Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001964

Physical Location & Seq

Genomic Coordinates Reverse (-)

47062439 .. 47063023

Gene Structure 585 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG276600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGTGATAACTTCAGAGAGCAAAGGACACTTCTTTGGTTTGACCCAACAGCAGATTTTCATGACTACAAGATTCTTTGGAACCATCATCAAGTTGTGTAAGAATTATGTCCCTCCAGTCGTATGTATTTGTACATGCATATCAGAACATTATTTGTACTTGAACATAGTCTATTCTTTCTCGTGCAGCTTTTATATCGACGATATCCCCATCAGGGTTTTTAGGAACAACAAAAAAATTAAGGTTCCCTATCTAACGCGGCCGATGGTAATAGATGCAAGCATATGGGATGGATCAGATTGGGCAACTGATGGAGGCCAAACAAAGATCGACTATAACCATGCACCATTTAGAGCTTATTTCCAAGGGTTTGACATGAATGCCTGCTCACTGGACAAGTCCAAGACCGATGTCTCGGAATGTTATGCTACAAAATATTTGTGGAACCACAGGGTCTATTGGCAACTAAACCCAACGGAACAAGAAGCATATGACAGGGTGAGAAGAGAATATATGAACTATGACTATTGTACTGATACGCAAAGGTTCCACACGCTTCCCCGAGAGTGCACCAGTGATAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009832 GO:0009987 GO:0010228 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0022414 GO:0030243 GO:0032501 GO:0032502 GO:0042546 GO:0043170 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0046527 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051273 GO:0061458 GO:0071554 GO:0071669 GO:0071704 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

194

Amino Acids

22.93

Weight (kDa)

6.92

Isoelectric Point (pI)

