Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001964

Physical Location & Seq

Genomic Coordinates Reverse (-)

16007040 .. 16008243

Gene Structure 1204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g18761.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGAGTGAAGCCTTTGATGATGTTAGATTTGATGAAAACTACGTCGTTCGATACGGAAATGATCATATCTCGAAGCTAGACCAAGGAAGAGAAGTTCAGCTCTCTTTGGACTTGGCTTCAGGATCGGGGTTTAATTCCAAGCGTGGCTACGGTTCGGGATTCTTTGAAATGAGAATAAAGTTGCCAGCAAGACATTCTCCGGGAGTTGTCACTACATTTTATCTAAGTTCACATCCAGATAATAAGCCTGGAAATCATGATGAGCTAGACTTTGAGTTCTTGGGCACAGAAGGACCTGTATTCTCTTTACAAACAAATATTTTCGCAAATGACAATGGGAATAGAGAGCAAAGACTTCATCTTTGGTTTGATCCCACAAAGGATTTCCATAAGTATGGAATCCTATGGAACCATCGCCAAATAGTGTTTTTTGTGGACAACATCCCTATTAGAGTGTTCAAGAACAATACAAGGTTGGGAGCAAGGTACCCTTCACAAGAGATGTCTGTGGAGGGAAGCATATGGAATGGAGAATCTTGGGCATCAAGTGGGAAAAAGATTGAATGGTCTCAAGCACCATTCCAAGCACACTACCAAGAATTTGATATATATGGGTGTCCATTTGGAGCCAATTGCTCTTCTGAATCTCAACTCTACTGGTGGAATACAAAGGAGTTCTATGAACTGACCCCAGAACAACAAAGAATCTATAAGAAAGTGACTCAGAAATACATGTTTTATGACTATTGTCATGATAGGGGAAGAAACTTCAAGGAATGCCAAATAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

264

Amino Acids

30.89

Weight (kDa)

6.15

Isoelectric Point (pI)

