Prupe.8G201000_v2.0.a1

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
18995896 .. 18997553
1658 bp
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UTR
Exon/CDS
Intron
Prupe.8G201000.1

Sequence Viewer

Length: 870 bp
ATGGCTTTTCCAGTGTTGGGTTTCTTTGTGTTTTTGCTGCTACTTGTTGGTGGCACAATTGCAAGCAACAACGACGACAGTGCCTTTGATAAAAATTATGAAATCACATGGGGAAATGATCATGTTTTGTCTCTTAATCAGGGAAGAGAAATCCAGCTTTCGTTGGATAGCCGTTCGGGGTCTGGATTTGGATCGTACCTAAAGTACAGTTCGGGGTTCTTTCATATGAGGATGAAGATACCAGGGAACAATAGTACTGCAGGAGTTATTACAACTTTTTATCTAACTTCAAAGACTAGTCGACATGATGAGCTGGACTTTGAGTTTTTGGGTAATGCAGAAGGTGAAGCAATCACGCTGCAGACAAATGTGTTTGTAAATGGTGTAGGCGGCAGAGAGCAAAGGATTCACCTATGGTTTGACCCAACATCACATTTTCATGATTATAAACTTCTTTGGAACCCTCGTCAAATTGTATTCTTTATCGACGACACTCCAATTAGAGTTTTCAATAACTACACGAATTTGGGAGTTCCCTACCCAACACAGCCTATGAGAATTGAAGCAACCTTGTGGAATGGAGATTGGGCATCTCCACAAAAGATAAATTGGGCATATGCACCTTTTAGAGCTGACTACCAAGGATTTGACATAAGTGGATGCTCAACACAGAGCTCCAACGTTGAAGAATGTTATAAATCCAATTATTGGTGGAACAATAGGAATTATTGGGAACTGAACCCTACCCAAAAACAAGCATATGAGAATGTGAGGAAGAAATATATGAACTATGACTATTGTAATGATAAGCCCCGATTCCCTTTTGGGCTTCCCAAAGAGTGCAATATTCAGAAAAATTATAAACTATAA

Protein Analysis

290

Amino Acids

33.55

Weight (kDa)

6.31

Isoelectric Point (pI)

