Rh6BG276700

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001964
Physical Location & Seq
Reverse (-)
49767218 .. 49768403
1186 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG276700.1

Sequence Viewer

Length: 615 bp
ATGATGCGGCTTTCTTTGATCTTGTTTCTAGTACTTGTTGTAATGAAACATACAAGTGAAGCTGCTGATAATGTTAGCTTTGATGAAACATACGTCGTTCGATGCGGAAATGATCATATCTCGAAGCTAGACCAAGGAAGAGAAAACCCGACATGCATGCTAGGATCGGGGTTTAATTCCAAGTATGGCTATGGTTCGGGATTCTTTGAAATGAAAATAAAGTTGGCGGCTAGACATTCTCCAGGAGTTGTCGCCACATTTTATCTAAGTTCACATCCAGATAGTAAGCCTGGAAATCATGATGAGCTAGACTTTGAGTTCTTGGGCACAGATGGACCTGTATACACTGTACAAACAAATATTTTCGCAAATGACAATGGGAATAGAGAGCAAAGACTTCATCTTTGGTTTGATCCCACAAAGAATTTTCGTAAGTATGGAATCCTGTGGAAGTGGAACCATCGCCAAGTAGTGTTTTTTGTGGACAACATCCCCATTAGAGTGTTCAAGAACAATACAAGGTTGGCTGCAAGGTACCCTTCACAACAGATGTCTGTGGAGGGAAGCATATGGAATATATGGAGAATCTTGGGCATCAAGTGGGAAAAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_16 XET_C

Protein Analysis

204

Amino Acids

23.6

Weight (kDa)

8.83

Isoelectric Point (pI)