46.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	11 - 190	1.9e-54	Glycosyl hydrolases family 16
XET_C	PF06955	218 - 256	5e-11	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25050 AT4G13080 AT4G13090
fragaria_vesca	FvH4_2g18760 FvH4_2g18761 FvH4_3g26030 FvH4_3g26030
malus_domestica	MD03G1093100.v1.1 MD05G1173300.v1.1 MD05G1173400.v1.1 MD05G1173600.v1.1
prunus_persica	Prupe.8G200900_v2.0.a1 Prupe.8G200900_v2.0.a1 Prupe.8G200900_v2.0.a1 Prupe.8G201000_v2.0.a1
pyrus_communis	pycom05g16020 pycom05g16030 pycom05g16040
rosa_chinensis	RchiOBHm_Chr5g0047321 RchiOBHm_Chr6g0284451 RchiOBHm_Chr6g0284461 RchiOBHm_Chr6g0284491
rosa_laevigata	RLG00000012742 RLG00000012743
rosa_roxburghii	Rroxscaffold_1G00034030 Rroxscaffold_7G00184670 Rroxscaffold_7G00184680 Rroxscaffold_7G00184690
rosa_rugosa	Rorug05G0235900 Rorug06G0163800
rosa_samantha	Rh5BG323400 Rh5CG350600 Rh5DG334400 Rh6AG276600 Rh6AG276900 Rh6BG276600 Rh6BG276700 Rh6CG278600 Rh6CG278700 Rh6CG278900 Rh6DG271000 Rh6DG271100 Rh6DG271300
rosa_wichuraiana	Rw6G023760 Rw6G023770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	486
AccB1I	GGYRCC	1 cut(s)	486
AclWI	GGATC	2 cut(s)	130, 365
AcsI	RAATTY	1 cut(s)	599
AcuI	CTGAAG	1 cut(s)	102
AfaI	GTAC	1 cut(s)	488
AflIII	ACRYGT	1 cut(s)	732
AgsI	TTSAA	4 cut(s)	167, 460, 563, 772
AjnI	CCWGG	1 cut(s)	247
AloI	GAACNNNNNNTCC	2 cut(s)	78, 110
AluBI	AGCT	3 cut(s)	76, 100, 265
AluI	AGCT	3 cut(s)	76, 100, 265
Alw26I	GTCTC	1 cut(s)	573
AlwI	GGATC	2 cut(s)	130, 365
ApoI	RAATTY	1 cut(s)	599
ArsI	GACNNNNNNTTYG	2 cut(s)	345, 377
Asp718I	GGTACC	1 cut(s)	486
AspS9I	GGNCC	1 cut(s)	293
AsuC2I	CCSGG	1 cut(s)	201
AvaII	GGWCC	1 cut(s)	293
BaeGI	GKGCMC	1 cut(s)	287
BanI	GGYRCC	1 cut(s)	486
BccI	CCATC	1 cut(s)	420
BciT130I	CCWGG	1 cut(s)	249
BclI	TGATCA	1 cut(s)	61
BcnI	CCSGG	1 cut(s)	201
BcoDI	GTCTC	1 cut(s)	573
BfaI	CTAG	2 cut(s)	77, 266
Bme1390I	CCNGG	2 cut(s)	201, 249
Bme18I	GGWCC	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	293
BmiI	GGNNCC	3 cut(s)	410, 488, 628
BmrFI	CCNGG	2 cut(s)	201, 249
BmsI	GCATC	1 cut(s)	551
BoxI	GACNNNNGTC	1 cut(s)	747
BpuEI	CTTGAG	1 cut(s)	555
BpuMI	CCSGG	1 cut(s)	201
BsaI	GGTCTC	1 cut(s)	573
BsaJI	CCNNGG	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	662
BseBI	CCWGG	1 cut(s)	249
BseDI	CCNNGG	1 cut(s)	82
BseGI	GGATG	2 cut(s)	232, 441
BseMII	CTCAG	1 cut(s)	737
BseNI	ACTGG	1 cut(s)	662
BseSI	GKGCMC	1 cut(s)	287
BshNI	GGYRCC	1 cut(s)	486
BsiSI	CCGG	1 cut(s)	200
BsmAI	GTCTC	1 cut(s)	573
BsmI	GAATGC	1 cut(s)	782
Bso31I	GGTCTC	1 cut(s)	573
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp143I	GATC	3 cut(s)	61, 122, 370
BspCNI	CTCAG	1 cut(s)	736
BspHI	TCATGA	2 cut(s)	256, 751
BspLI	GGNNCC	3 cut(s)	410, 488, 628
BspPI	GGATC	2 cut(s)	130, 365
BspQI	GCTCTTC	1 cut(s)	643
BspT107I	GGYRCC	1 cut(s)	486
BspTNI	GGTCTC	1 cut(s)	573
BsrI	ACTGG	1 cut(s)	662
BssECI	CCNNGG	1 cut(s)	82
BssMI	GATC	3 cut(s)	61, 122, 370
BssT1I	CCWWGG	1 cut(s)	82
Bst2UI	CCWGG	1 cut(s)	249
Bst4CI	ACNGT	1 cut(s)	152
Bst6I	CTCTTC	2 cut(s)	82, 643
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	2 cut(s)	224, 723
BstF5I	GGATG	2 cut(s)	232, 441
BstKTI	GATC	3 cut(s)	64, 125, 373
BstMAI	GTCTC	1 cut(s)	573
BstMBI	GATC	3 cut(s)	61, 122, 370
BstNI	CCWGG	1 cut(s)	249
BstNSI	RCATGY	1 cut(s)	736
BstPAI	GACNNNNGTC	1 cut(s)	747
BstSCI	CCNGG	2 cut(s)	199, 247
BstSLI	GKGCMC	1 cut(s)	287
BstXI	CCANNNNNNTGG	1 cut(s)	395
BtgZI	GCGATG	1 cut(s)	398
BtsCI	GGATG	2 cut(s)	232, 441
Cac8I	GCNNGC	1 cut(s)	186
CciI	TCATGA	2 cut(s)	256, 751
Cfr13I	GGNCC	1 cut(s)	293
Csp6I	GTAC	1 cut(s)	487
CviAII	CATG	3 cut(s)	257, 733, 752
CviJI	RGCY	8 cut(s)	11, 76, 100, 116, 147, 247, 265, 629
CviKI_1	RGCY	8 cut(s)	11, 76, 100, 116, 147, 247, 265, 629
CviQI	GTAC	1 cut(s)	487
