Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0001964

Physical Location & Seq

Genomic Coordinates Forward (+)

7782649 .. 7784051

Gene Structure 1403 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1093100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGTGTGTGTGTGTGATTTCAGGTTTTGACTTGTTTTTATGGCAGTTAATTTCGCAACCGAATGATGATGAGCAACGACATGAGGTGGATTTTGAGTTCTTAGGTTCTAATACACAACATTATCTGCTAAGCACAAATGTGATTTCCCATGGCAACCTACATAGAGAGCAGCAGTTTGCTTTATGGTTTGATCCTGCTGCAGATTTGCATTTTTACCAAATTCTGTGGAATCGACACCAATTAGTGTTATTTGTGGATGGCACCCCTATAAGAGTGTTGAAGAATGGCCCAAGTATTGAAGGGATTTTTCCAACAAAACCCATGGAAATACAAGGCACCATATGGAATGCAACATGGGGATCCCAAGGAAAAGCAGTTAACCGGGGTGAAGGACCTTTCCATGCCTACTATCAAGGATTTGGCGTTGATGGGTGTTTAACCAAGTTGAATAATCCTCAAGAATGCTATGGTCTCAACTATGAGTGGAACAGAAAAGAGTTATGGGCATTAAACCAGCATCAGCAAAAGGCATATGAGCATGTTAGAAGGAAGTACTTAACATATGACTACTGCACGAAGACCAGCAGTCCAACCCCAGAATGCAACATCAACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

206

Amino Acids

23.91

Weight (kDa)

5.96

Isoelectric Point (pI)

