5DG334400 Rh6AG276600 Rh6AG276900 Rh6BG276600 Rh6BG276700 Rh6CG278600 Rh6CG278700 Rh6CG278900 Rh6DG271000 Rh6DG271100 Rh6DG271300
rosa_wichuraiana	Rw6G023760 Rw6G023770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	96
AccB7I	CCANNNNNTGG	1 cut(s)	198
AccI	GTMKAC	1 cut(s)	477
AclWI	GGATC	4 cut(s)	221, 236, 407, 580
AcoI	YGGCCR	1 cut(s)	539
AcsI	RAATTY	1 cut(s)	441
AfaI	GTAC	3 cut(s)	130, 670, 814
AfiI	CCNNNNNNNGG	1 cut(s)	198
AgsI	TTSAA	1 cut(s)	822
AjnI	CCWGG	1 cut(s)	683
AloI	GAACNNNNNNTCC	2 cut(s)	302, 334
AluBI	AGCT	1 cut(s)	635
AluI	AGCT	1 cut(s)	635
Alw26I	GTCTC	2 cut(s)	106, 136
AlwI	GGATC	4 cut(s)	221, 236, 407, 580
AoxI	GGCC	2 cut(s)	539, 595
ApoI	RAATTY	1 cut(s)	441
ArsI	GACNNNNNNTTYG	2 cut(s)	65, 97
AspLEI	GCGC	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	687
AsuHPI	GGTGA	3 cut(s)	302, 389, 793
AvaII	GGWCC	1 cut(s)	687
BccI	CCATC	5 cut(s)	301, 541, 563, 584, 738
BceAI	ACGGC	1 cut(s)	554
BcgI	CGANNNNNNTGC	2 cut(s)	328, 362
BciT130I	CCWGG	1 cut(s)	685
BcoDI	GTCTC	2 cut(s)	106, 136
BfaI	CTAG	1 cut(s)	674
BglII	AGATCT	1 cut(s)	153
Bme1390I	CCNGG	1 cut(s)	685
Bme18I	GGWCC	1 cut(s)	687
BmgT120I	GGNCC	1 cut(s)	687
BmiI	GGNNCC	4 cut(s)	525, 617, 728, 830
BmrFI	CCNGG	1 cut(s)	685
BmsI	GCATC	3 cut(s)	48, 466, 719
BpmI	CTGGAG	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	643
Bsc4I	CCNNNNNNNGG	1 cut(s)	198
Bse1I	ACTGG	3 cut(s)	82, 239, 617
BseBI	CCWGG	1 cut(s)	685
BseDI	CCNNGG	1 cut(s)	643
BseGI	GGATG	5 cut(s)	63, 139, 307, 574, 710
BseLI	CCNNNNNNNGG	1 cut(s)	198
BseNI	ACTGG	3 cut(s)	82, 239, 617
BshFI	GGCC	2 cut(s)	541, 597
BsiWI	CGTACG	1 cut(s)	128
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	1 cut(s)	198
BsmAI	GTCTC	2 cut(s)	106, 136
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	2 cut(s)	541, 597
Bsp1407I	TGTACA	1 cut(s)	668
Bsp143I	GATC	7 cut(s)	153, 213, 228, 292, 412, 572, 606
BspANI	GGCC	2 cut(s)	541, 597
BspHI	TCATGA	1 cut(s)	430
BspLI	GGNNCC	4 cut(s)	525, 617, 728, 830
BspPI	GGATC	4 cut(s)	221, 236, 407, 580
BsrGI	TGTACA	1 cut(s)	668
BsrI	ACTGG	3 cut(s)	82, 239, 617
BssECI	CCNNGG	1 cut(s)	643
BssMI	GATC	7 cut(s)	153, 213, 228, 292, 412, 572, 606
BssT1I	CCWWGG	1 cut(s)	643
Bst2UI	CCWGG	1 cut(s)	685
Bst4CI	ACNGT	1 cut(s)	812
BstAUI	TGTACA	1 cut(s)	668