29.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 53 - 192 5e-40 Glycosyl hydrolases family 16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 534
AccB1I GGYRCC 1 cut(s) 534
AccI GTMKAC 1 cut(s) 342
AciI CCGC 3 cut(s) 7, 105, 227
AclWI GGATC 2 cut(s) 172, 407
AcsI RAATTY 1 cut(s) 424
AfaI GTAC 3 cut(s) 33, 351, 536
AgsI TTSAA 2 cut(s) 209, 508
AjnI CCWGG 2 cut(s) 241, 289
AjuI GAANNNNNNNTTGG 2 cut(s) 206, 238
AluBI AGCT 4 cut(s) 62, 78, 127, 307
AluI AGCT 4 cut(s) 62, 78, 127, 307
AlwI GGATC 2 cut(s) 172, 407
ApeKI GCWGC 2 cut(s) 62, 527
ApoI RAATTY 1 cut(s) 424
ArsI GACNNNNNNTTYG 2 cut(s) 387, 419
Asp718I GGTACC 1 cut(s) 534
AspS9I GGNCC 1 cut(s) 335
AvaII GGWCC 1 cut(s) 335
BaeGI GKGCMC 1 cut(s) 329
BanI GGYRCC 1 cut(s) 534
BbvI GCAGC 2 cut(s) 49, 514
BccI CCATC 2 cut(s) 326, 468
BcgI CGANNNNNNTGC 2 cut(s) 139, 173
BciT130I CCWGG 2 cut(s) 243, 291
BclI TGATCA 1 cut(s) 112
BfaI CTAG 5 cut(s) 29, 128, 161, 231, 308
BisI GCNGC 4 cut(s) 8, 63, 228, 528
BlsI GCNGC 4 cut(s) 9, 64, 229, 529
BmcAI AGTACT 1 cut(s) 33
Bme1390I CCNGG 2 cut(s) 243, 291
Bme18I GGWCC 1 cut(s) 335
BmgT120I GGNCC 1 cut(s) 335
BmiI GGNNCC 2 cut(s) 458, 536
BmrFI CCNGG 2 cut(s) 243, 291
BmsI GCATC 2 cut(s) 92, 603
BpmI CTGGAG 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 133
BseBI CCWGG 2 cut(s) 243, 291
BseDI CCNNGG 1 cut(s) 133
BseGI GGATG 2 cut(s) 274, 489
BseSI GKGCMC 1 cut(s) 329
BseXI GCAGC 2 cut(s) 49, 514
BshNI GGYRCC 1 cut(s) 534
Bsp1286I GDGCHC 1 cut(s) 329
Bsp1407I TGTACA 1 cut(s) 349
Bsp143I GATC 4 cut(s) 18, 112, 164, 412
BspACI CCGC 3 cut(s) 7, 105, 227
BspHI TCATGA 1 cut(s) 298
BspLI GGNNCC 2 cut(s) 458, 536
BspPI GGATC 2 cut(s) 172, 407
BspT107I GGYRCC 1 cut(s) 534
BsrGI TGTACA 1 cut(s) 349
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 4 cut(s) 18, 112, 164, 412
BssNAI GTATAC 1 cut(s) 343
BssT1I CCWWGG 1 cut(s) 133
Bst1107I GTATAC 1 cut(s) 343
Bst2UI CCWGG 2 cut(s) 243, 291
Bst4CI ACNGT 1 cut(s) 349
Bst6I CTCTTC 1 cut(s) 133
BstAUI TGTACA 1 cut(s) 349
BstC8I GCNNGC 1 cut(s) 158
BstDEI CTNAG 1 cut(s) 266
BstF5I GGATG 2 cut(s) 274, 489
BstKTI GATC 4 cut(s) 21, 115, 167, 415
BstMBI GATC 4 cut(s) 18, 112, 164, 412
BstNI CCWGG 2 cut(s) 243, 291
BstNSI RCATGY 2 cut(s) 156, 160
BstSCI CCNGG 2 cut(s) 241, 289
BstSLI GKGCMC 1 cut(s) 329
BstV1I GCAGC 2 cut(s) 49, 514
BstZ17I GTATAC 1 cut(s) 343
BtgZI GCGATG 1 cut(s) 446
BtsCI GGATG 2 cut(s) 274, 489
BtsIMutI CAGTG 1 cut(s) 345
Cac8I GCNNGC 1 cut(s) 158
CciI TCATGA 1 cut(s) 298
Cfr13I GGNCC 1 cut(s) 335
Csp6I GTAC 3 cut(s) 32, 350, 535
CviAII CATG 3 cut(s) 153, 157, 299
CviJI RGCY 9 cut(s) 10, 62, 78, 127, 189, 230, 289, 307, 527
CviKI_1 RGCY 9 cut(s) 10, 62, 78, 127, 189, 230, 289, 307, 527
CviQI GTAC 3 cut(s) 32, 350, 535
DdeI CTNAG 1 cut(s) 266
DpnI GATC 4 cut(s) 20, 114, 166, 414
DpnII GATC 4 cut(s) 18, 112, 164, 412
Eam1104I CTCTTC 1 cut(s) 133
EarI CTCTTC 1 cut(s) 133
Eco130I CCWWGG 1 cut(s) 133
Eco47I GGWCC 1 cut(s) 335
EcoRII CCWGG 2 cut(s) 241, 289
EcoT14I CCWWGG 1 cut(s) 133
EcoT22I ATGCAT 1 cut(s) 158
ErhI CCWWGG 1 cut(s) 133
FaeI CATG 3 cut(s) 156, 160, 302
FalI AAGNNNNNCTT 2 cut(s) 523, 555
