FvH4_3g26030

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001964
Physical Location & Seq
Reverse (-)
18849082 .. 18850474
1393 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g26030.t2

Sequence Viewer

Length: 795 bp
ATGATGTTTCTAGCATATTATATGACGGTGCTTTTTATTTTTGCCTTTTCATCACCAAGTATCAGTTGTACCGCTAAACATGTACCGTTTGAAGTAAACTACAATATCACATACAGTGCAGATCATACAAGATTTCTTAACCAACATGAAGAAATTGTGCTTTCCATAGATGAACATTCGGGAACGGGATTTAGATCCCAAAGGAAATATGGTTCTGGATTTTTTGGTGTAAGACTGAAGCTCCCAAGTAATGATACCACAGGAATCCTCACAACCTTCTATTTGATTTCGACACCGAACAATGATACATTACGACATGAAGTTGATTTTGAATTTTTGGGTAACAAGCAATCCCCTTATGTGCTAAGCACCAATGTGATTTCAAATGGCAACTTACATCGAGAGCAACAAATTTCTCTATGGTTATTTGTAGATGAAATCCCCATTAGAGTGTTTATAAACGACTCAATTATTGGACCTATTTTCCCAACAAAGCCAATGGAAATTCAAGGCACTATTTGGAATGCTACATGGGCTAAATCTGGATCATTGCCTGATTGGAGCCAAGGACCTTTTGAAGCACACTATCAAGGATTTGATATTGATGGGTGTCCTGCAACCAACTCGAACATTTCTGAATGTTATGATTCTAAGTATGCATGGAATGGTGGCAATTATACGTCCTTAAATCAAGATGAAGAAAGGGCATATGAAATTGTTAAGAAATACTATTTAAAATATGACTATTGTAATGCACACCATCCTTCACCCCCAGAATGCCTAATCAATAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_16 XET_C

Protein Analysis

265

Amino Acids

30.2

Weight (kDa)

5.3

Isoelectric Point (pI)