35.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 447, 696, 861
AccB7I CCANNNNNTGG 1 cut(s) 708
AccI GTMKAC 1 cut(s) 301
AciI CCGC 1 cut(s) 390
AclI AACGTT 1 cut(s) 681
AclWI GGATC 1 cut(s) 199
AcsI RAATTY 1 cut(s) 523
AfaI GTAC 3 cut(s) 197, 206, 256
AfiI CCNNNNNNNGG 2 cut(s) 17, 708
AgsI TTSAA 4 cut(s) 291, 511, 563, 686
AhlI ACTAGT 1 cut(s) 296
AjnI CCWGG 1 cut(s) 241
AluBI AGCT 4 cut(s) 157, 313, 632, 675
AluI AGCT 4 cut(s) 157, 313, 632, 675
Alw21I GWGCWC 1 cut(s) 677
Alw26I GTCTC 1 cut(s) 135
AlwI GGATC 1 cut(s) 199
ApeKI GCWGC 2 cut(s) 37, 358
ApoI RAATTY 1 cut(s) 523
ArsI GACNNNNNNTTYG 2 cut(s) 68, 100
AsuHPI GGTGA 2 cut(s) 356, 401
BanII GRGCYC 1 cut(s) 677
Bbv12I GWGCWC 1 cut(s) 677
BbvI GCAGC 2 cut(s) 24, 345
BceAI ACGGC 1 cut(s) 156
BcgI CGANNNNNNTGC 2 cut(s) 62, 96
BciT130I CCWGG 1 cut(s) 243
BclI TGATCA 1 cut(s) 118
BcoDI GTCTC 1 cut(s) 135
BcuI ACTAGT 1 cut(s) 296
BfaI CTAG 1 cut(s) 297
BfmI CTRYAG 2 cut(s) 258, 359
BisI GCNGC 3 cut(s) 38, 359, 391
BlsI GCNGC 3 cut(s) 39, 360, 392
BmcAI AGTACT 1 cut(s) 256
Bme1390I CCNGG 1 cut(s) 243
BmiI GGNNCC 1 cut(s) 461
BmrFI CCNGG 1 cut(s) 243
BmsI GCATC 2 cut(s) 599, 650
BsaBI GATNNNNATC 1 cut(s) 190
BsaJI CCNNGG 2 cut(s) 242, 640
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 708
Bse1I ACTGG 1 cut(s) 11
Bse8I GATNNNNATC 1 cut(s) 190
BseBI CCWGG 1 cut(s) 243
BseDI CCNNGG 2 cut(s) 242, 640
BseGI GGATG 2 cut(s) 237, 665
BseJI GATNNNNATC 1 cut(s) 190
BseLI CCNNNNNNNGG 2 cut(s) 17, 708
BseNI ACTGG 1 cut(s) 11
BseXI GCAGC 2 cut(s) 24, 345
BsiHKAI GWGCWC 1 cut(s) 677
BslI CCNNNNNNNGG 2 cut(s) 17, 708
BsmAI GTCTC 1 cut(s) 135
Bsp1286I GDGCHC 1 cut(s) 677
Bsp143I GATC 2 cut(s) 118, 191
BspACI CCGC 1 cut(s) 390
BspHI TCATGA 1 cut(s) 439
BspLI GGNNCC 1 cut(s) 461
BspMAI CTGCAG 2 cut(s) 262, 363
BspPI GGATC 1 cut(s) 199
BsrI ACTGG 1 cut(s) 11
BssECI CCNNGG 2 cut(s) 242, 640
BssMI GATC 2 cut(s) 118, 191
BssT1I CCWWGG 1 cut(s) 640
Bst2UI CCWGG 1 cut(s) 243
Bst4CI ACNGT 2 cut(s) 80, 209
Bst6I CTCTTC 1 cut(s) 139
BstC8I GCNNGC 1 cut(s) 64
BstF5I GGATG 2 cut(s) 237, 665
BstKTI GATC 2 cut(s) 121, 194
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 2 cut(s) 118, 191
BstNI CCWGG 1 cut(s) 243
BstSCI CCNGG 1 cut(s) 241
BstSFI CTRYAG 2 cut(s) 258, 359
BstV1I GCAGC 2 cut(s) 24, 345
BtsCI GGATG 2 cut(s) 237, 665
BtsIMutI CAGTG 2 cut(s) 18, 85
Cac8I GCNNGC 1 cut(s) 64
CciI TCATGA 1 cut(s) 439
Csp6I GTAC 3 cut(s) 196, 205, 255
CviAII CATG 4 cut(s) 108, 122, 305, 440
CviJI RGCY 9 cut(s) 5, 157, 171, 313, 550, 632, 675, 811, 829
CviKI_1 RGCY 9 cut(s) 5, 157, 171, 313, 550, 632, 675, 811, 829
CviQI GTAC 3 cut(s) 196, 205, 255
DpnI GATC 2 cut(s) 120, 193
DpnII GATC 2 cut(s) 118, 191
Eam1104I CTCTTC 1 cut(s) 139
EarI CTCTTC 1 cut(s) 139
Ecl136II GAGCTC 1 cut(s) 675
Eco130I CCWWGG 1 cut(s) 640
Eco24I GRGCYC 1 cut(s) 677
Eco53kI GAGCTC 1 cut(s) 675
EcoICRI GAGCTC 1 cut(s) 675
EcoRII CCWGG 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 640
EcoT38I GRGCYC 1 cut(s) 677
ErhI CCWWGG 1 cut(s) 640