DdeI	CTNAG	2 cut(s)	224, 723
DpnI	GATC	3 cut(s)	63, 124, 372
DpnII	GATC	3 cut(s)	61, 122, 370
Eam1104I	CTCTTC	2 cut(s)	82, 643
EarI	CTCTTC	2 cut(s)	82, 643
Eco130I	CCWWGG	1 cut(s)	82
Eco31I	GGTCTC	1 cut(s)	573
Eco47I	GGWCC	1 cut(s)	293
Eco57I	CTGAAG	1 cut(s)	102
EcoO109I	RGGNCCY	1 cut(s)	293
EcoRII	CCWGG	1 cut(s)	247
EcoT14I	CCWWGG	1 cut(s)	82
ErhI	CCWWGG	1 cut(s)	82
FaeI	CATG	3 cut(s)	260, 736, 755
FalI	AAGNNNNNCTT	2 cut(s)	475, 507
FatI	CATG	3 cut(s)	256, 732, 751
FauNDI	CATATG	1 cut(s)	521
FbaI	TGATCA	1 cut(s)	61
FokI	GGATG	2 cut(s)	219, 428
FspBI	CTAG	2 cut(s)	77, 266
HapII	CCGG	1 cut(s)	200
Hin1II	CATG	3 cut(s)	260, 736, 755
HinfI	GANTC	6 cut(s)	159, 399, 533, 644, 705, 721
HpaII	CCGG	1 cut(s)	200
Hpy166II	GTNNAC	2 cut(s)	230, 436
Hpy188I	TCNGA	2 cut(s)	643, 726
Hpy188III	TCNNGA	7 cut(s)	70, 120, 156, 236, 257, 460, 752
Hpy8I	GTNNAC	2 cut(s)	230, 436
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	2 cut(s)	284, 501
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4IV	ACGT	1 cut(s)	42
HpyF3I	CTNAG	2 cut(s)	224, 723
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	3 cut(s)	260, 736, 755
KpnI	GGTACC	1 cut(s)	490
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	3 cut(s)	61, 122, 370
LguI	GCTCTTC	1 cut(s)	643
LmnI	GCTCC	2 cut(s)	479, 626
LpnPI	CCDG	9 cut(s)	105, 198, 213, 234, 249, 261, 309, 643, 705
LweI	GCATC	1 cut(s)	551
MaeI	CTAG	2 cut(s)	77, 266
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	2 cut(s)	208, 718
MalI	GATC	3 cut(s)	63, 124, 372
MboI	GATC	3 cut(s)	61, 122, 370
MboII	GAAGA	3 cut(s)	99, 630, 774
MfeI	CAATTG	1 cut(s)	631
MhlI	GDGCHC	1 cut(s)	287
MluCI	AATT	3 cut(s)	133, 599, 631
MlyI	GAGTC	1 cut(s)	715
MnlI	CCTC	1 cut(s)	505
MseI	TTAA	1 cut(s)	132
MslI	CAYNNNNRTG	1 cut(s)	393
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	2 cut(s)	201, 249
MunI	CAATTG	1 cut(s)	631
Mva1269I	GAATGC	1 cut(s)	782
MvaI	CCWGG	1 cut(s)	249
NciI	CCSGG	1 cut(s)	201
NdeI	CATATG	1 cut(s)	521
NdeII	GATC	3 cut(s)	61, 122, 370
NlaIII	CATG	3 cut(s)	260, 736, 755
NlaIV	GGNNCC	3 cut(s)	410, 488, 628
NmuCI	GTSAC	2 cut(s)	208, 718
NspI	RCATGY	1 cut(s)	736
PagI	TCATGA	2 cut(s)	256, 751
PciI	ACATGT	1 cut(s)	732
PciSI	GCTCTTC	1 cut(s)	643
PctI	GAATGC	1 cut(s)	782
PfeI	GAWTC	5 cut(s)	159, 399, 533, 644, 705
PfoI	TCCNGGA	1 cut(s)	199
PleI	GAGTC	1 cut(s)	715
PpsI	GAGTC	1 cut(s)	715
PpuMI	RGGWCCY	1 cut(s)	293
PscI	ACATGT	1 cut(s)	732
PshAI	GACNNNNGTC	1 cut(s)	747
Psp5II	RGGWCCY	1 cut(s)	293
Psp6I	CCWGG	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	247
PspN4I	GGNNCC	3 cut(s)	410, 488, 628
PspPI	GGNCC	1 cut(s)	293
PspPPI	RGGWCCY	1 cut(s)	293
RsaI	GTAC	1 cut(s)	488
RsaNI	GTAC	1 cut(s)	487
RseI	CAYNNNNRTG	1 cut(s)	393
SapI	GCTCTTC	1 cut(s)	643
SaqAI	TTAA	1 cut(s)	132
Sau3AI	GATC	3 cut(s)	61, 122, 370
Sau96I	GGNCC	1 cut(s)	293
SchI	GAGTC	1 cut(s)	715
ScrFI	CCNGG	2 cut(s)	201, 249
SduI	GDGCHC	1 cut(s)	287
SetI	ASST	7 cut(s)	45, 78, 102, 267, 298, 476, 488
SfaNI	GCATC	1 cut(s)	551
SinI	GGWCC	1 cut(s)	293
SmiMI	CAYNNNNRTG	1 cut(s)	393
SmlI	CTYRAG	1 cut(s)	570
SmoI	CTYRAG	1 cut(s)	570
Sse9I	AATT	3 cut(s)	133, 599, 631
SspI	AATATT	1 cut(s)	319
SspMI	CTAG	2 cut(s)	77, 266
StyD4I	CCNGG	2 cut(s)	199, 247
StyI	CCWWGG	1 cut(s)	82
TaaI	ACNGT	1 cut(s)	152
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	2 cut(s)	49, 71
TasI	AATT	3 cut(s)	133, 599, 631
TfiI	GAWTC	5 cut(s)	159, 399, 533, 644, 705
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TseFI	GTSAC	2 cut(s)	208, 718
Tsp45I	GTSAC	2 cut(s)	208, 718
TspDTI	ATGAA	3 cut(s)	48, 347, 696
TspGWI	ACGGA	1 cut(s)	69
VpaK11BI	GGWCC	1 cut(s)	293
XapI	RAATTY	1 cut(s)	599
XceI	RCATGY	1 cut(s)	736
XspI	CTAG	2 cut(s)	77, 266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.