BstC8I	GCNNGC	3 cut(s)	63, 341, 559
BstF5I	GGATG	5 cut(s)	63, 139, 307, 574, 710
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	7 cut(s)	156, 216, 231, 295, 415, 575, 609
BstMAI	GTCTC	2 cut(s)	106, 136
BstMBI	GATC	7 cut(s)	153, 213, 228, 292, 412, 572, 606
BstNI	CCWGG	1 cut(s)	685
BstSCI	CCNGG	1 cut(s)	683
BstX2I	RGATCY	2 cut(s)	153, 213
BstYI	RGATCY	2 cut(s)	153, 213
BsuRI	GGCC	2 cut(s)	541, 597
BtsCI	GGATG	5 cut(s)	63, 139, 307, 574, 710
BtsI	GCAGTG	1 cut(s)	264
BtsIMutI	CAGTG	4 cut(s)	18, 75, 246, 264
Cac8I	GCNNGC	3 cut(s)	63, 341, 559
CciI	TCATGA	1 cut(s)	430
CfoI	GCGC	1 cut(s)	179
Cfr13I	GGNCC	1 cut(s)	687
CseI	GACGC	1 cut(s)	563
Csp6I	GTAC	3 cut(s)	129, 669, 813
CviAII	CATG	5 cut(s)	105, 119, 160, 431, 620
CviJI	RGCY	7 cut(s)	5, 81, 343, 541, 597, 635, 666
CviKI_1	RGCY	7 cut(s)	5, 81, 343, 541, 597, 635, 666
CviQI	GTAC	3 cut(s)	129, 669, 813
DpnI	GATC	7 cut(s)	155, 215, 230, 294, 414, 574, 608
DpnII	GATC	7 cut(s)	153, 213, 228, 292, 412, 572, 606
DraI	TTTAAA	1 cut(s)	187
EaeI	YGGCCR	1 cut(s)	539
Eco130I	CCWWGG	1 cut(s)	643
Eco47I	GGWCC	1 cut(s)	687
EcoRII	CCWGG	1 cut(s)	683
EcoT14I	CCWWGG	1 cut(s)	643
EcoT22I	ATGCAT	1 cut(s)	712
ErhI	CCWWGG	1 cut(s)	643
FaeI	CATG	5 cut(s)	108, 122, 163, 434, 623
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	5 cut(s)	104, 118, 159, 430, 619
FauNDI	CATATG	3 cut(s)	222, 563, 772
FblI	GTMKAC	1 cut(s)	477
FokI	GGATG	5 cut(s)	70, 146, 314, 581, 697
FspBI	CTAG	1 cut(s)	674
GlaI	GCGC	1 cut(s)	178
GsuI	CTGGAG	1 cut(s)	276
HaeIII	GGCC	2 cut(s)	541, 597
HgaI	GACGC	1 cut(s)	563
HhaI	GCGC	1 cut(s)	179
Hin1II	CATG	5 cut(s)	108, 122, 163, 434, 623
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HinfI	GANTC	4 cut(s)	248, 397, 451, 818
HphI	GGTGA	3 cut(s)	302, 389, 793
Hpy166II	GTNNAC	3 cut(s)	478, 499, 671
Hpy188I	TCNGA	2 cut(s)	279, 424
Hpy188III	TCNNGA	3 cut(s)	232, 431, 734
Hpy8I	GTNNAC	3 cut(s)	478, 499, 671
Hpy99I	CGWCG	2 cut(s)	89, 482
HpyAV	CCTTC	5 cut(s)	10, 131, 281, 329, 772
HpyCH4III	ACNGT	1 cut(s)	812
HpyCH4V	TGCA	6 cut(s)	65, 151, 355, 623, 710, 852
Hsp92II	CATG	5 cut(s)	108, 122, 163, 434, 623
HspAI	GCGC	1 cut(s)	177
Kzo9I	GATC	7 cut(s)	153, 213, 228, 292, 412, 572, 606
LweI	GCATC	3 cut(s)	48, 466, 719
MaeI	CTAG	1 cut(s)	674