FaeI CATG 4 cut(s) 111, 125, 308, 443
FatI CATG 4 cut(s) 107, 121, 304, 439
FauNDI CATATG 3 cut(s) 225, 616, 760
FbaI TGATCA 1 cut(s) 118
FblI GTMKAC 1 cut(s) 301
Fnu4HI GCNGC 3 cut(s) 38, 359, 391
FokI GGATG 2 cut(s) 244, 672
FriOI GRGCYC 1 cut(s) 677
Fsp4HI GCNGC 3 cut(s) 38, 359, 391
FspBI CTAG 1 cut(s) 297
GluI GCNGC 3 cut(s) 38, 359, 391
Hin1II CATG 4 cut(s) 111, 125, 308, 443
HincII GTYRAC 1 cut(s) 302
HindII GTYRAC 1 cut(s) 302
HinfI GANTC 2 cut(s) 406, 816
HphI GGTGA 2 cut(s) 356, 401
Hpy166II GTNNAC 1 cut(s) 302
Hpy188I TCNGA 1 cut(s) 852
Hpy188III TCNNGA 2 cut(s) 183, 440
Hpy8I GTNNAC 1 cut(s) 302
Hpy99I CGWCG 2 cut(s) 77, 491
HpyAV CCTTC 1 cut(s) 335
HpyCH4III ACNGT 2 cut(s) 80, 209
HpyCH4IV ACGT 1 cut(s) 681
HpyCH4V TGCA 6 cut(s) 62, 260, 338, 361, 620, 843
HpySE526I ACGT 1 cut(s) 681
Hsp92II CATG 4 cut(s) 111, 125, 308, 443
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 2 cut(s) 118, 191
LmnI GCTCC 1 cut(s) 680
LpnPI CCDG 8 cut(s) 24, 125, 167, 168, 228, 246, 255, 299
Lsp1109I GCAGC 2 cut(s) 24, 345
LweI GCATC 2 cut(s) 599, 650
MaeI CTAG 1 cut(s) 297
MaeII ACGT 1 cut(s) 681
MalI GATC 2 cut(s) 120, 193
MboI GATC 2 cut(s) 118, 191
MboII GAAGA 4 cut(s) 156, 247, 698, 787
MfeI CAATTG 1 cut(s) 57
MhlI GDGCHC 1 cut(s) 677
MmeI TCCRAC 2 cut(s) 144, 702
MnlI CCTC 3 cut(s) 222, 474, 765
MseI TTAA 1 cut(s) 135
MslI CAYNNNNRTG 1 cut(s) 438
MspR9I CCNGG 1 cut(s) 243
MunI CAATTG 1 cut(s) 57
MvaI CCWGG 1 cut(s) 243
NdeI CATATG 3 cut(s) 225, 616, 760
NdeII GATC 2 cut(s) 118, 191
NlaIII CATG 4 cut(s) 111, 125, 308, 443
NlaIV GGNNCC 1 cut(s) 461
PagI TCATGA 1 cut(s) 439
PfeI GAWTC 2 cut(s) 406, 816
PflMI CCANNNNNTGG 1 cut(s) 708
PkrI GCNGC 3 cut(s) 39, 360, 392
PsiI TTATAA 3 cut(s) 447, 696, 861
Psp124BI GAGCTC 1 cut(s) 677
Psp1406I AACGTT 1 cut(s) 681
Psp6I CCWGG 1 cut(s) 241
PspGI CCWGG 1 cut(s) 241
PspN4I GGNNCC 1 cut(s) 461
PstI CTGCAG 2 cut(s) 262, 363
RsaI GTAC 3 cut(s) 197, 206, 256
RsaNI GTAC 3 cut(s) 196, 205, 255
RseI CAYNNNNRTG 1 cut(s) 438
SacI GAGCTC 1 cut(s) 677
SalI GTCGAC 1 cut(s) 300
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 3 cut(s) 38, 359, 391
Sau3AI GATC 2 cut(s) 118, 191
ScaI AGTACT 1 cut(s) 256
ScrFI CCNGG 1 cut(s) 243
SduI GDGCHC 1 cut(s) 677
SfaNI GCATC 2 cut(s) 599, 650
SfcI CTRYAG 2 cut(s) 258, 359
SmiMI CAYNNNNRTG 1 cut(s) 438
SpeI ACTAGT 1 cut(s) 296
SsiI CCGC 1 cut(s) 390
SspI AATATT 1 cut(s) 847
SspMI CTAG 1 cut(s) 297
SstI GAGCTC 1 cut(s) 677
StyD4I CCNGG 1 cut(s) 241
StyI CCWWGG 1 cut(s) 640
TaaI ACNGT 2 cut(s) 80, 209
TaiI ACGT 1 cut(s) 684
TaqI TCGA 2 cut(s) 301, 486
TatI WGTACW 2 cut(s) 204, 254
TauI GCSGC 1 cut(s) 393
TfiI GAWTC 2 cut(s) 406, 816
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TscAI CASTG 2 cut(s) 18, 85
TseI GCWGC 2 cut(s) 37, 358
TspDTI ATGAA 5 cut(s) 114, 212, 248, 428, 800
TspRI CASTG 2 cut(s) 18, 85
Van91I CCANNNNNTGG 1 cut(s) 708
XapI RAATTY 1 cut(s) 523
XmiI GTMKAC 1 cut(s) 301
XspI CTAG 1 cut(s) 297
ZrmI AGTACT 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.