FatI CATG 3 cut(s) 152, 156, 298
FauNDI CATATG 1 cut(s) 569
FbaI TGATCA 1 cut(s) 112
FblI GTMKAC 1 cut(s) 342
Fnu4HI GCNGC 4 cut(s) 8, 63, 228, 528
FokI GGATG 2 cut(s) 261, 476
Fsp4HI GCNGC 4 cut(s) 8, 63, 228, 528
FspBI CTAG 5 cut(s) 29, 128, 161, 231, 308
GluI GCNGC 4 cut(s) 8, 63, 228, 528
GsuI CTGGAG 1 cut(s) 225
Hin1II CATG 3 cut(s) 156, 160, 302
HinfI GANTC 3 cut(s) 201, 441, 585
Hpy166II GTNNAC 3 cut(s) 272, 343, 484
Hpy188III TCNNGA 5 cut(s) 121, 198, 278, 299, 508
Hpy8I GTNNAC 3 cut(s) 272, 343, 484
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 1 cut(s) 549
HpyCH4III ACNGT 1 cut(s) 349
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 2 cut(s) 156, 530
HpyF3I CTNAG 1 cut(s) 266
HpySE526I ACGT 1 cut(s) 93
Hsp92II CATG 3 cut(s) 156, 160, 302
KpnI GGTACC 1 cut(s) 538
Ksp22I TGATCA 1 cut(s) 112
Kzo9I GATC 4 cut(s) 18, 112, 164, 412
LpnPI CCDG 7 cut(s) 228, 255, 276, 291, 303, 351, 458
Lsp1109I GCAGC 2 cut(s) 49, 514
LweI GCATC 2 cut(s) 92, 603
MaeI CTAG 5 cut(s) 29, 128, 161, 231, 308
MaeII ACGT 1 cut(s) 93
MalI GATC 4 cut(s) 20, 114, 166, 414
MboI GATC 4 cut(s) 18, 112, 164, 412
MboII GAAGA 1 cut(s) 150
MhlI GDGCHC 1 cut(s) 329
MluCI AATT 2 cut(s) 175, 424
MnlI CCTC 1 cut(s) 553
Mph1103I ATGCAT 1 cut(s) 158
MseI TTAA 1 cut(s) 174
MslI CAYNNNNRTG 2 cut(s) 54, 500
MspR9I CCNGG 2 cut(s) 243, 291
MvaI CCWGG 2 cut(s) 243, 291
NdeI CATATG 1 cut(s) 569
NdeII GATC 4 cut(s) 18, 112, 164, 412
NlaIII CATG 3 cut(s) 156, 160, 302
NlaIV GGNNCC 2 cut(s) 458, 536
NsiI ATGCAT 1 cut(s) 158
NspI RCATGY 2 cut(s) 156, 160
PaeI GCATGC 1 cut(s) 160
PagI TCATGA 1 cut(s) 298
PfeI GAWTC 3 cut(s) 201, 441, 585
PfoI TCCNGGA 1 cut(s) 241
PkrI GCNGC 4 cut(s) 9, 64, 229, 529
Psp6I CCWGG 2 cut(s) 241, 289
PspGI CCWGG 2 cut(s) 241, 289
PspN4I GGNNCC 2 cut(s) 458, 536
PspPI GGNCC 1 cut(s) 335
RsaI GTAC 3 cut(s) 33, 351, 536
RsaNI GTAC 3 cut(s) 32, 350, 535
RseI CAYNNNNRTG 2 cut(s) 54, 500
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 4 cut(s) 8, 63, 228, 528
Sau3AI GATC 4 cut(s) 18, 112, 164, 412
Sau96I GGNCC 1 cut(s) 335
ScaI AGTACT 1 cut(s) 33
ScrFI CCNGG 2 cut(s) 243, 291
SduI GDGCHC 1 cut(s) 329
SetI ASST 8 cut(s) 64, 80, 96, 129, 309, 340, 524, 536
SfaNI GCATC 2 cut(s) 92, 603
SinI GGWCC 1 cut(s) 335
SmiMI CAYNNNNRTG 2 cut(s) 54, 500
SphI GCATGC 1 cut(s) 160
Sse9I AATT 2 cut(s) 175, 424
SsiI CCGC 3 cut(s) 7, 105, 227
SspI AATATT 1 cut(s) 361
SspMI CTAG 5 cut(s) 29, 128, 161, 231, 308
StyD4I CCNGG 2 cut(s) 241, 289
StyI CCWWGG 1 cut(s) 133
TaaI ACNGT 1 cut(s) 349
TaiI ACGT 1 cut(s) 96
TaqI TCGA 2 cut(s) 100, 122
TasI AATT 2 cut(s) 175, 424
TatI WGTACW 2 cut(s) 31, 349
TauI GCSGC 2 cut(s) 10, 230
TfiI GAWTC 3 cut(s) 201, 441, 585
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TscAI CASTG 1 cut(s) 352
TseI GCWGC 2 cut(s) 62, 527
TspDTI ATGAA 4 cut(s) 59, 99, 227, 389
TspRI CASTG 1 cut(s) 352
VpaK11BI GGWCC 1 cut(s) 335
XapI RAATTY 1 cut(s) 424
XceI RCATGY 2 cut(s) 156, 160
XmiI GTMKAC 1 cut(s) 342
XspI CTAG 5 cut(s) 29, 128, 161, 231, 308
ZrmI AGTACT 1 cut(s) 33
Zsp2I ATGCAT 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.