50.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	62 - 113	5.6e-12	Glycosyl hydrolases family 16
XET_C	PF06955	145 - 190	1.7e-15	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25050 AT4G13080 AT4G13090
fragaria_vesca	FvH4_2g18760 FvH4_2g18761 FvH4_3g26030 FvH4_3g26030
malus_domestica	MD03G1093100.v1.1 MD05G1173300.v1.1 MD05G1173400.v1.1 MD05G1173600.v1.1
prunus_persica	Prupe.8G200900_v2.0.a1 Prupe.8G200900_v2.0.a1 Prupe.8G200900_v2.0.a1 Prupe.8G201000_v2.0.a1
pyrus_communis	pycom05g16020 pycom05g16030 pycom05g16040
rosa_chinensis	RchiOBHm_Chr5g0047321 RchiOBHm_Chr6g0284451 RchiOBHm_Chr6g0284461 RchiOBHm_Chr6g0284491
rosa_laevigata	RLG00000012742 RLG00000012743
rosa_roxburghii	Rroxscaffold_1G00034030 Rroxscaffold_7G00184670 Rroxscaffold_7G00184680 Rroxscaffold_7G00184690
rosa_rugosa	Rorug05G0235900 Rorug06G0163800
rosa_samantha	Rh5BG323400 Rh5CG350600 Rh5DG334400 Rh6AG276600 Rh6AG276900 Rh6BG276600 Rh6BG276700 Rh6CG278600 Rh6CG278700 Rh6CG278900 Rh6DG271000 Rh6DG271100 Rh6DG271300
rosa_wichuraiana	Rw6G023760 Rw6G023770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	259
AciI	CCGC	1 cut(s)	259
AclWI	GGATC	1 cut(s)	301
AcoI	YGGCCR	1 cut(s)	260
AfaI	GTAC	3 cut(s)	133, 158, 532
AfiI	CCNNNNNNNGG	1 cut(s)	214
AgsI	TTSAA	1 cut(s)	163
AluBI	AGCT	3 cut(s)	189, 356, 582
AluI	AGCT	3 cut(s)	189, 356, 582
Alw21I	GWGCWC	1 cut(s)	572
Alw26I	GTCTC	1 cut(s)	418
Alw44I	GTGCAC	1 cut(s)	568
AlwI	GGATC	1 cut(s)	301
Ama87I	CYCGRG	1 cut(s)	561
AoxI	GGCC	2 cut(s)	260, 316
ApaLI	GTGCAC	1 cut(s)	568
ApeKI	GCWGC	1 cut(s)	186
AsuHPI	GGTGA	2 cut(s)	16, 511
AvaI	CYCGRG	1 cut(s)	561
BaeGI	GKGCMC	1 cut(s)	572
BauI	CACGAG	1 cut(s)	181
Bbv12I	GWGCWC	1 cut(s)	572
BbvI	GCAGC	1 cut(s)	198
BccI	CCATC	5 cut(s)	92, 218, 259, 284, 305
BcoDI	GTCTC	1 cut(s)	418
BfaI	CTAG	1 cut(s)	583
BisI	GCNGC	2 cut(s)	187, 260
BlsI	GCNGC	2 cut(s)	188, 261
BmeT110I	CYCGRG	1 cut(s)	561
BmiI	GGNNCC	4 cut(s)	82, 246, 446, 548
BmsI	GCATC	1 cut(s)	265
BoxI	GACNNNNGTC	1 cut(s)	410
BpmI	CTGGAG	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	364
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse1I	ACTGG	3 cut(s)	116, 396, 573
BseDI	CCNNGG	1 cut(s)	364
BseGI	GGATG	1 cut(s)	295
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseNI	ACTGG	3 cut(s)	116, 396, 573
BseSI	GKGCMC	1 cut(s)	572
BseX3I	CGGCCG	1 cut(s)	260
BseXI	GCAGC	1 cut(s)	198
BsgI	GTGCAG	1 cut(s)	205
Bsh1236I	CGCG	1 cut(s)	259
Bsh1285I	CGRYCG	1 cut(s)	263
BshFI	GGCC	2 cut(s)	262, 318
BsiEI	CGRYCG	1 cut(s)	263
BsiHKAI	GWGCWC	1 cut(s)	572
BsiHKCI	CYCGRG	1 cut(s)	561
BslFI	GGGAC	1 cut(s)	95
BslI	CCNNNNNNNGG	1 cut(s)	214
BsmAI	GTCTC	1 cut(s)	418
BsmFI	GGGAC	1 cut(s)	95
BsmI	GAATGC	1 cut(s)	385
BsnI	GGCC	2 cut(s)	262, 318
BsoBI	CYCGRG	1 cut(s)	561
Bsp1286I	GDGCHC	1 cut(s)	572
Bsp1407I	TGTACA	1 cut(s)	131
Bsp143I	GATC	2 cut(s)	293, 327
BspACI	CCGC	1 cut(s)	259
BspANI	GGCC	2 cut(s)	262, 318
BspFNI	CGCG	1 cut(s)	259
BspHI	TCATGA	1 cut(s)	60
BspLI	GGNNCC	4 cut(s)	82, 246, 446, 548
BspPI	GGATC	1 cut(s)	301
BsrGI	TGTACA	1 cut(s)	131
BsrI	ACTGG	3 cut(s)	116, 396, 573
BssECI	CCNNGG	1 cut(s)	364
BssMI	GATC	2 cut(s)	293, 327
BssSI	CACGAG	1 cut(s)	181
BssT1I	CCWWGG	1 cut(s)	364
Bst2BI	CACGAG	1 cut(s)	181
Bst6I	CTCTTC	1 cut(s)	499
BstAUI	TGTACA	1 cut(s)	131
BstC8I	GCNNGC	2 cut(s)	280, 385
BstF5I	GGATG	1 cut(s)	295
BstFNI	CGCG	1 cut(s)	259
BstKTI	GATC	2 cut(s)	296, 330