40.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	21 - 118	1.9e-28	Glycosyl hydrolases family 16
XET_C	PF06955	161 - 192	7.4e-09	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25050 AT4G13080 AT4G13090
fragaria_vesca	FvH4_2g18760 FvH4_2g18761 FvH4_3g26030 FvH4_3g26030
malus_domestica	MD03G1093100.v1.1 MD05G1173300.v1.1 MD05G1173400.v1.1 MD05G1173600.v1.1
prunus_persica	Prupe.8G200900_v2.0.a1 Prupe.8G200900_v2.0.a1 Prupe.8G200900_v2.0.a1 Prupe.8G201000_v2.0.a1
pyrus_communis	pycom05g16020 pycom05g16030 pycom05g16040
rosa_chinensis	RchiOBHm_Chr5g0047321 RchiOBHm_Chr6g0284451 RchiOBHm_Chr6g0284461 RchiOBHm_Chr6g0284491
rosa_laevigata	RLG00000012742 RLG00000012743
rosa_roxburghii	Rroxscaffold_1G00034030 Rroxscaffold_7G00184670 Rroxscaffold_7G00184680 Rroxscaffold_7G00184690
rosa_rugosa	Rorug05G0235900 Rorug06G0163800
rosa_samantha	Rh5BG323400 Rh5CG350600 Rh5DG334400 Rh6AG276600 Rh6AG276900 Rh6BG276600 Rh6BG276700 Rh6CG278600 Rh6CG278700 Rh6CG278900 Rh6DG271000 Rh6DG271100 Rh6DG271300
rosa_wichuraiana	Rw6G023760 Rw6G023770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	260, 335
AclWI	GGATC	3 cut(s)	185, 354, 367
AcsI	RAATTY	1 cut(s)	219
AfaI	GTAC	1 cut(s)	554
AgsI	TTSAA	3 cut(s)	280, 299, 448
AhdI	GACNNNNNGTC	1 cut(s)	585
AleI	CACNNNNGTG	1 cut(s)	137
AloI	GAACNNNNNNTCC	2 cut(s)	80, 112
Alw26I	GTCTC	1 cut(s)	476
AlwI	GGATC	3 cut(s)	185, 354, 367
AoxI	GGCC	1 cut(s)	286
ApeKI	GCWGC	2 cut(s)	169, 197
ApoI	RAATTY	1 cut(s)	219
AspS9I	GGNCC	2 cut(s)	287, 392
AsuC2I	CCSGG	1 cut(s)	383
AsuHPI	GGTGA	1 cut(s)	398
AvaII	GGWCC	1 cut(s)	392
BamHI	GGATCC	1 cut(s)	359
BanI	GGYRCC	2 cut(s)	260, 335
BbsI	GAAGAC	1 cut(s)	584
BbvI	GCAGC	2 cut(s)	181, 184
BccI	CCATC	2 cut(s)	251, 422
BcnI	CCSGG	1 cut(s)	383
BcoDI	GTCTC	1 cut(s)	476
BfaI	CTAG	1 cut(s)	616
BfmI	CTRYAG	1 cut(s)	198
BisI	GCNGC	2 cut(s)	170, 198
BlpI	GCTNAGC	1 cut(s)	128
BlsI	GCNGC	2 cut(s)	171, 199
BmcAI	AGTACT	1 cut(s)	554
Bme1390I	CCNGG	1 cut(s)	383
Bme18I	GGWCC	1 cut(s)	392
BmeRI	GACNNNNNGTC	1 cut(s)	585
BmgT120I	GGNCC	2 cut(s)	287, 392
BmiI	GGNNCC	3 cut(s)	262, 337, 361
BmrFI	CCNGG	1 cut(s)	383
BmsI	GCATC	1 cut(s)	526
BpiI	GAAGAC	1 cut(s)	584
Bpu1102I	GCTNAGC	1 cut(s)	128
BpuEI	CTTGAG	1 cut(s)	441
BpuMI	CCSGG	1 cut(s)	383
BsaI	GGTCTC	1 cut(s)	476
BsaJI	CCNNGG	4 cut(s)	148, 321, 364, 382
BseDI	CCNNGG	4 cut(s)	148, 321, 364, 382
BseGI	GGATG	1 cut(s)	262
BseXI	GCAGC	2 cut(s)	181, 184
BsgI	GTGCAG	1 cut(s)	556
BshFI	GGCC	1 cut(s)	288
BshNI	GGYRCC	2 cut(s)	260, 335
BsiSI	CCGG	1 cut(s)	382
BsmAI	GTCTC	1 cut(s)	476
BsmI	GAATGC	3 cut(s)	352, 467, 605
BsnI	GGCC	1 cut(s)	288
Bso31I	GGTCTC	1 cut(s)	476
Bsp143I	GATC	2 cut(s)	190, 359
Bsp1720I	GCTNAGC	1 cut(s)	128
Bsp19I	CCATGG	2 cut(s)	148, 321
BspANI	GGCC	1 cut(s)	288
BspLI	GGNNCC	3 cut(s)	262, 337, 361
BspMAI	CTGCAG	1 cut(s)	202
BspPI	GGATC	3 cut(s)	185, 354, 367
BspT107I	GGYRCC	2 cut(s)	260, 335
BspTNI	GGTCTC	1 cut(s)	476
BssECI	CCNNGG	4 cut(s)	148, 321, 364, 382
BssMI	GATC	2 cut(s)	190, 359