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	7 cut(s)	155, 215, 230, 294, 414, 574, 608
MboI	GATC	7 cut(s)	153, 213, 228, 292, 412, 572, 606
MflI	RGATCY	2 cut(s)	153, 213
MluCI	AATT	5 cut(s)	91, 441, 462, 489, 577
MnlI	CCTC	4 cut(s)	219, 237, 587, 849
Mph1103I	ATGCAT	1 cut(s)	712
MseI	TTAA	4 cut(s)	186, 195, 651, 696
MslI	CAYNNNNRTG	1 cut(s)	721
MspR9I	CCNGG	1 cut(s)	685
MvaI	CCWGG	1 cut(s)	685
NdeI	CATATG	3 cut(s)	222, 563, 772
NdeII	GATC	7 cut(s)	153, 213, 228, 292, 412, 572, 606
NlaIII	CATG	5 cut(s)	108, 122, 163, 434, 623
NlaIV	GGNNCC	4 cut(s)	525, 617, 728, 830
NmuCI	GTSAC	1 cut(s)	262
NsiI	ATGCAT	1 cut(s)	712
PagI	TCATGA	1 cut(s)	430
PfeI	GAWTC	4 cut(s)	248, 397, 451, 818
Pfl23II	CGTACG	1 cut(s)	128
PflMI	CCANNNNNTGG	1 cut(s)	198
PfoI	TCCNGGA	1 cut(s)	683
PsiI	TTATAA	1 cut(s)	96
Psp6I	CCWGG	1 cut(s)	683
PspGI	CCWGG	1 cut(s)	683
PspLI	CGTACG	1 cut(s)	128
PspN4I	GGNNCC	4 cut(s)	525, 617, 728, 830
PspPI	GGNCC	1 cut(s)	687
PsrI	GAACNNNNNNTAC	2 cut(s)	791, 823
PsuI	RGATCY	2 cut(s)	153, 213
RsaI	GTAC	3 cut(s)	130, 670, 814
RsaNI	GTAC	3 cut(s)	129, 669, 813
RseI	CAYNNNNRTG	1 cut(s)	721
SalI	GTCGAC	1 cut(s)	476
SaqAI	TTAA	4 cut(s)	186, 195, 651, 696
Sau3AI	GATC	7 cut(s)	153, 213, 228, 292, 412, 572, 606
Sau96I	GGNCC	1 cut(s)	687
ScrFI	CCNGG	1 cut(s)	685
SetI	ASST	6 cut(s)	292, 637, 783, 830, 841, 866
SfaNI	GCATC	3 cut(s)	48, 466, 719
SinI	GGWCC	1 cut(s)	687
SmiMI	CAYNNNNRTG	1 cut(s)	721
Sse9I	AATT	5 cut(s)	91, 441, 462, 489, 577
SspI	AATATT	2 cut(s)	170, 517
SspMI	CTAG	1 cut(s)	674
StyD4I	CCNGG	1 cut(s)	683
StyI	CCWWGG	1 cut(s)	643
TaaI	ACNGT	1 cut(s)	812
TaqI	TCGA	3 cut(s)	84, 477, 609
TaqII	GACCGA	1 cut(s)	704
TasI	AATT	5 cut(s)	91, 441, 462, 489, 577
TatI	WGTACW	2 cut(s)	668, 812
TfiI	GAWTC	4 cut(s)	248, 397, 451, 818
Tru1I	TTAA	4 cut(s)	186, 195, 651, 696
Tru9I	TTAA	4 cut(s)	186, 195, 651, 696
TscAI	CASTG	4 cut(s)	18, 82, 246, 271
TseFI	GTSAC	1 cut(s)	262
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	5 cut(s)	150, 209, 419, 525, 812
TspGWI	ACGGA	1 cut(s)	146
TspRI	CASTG	4 cut(s)	18, 82, 246, 271
Van91I	CCANNNNNTGG	1 cut(s)	198
VpaK11BI	GGWCC	1 cut(s)	687
XapI	RAATTY	1 cut(s)	441
XmiI	GTMKAC	1 cut(s)	477
XspI	CTAG	1 cut(s)	674
Zsp2I	ATGCAT	1 cut(s)	712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.