BstMAI	GTCTC	1 cut(s)	418
BstMBI	GATC	2 cut(s)	293, 327
BstMCI	CGRYCG	1 cut(s)	263
BstNSI	RCATGY	1 cut(s)	138
BstPAI	GACNNNNGTC	1 cut(s)	410
BstSLI	GKGCMC	1 cut(s)	572
BstUI	CGCG	1 cut(s)	259
BstV1I	GCAGC	1 cut(s)	198
BstZI	CGGCCG	1 cut(s)	260
BsuRI	GGCC	2 cut(s)	262, 318
BtsCI	GGATG	1 cut(s)	295
BtsIMutI	CAGTG	2 cut(s)	389, 580
Cac8I	GCNNGC	2 cut(s)	280, 385
CciI	TCATGA	1 cut(s)	60
Csp6I	GTAC	3 cut(s)	132, 157, 531
CviAII	CATG	4 cut(s)	61, 135, 341, 376
CviJI	RGCY	5 cut(s)	189, 262, 318, 356, 582
CviKI_1	RGCY	5 cut(s)	189, 262, 318, 356, 582
CviQI	GTAC	3 cut(s)	132, 157, 531
DpnI	GATC	2 cut(s)	295, 329
DpnII	GATC	2 cut(s)	293, 327
EaeI	YGGCCR	1 cut(s)	260
EagI	CGGCCG	1 cut(s)	260
Eam1104I	CTCTTC	1 cut(s)	499
EarI	CTCTTC	1 cut(s)	499
EclXI	CGGCCG	1 cut(s)	260
Eco130I	CCWWGG	1 cut(s)	364
Eco32I	GATATC	1 cut(s)	205
Eco52I	CGGCCG	1 cut(s)	260
Eco88I	CYCGRG	1 cut(s)	561
EcoRV	GATATC	1 cut(s)	205
EcoT14I	CCWWGG	1 cut(s)	364
EcoT22I	ATGCAT	1 cut(s)	140
ErhI	CCWWGG	1 cut(s)	364
FaeI	CATG	4 cut(s)	64, 138, 344, 379
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	4 cut(s)	60, 134, 340, 375
FauNDI	CATATG	2 cut(s)	284, 490
Fnu4HI	GCNGC	2 cut(s)	187, 260
FokI	GGATG	1 cut(s)	302
Fsp4HI	GCNGC	2 cut(s)	187, 260
FspBI	CTAG	1 cut(s)	583
GluI	GCNGC	2 cut(s)	187, 260
GsuI	CTGGAG	1 cut(s)	99
HaeIII	GGCC	2 cut(s)	262, 318
Hin1II	CATG	4 cut(s)	64, 138, 344, 379
HinfI	GANTC	1 cut(s)	72
HphI	GGTGA	2 cut(s)	16, 511
Hpy166II	GTNNAC	1 cut(s)	570
Hpy188I	TCNGA	4 cut(s)	16, 145, 298, 418
Hpy188III	TCNNGA	1 cut(s)	61
Hpy8I	GTNNAC	1 cut(s)	570
Hpy99I	CGWCG	1 cut(s)	203
HpyCH4V	TGCA	5 cut(s)	138, 186, 278, 344, 570
Hsp92II	CATG	4 cut(s)	64, 138, 344, 379
Kzo9I	GATC	2 cut(s)	293, 327
LpnPI	CCDG	6 cut(s)	129, 199, 377, 397, 436, 481
Lsp1109I	GCAGC	1 cut(s)	198
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	1 cut(s)	583
MalI	GATC	2 cut(s)	295, 329
MboI	GATC	2 cut(s)	293, 327
MboII	GAAGA	1 cut(s)	516
MhlI	GDGCHC	1 cut(s)	572
MluCI	AATT	2 cut(s)	103, 237
MnlI	CCTC	2 cut(s)	123, 308
Mph1103I	ATGCAT	1 cut(s)	140
MseI	TTAA	1 cut(s)	240
Mva1269I	GAATGC	1 cut(s)	385
MvnI	CGCG	1 cut(s)	259
NdeI	CATATG	2 cut(s)	284, 490
NdeII	GATC	2 cut(s)	293, 327
NlaIII	CATG	4 cut(s)	64, 138, 344, 379
NlaIV	GGNNCC	4 cut(s)	82, 246, 446, 548
NsiI	ATGCAT	1 cut(s)	140
NspI	RCATGY	1 cut(s)	138
PagI	TCATGA	1 cut(s)	60
PctI	GAATGC	1 cut(s)	385
PfeI	GAWTC	1 cut(s)	72
PkrI	GCNGC	2 cut(s)	188, 261
PshAI	GACNNNNGTC	1 cut(s)	410
PspN4I	GGNNCC	4 cut(s)	82, 246, 446, 548
RsaI	GTAC	3 cut(s)	133, 158, 532
RsaNI	GTAC	3 cut(s)	132, 157, 531
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	2 cut(s)	187, 260
Sau3AI	GATC	2 cut(s)	293, 327
SduI	GDGCHC	1 cut(s)	572
SetI	ASST	5 cut(s)	191, 246, 358, 548, 584
SfaNI	GCATC	1 cut(s)	265
Sse9I	AATT	2 cut(s)	103, 237
SsiI	CCGC	1 cut(s)	259
SspI	AATATT	1 cut(s)	437
SspMI	CTAG	1 cut(s)	583
StyI	CCWWGG	1 cut(s)	364
TaqI	TCGA	2 cut(s)	198, 330
TaqII	GACCGA	1 cut(s)	422
TasI	AATT	2 cut(s)	103, 237
TatI	WGTACW	3 cut(s)	131, 156, 530
TauI	GCSGC	1 cut(s)	262
TfiI	GAWTC	1 cut(s)	72
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	2 cut(s)	396, 580
TseI	GCWGC	1 cut(s)	186
TspDTI	ATGAA	3 cut(s)	49, 392, 530
TspGWI	ACGGA	1 cut(s)	491
TspRI	CASTG	2 cut(s)	396, 580
VneI	GTGCAC	1 cut(s)	568
XceI	RCATGY	1 cut(s)	138
XspI	CTAG	1 cut(s)	583
Zsp2I	ATGCAT	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.