50.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 31 - 207 6e-44 Glycosyl hydrolases family 16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 458
AciI CCGC 1 cut(s) 72
AclWI GGATC 2 cut(s) 189, 553
AcsI RAATTY 3 cut(s) 332, 411, 504
AcuI CTGAAG 1 cut(s) 257
AfaI GTAC 2 cut(s) 70, 84
AflIII ACRYGT 1 cut(s) 79
AgsI TTSAA 5 cut(s) 92, 332, 384, 509, 578
AleI CACNNNNGTG 1 cut(s) 374
AloI GAACNNNNNNTCC 2 cut(s) 196, 228
AluBI AGCT 1 cut(s) 241
AluI AGCT 1 cut(s) 241
AlwI GGATC 2 cut(s) 189, 553
ApoI RAATTY 3 cut(s) 332, 411, 504
AspS9I GGNCC 2 cut(s) 476, 569
AsuHPI GGTGA 2 cut(s) 45, 759
AvaII GGWCC 2 cut(s) 476, 569
BccI CCATC 2 cut(s) 599, 768
BcgI CGANNNNNNTGC 2 cut(s) 606, 640
BfaI CTAG 1 cut(s) 11
BlpI GCTNAGC 1 cut(s) 365
Bme18I GGWCC 2 cut(s) 476, 569
BmgT120I GGNCC 2 cut(s) 476, 569
BmiI GGNNCC 1 cut(s) 563
Bpu1102I GCTNAGC 1 cut(s) 365
BsaBI GATNNNNATC 1 cut(s) 193
BsaJI CCNNGG 1 cut(s) 565
BsaXI ACNNNNNCTCC 2 cut(s) 225, 255
Bse3DI GCAATG 1 cut(s) 548
Bse8I GATNNNNATC 1 cut(s) 193
BseDI CCNNGG 1 cut(s) 565
BseGI GGATG 1 cut(s) 760
BseJI GATNNNNATC 1 cut(s) 193
BseMI GCAATG 1 cut(s) 548
BsgI GTGCAG 1 cut(s) 138
BsmI GAATGC 2 cut(s) 529, 782
Bsp143I GATC 3 cut(s) 121, 194, 545
Bsp1720I GCTNAGC 1 cut(s) 365
BspACI CCGC 1 cut(s) 72
BspLI GGNNCC 1 cut(s) 563
BspPI GGATC 2 cut(s) 189, 553
BsrDI GCAATG 1 cut(s) 548
BssECI CCNNGG 1 cut(s) 565
BssMI GATC 3 cut(s) 121, 194, 545
BssT1I CCWWGG 1 cut(s) 565
Bst4CI ACNGT 3 cut(s) 28, 87, 116
BstDEI CTNAG 2 cut(s) 365, 651
BstF5I GGATG 1 cut(s) 760
BstKTI GATC 3 cut(s) 124, 197, 548
BstMBI GATC 3 cut(s) 121, 194, 545
BstMWI GCNNNNNNNGC 1 cut(s) 533
BstNSI RCATGY 1 cut(s) 83
BstX2I RGATCY 1 cut(s) 194
BstYI RGATCY 1 cut(s) 194
BtsCI GGATG 1 cut(s) 760
BtsIMutI CAGTG 1 cut(s) 121
Cfr13I GGNCC 2 cut(s) 476, 569
Csp6I GTAC 2 cut(s) 69, 83
CviAII CATG 5 cut(s) 80, 146, 317, 531, 660
CviJI RGCY 4 cut(s) 241, 496, 536, 564
CviKI_1 RGCY 4 cut(s) 241, 496, 536, 564
CviQI GTAC 2 cut(s) 69, 83
DdeI CTNAG 2 cut(s) 365, 651
DpnI GATC 3 cut(s) 123, 196, 547
DpnII GATC 3 cut(s) 121, 194, 545
DraI TTTAAA 1 cut(s) 735
Eco130I CCWWGG 1 cut(s) 565
Eco47I GGWCC 2 cut(s) 476, 569
Eco57I CTGAAG 1 cut(s) 257
EcoO109I RGGNCCY 1 cut(s) 569
EcoT14I CCWWGG 1 cut(s) 565
EcoT22I ATGCAT 1 cut(s) 661
ErhI CCWWGG 1 cut(s) 565
FaeI CATG 5 cut(s) 83, 149, 320, 534, 663
FatI CATG 5 cut(s) 79, 145, 316, 530, 659
FauNDI CATATG 1 cut(s) 709
FokI GGATG 1 cut(s) 747
FspBI CTAG 1 cut(s) 11
Hin1II CATG 5 cut(s) 83, 149, 320, 534, 663
HinfI GANTC 3 cut(s) 264, 464, 647
HphI GGTGA 2 cut(s) 45, 759
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 1 cut(s) 637
Hpy188III TCNNGA 5 cut(s) 180, 216, 401, 543, 692
Hpy8I GTNNAC 1 cut(s) 97
HpyAV CCTTC 2 cut(s) 286, 774
HpyCH4III ACNGT 3 cut(s) 28, 87, 116
HpyCH4IV ACGT 1 cut(s) 680
HpyCH4V TGCA 4 cut(s) 119, 617, 659, 755
HpyF10VI GCNNNNNNNGC 1 cut(s) 533
HpyF3I CTNAG 2 cut(s) 365, 651
HpySE526I ACGT 1 cut(s) 680
Hsp92II CATG 5 cut(s) 83, 149, 320, 534, 663
Kzo9I GATC 3 cut(s) 121, 194, 545
LmnI GCTCC 2 cut(s) 246, 561
LpnPI CCDG 6 cut(s) 201, 246, 528, 567, 627, 786
MaeI CTAG 1 cut(s) 11
MaeII ACGT 1 cut(s) 680
MaeIII GTNAC 1 cut(s) 341
MalI GATC 3 cut(s) 123, 196, 547
MboI GATC 3 cut(s) 121, 194, 545
MboII GAAGA 2 cut(s) 161, 710
MflI RGATCY 1 cut(s) 194
MluCI AATT 8 cut(s) 153, 332, 411, 468, 504, 673, 714, 790
MlyI GAGTC 1 cut(s) 458
MnlI CCTC 1 cut(s) 278
Mph1103I ATGCAT 1 cut(s) 661
MseI TTAA 4 cut(s) 138, 686, 720, 734
MslI CAYNNNNRTG 2 cut(s) 374, 449
Mva1269I GAATGC 2 cut(s) 529, 782
MwoI GCNNNNNNNGC 1 cut(s) 533
NdeI CATATG 1 cut(s) 709
NdeII GATC 3 cut(s) 121, 194, 545
NlaIII CATG 5 cut(s) 83, 149, 320, 534, 663
NlaIV GGNNCC 1 cut(s) 563
NsiI ATGCAT 1 cut(s) 661
NspI RCATGY 1 cut(s) 83
OliI CACNNNNGTG 1 cut(s) 374
PciI ACATGT 1 cut(s) 79
PctI GAATGC 2 cut(s) 529, 782
PfeI GAWTC 2 cut(s) 264, 647
PleI GAGTC 1 cut(s) 458
PpsI GAGTC 1 cut(s) 458
PpuMI RGGWCCY 1 cut(s) 569
PscI ACATGT 1 cut(s) 79
PsiI TTATAA 1 cut(s) 458
Psp5II RGGWCCY 1 cut(s) 569
PspN4I GGNNCC 1 cut(s) 563
PspPI GGNCC 2 cut(s) 476, 569
PspPPI RGGWCCY 1 cut(s) 569
PsuI RGATCY 1 cut(s) 194
RsaI GTAC 2 cut(s) 70, 84
RsaNI GTAC 2 cut(s) 69, 83
RseI CAYNNNNRTG 2 cut(s) 374, 449
SaqAI TTAA 4 cut(s) 138, 686, 720, 734
Sau3AI GATC 3 cut(s) 121, 194, 545
Sau96I GGNCC 2 cut(s) 476, 569
SchI GAGTC 1 cut(s) 458
SetI ASST 5 cut(s) 243, 278, 481, 574, 683
SinI GGWCC 2 cut(s) 476, 569
SmiMI CAYNNNNRTG 2 cut(s) 374, 449
Sse9I AATT 8 cut(s) 153, 332, 411, 468, 504, 673, 714, 790
SsiI CCGC 1 cut(s) 72
SspMI CTAG 1 cut(s) 11
StyI CCWWGG 1 cut(s) 565
TaaI ACNGT 3 cut(s) 28, 87, 116
TaiI ACGT 1 cut(s) 683
TaqI TCGA 3 cut(s) 290, 400, 626
TasI AATT 8 cut(s) 153, 332, 411, 468, 504, 673, 714, 790
TfiI GAWTC 2 cut(s) 264, 647
Tru1I TTAA 4 cut(s) 138, 686, 720, 734
Tru9I TTAA 4 cut(s) 138, 686, 720, 734
TscAI CASTG 1 cut(s) 121
TspDTI ATGAA 7 cut(s) 39, 162, 186, 333, 450, 711, 726
TspRI CASTG 1 cut(s) 121
VpaK11BI GGWCC 2 cut(s) 476, 569
XapI RAATTY 3 cut(s) 332, 411, 504
XceI RCATGY 1 cut(s) 83
XcmI CCANNNNNNNNNTGG 1 cut(s) 206
XspI CTAG 1 cut(s) 11
Zsp2I ATGCAT 1 cut(s) 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.