BssT1I	CCWWGG	3 cut(s)	148, 321, 364
BstDEI	CTNAG	2 cut(s)	100, 128
BstDSI	CCRYGG	2 cut(s)	148, 321
BstF5I	GGATG	1 cut(s)	262
BstKTI	GATC	2 cut(s)	193, 362
BstMAI	GTCTC	1 cut(s)	476
BstMBI	GATC	2 cut(s)	190, 359
BstNSI	RCATGY	1 cut(s)	542
BstSCI	CCNGG	1 cut(s)	381
BstSFI	CTRYAG	1 cut(s)	198
BstV1I	GCAGC	2 cut(s)	181, 184
BstV2I	GAAGAC	1 cut(s)	584
BstX2I	RGATCY	1 cut(s)	359
BstYI	RGATCY	1 cut(s)	359
BsuRI	GGCC	1 cut(s)	288
BtgI	CCRYGG	2 cut(s)	148, 321
BtsCI	GGATG	1 cut(s)	262
Cfr13I	GGNCC	2 cut(s)	287, 392
Csp6I	GTAC	1 cut(s)	553
CspCI	CAANNNNNGTGG	2 cut(s)	206, 241
CviAII	CATG	6 cut(s)	80, 149, 322, 354, 401, 539
CviJI	RGCY	1 cut(s)	288
CviKI_1	RGCY	1 cut(s)	288
CviQI	GTAC	1 cut(s)	553
DdeI	CTNAG	2 cut(s)	100, 128
DpnI	GATC	2 cut(s)	192, 361
DpnII	GATC	2 cut(s)	190, 359
DriI	GACNNNNNGTC	1 cut(s)	585
Eam1105I	GACNNNNNGTC	1 cut(s)	585
Eco130I	CCWWGG	3 cut(s)	148, 321, 364
Eco31I	GGTCTC	1 cut(s)	476
Eco47I	GGWCC	1 cut(s)	392
EcoO109I	RGGNCCY	1 cut(s)	392
EcoT14I	CCWWGG	3 cut(s)	148, 321, 364
ErhI	CCWWGG	3 cut(s)	148, 321, 364
FaeI	CATG	6 cut(s)	83, 152, 325, 357, 404, 542
FatI	CATG	6 cut(s)	79, 148, 321, 353, 400, 538
FauNDI	CATATG	3 cut(s)	341, 532, 562
Fnu4HI	GCNGC	2 cut(s)	170, 198
FokI	GGATG	1 cut(s)	269
Fsp4HI	GCNGC	2 cut(s)	170, 198
FspBI	CTAG	1 cut(s)	616
GluI	GCNGC	2 cut(s)	170, 198
HaeIII	GGCC	1 cut(s)	288
HapII	CCGG	1 cut(s)	382
Hin1II	CATG	6 cut(s)	83, 152, 325, 357, 404, 542
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HinfI	GANTC	1 cut(s)	229
HpaI	GTTAAC	1 cut(s)	379
HpaII	CCGG	1 cut(s)	382
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188III	TCNNGA	1 cut(s)	458
Hpy8I	GTNNAC	1 cut(s)	379
HpyAV	CCTTC	3 cut(s)	293, 383, 540
HpyCH4V	TGCA	5 cut(s)	200, 208, 350, 573, 603
HpyF3I	CTNAG	2 cut(s)	100, 128
Hsp92II	CATG	6 cut(s)	83, 152, 325, 357, 404, 542
KspAI	GTTAAC	1 cut(s)	379
Kzo9I	GATC	2 cut(s)	190, 359
LpnPI	CCDG	6 cut(s)	6, 207, 395, 527, 595, 609
Lsp1109I	GCAGC	2 cut(s)	181, 184
LweI	GCATC	1 cut(s)	526
MaeI	CTAG	1 cut(s)	616
MalI	GATC	2 cut(s)	192, 361
MboI	GATC	2 cut(s)	190, 359
MboII	GAAGA	2 cut(s)	292, 589
MflI	RGATCY	1 cut(s)	359
MluCI	AATT	3 cut(s)	48, 219, 239
MmeI	TCCRAC	2 cut(s)	335, 614
MnlI	CCTC	2 cut(s)	76, 465
MseI	TTAA	5 cut(s)	47, 378, 437, 509, 557
MslI	CAYNNNNRTG	1 cut(s)	137
MspI	CCGG	1 cut(s)	382
MspR9I	CCNGG	1 cut(s)	383
Mva1269I	GAATGC	3 cut(s)	352, 467, 605
NciI	CCSGG	1 cut(s)	383
NcoI	CCATGG	2 cut(s)	148, 321
NdeI	CATATG	3 cut(s)	341, 532, 562
NdeII	GATC	2 cut(s)	190, 359
NlaIII	CATG	6 cut(s)	83, 152, 325, 357, 404, 542
NlaIV	GGNNCC	3 cut(s)	262, 337, 361
NspI	RCATGY	1 cut(s)	542
OliI	CACNNNNGTG	1 cut(s)	137
PctI	GAATGC	3 cut(s)	352, 467, 605
PfeI	GAWTC	1 cut(s)	229
PkrI	GCNGC	2 cut(s)	171, 199
PpuMI	RGGWCCY	1 cut(s)	392
Psp5II	RGGWCCY	1 cut(s)	392
PspN4I	GGNNCC	3 cut(s)	262, 337, 361
PspPI	GGNCC	2 cut(s)	287, 392
PspPPI	RGGWCCY	1 cut(s)	392
PstI	CTGCAG	1 cut(s)	202
PsuI	RGATCY	1 cut(s)	359
RsaI	GTAC	1 cut(s)	554
RsaNI	GTAC	1 cut(s)	553
RseI	CAYNNNNRTG	1 cut(s)	137
SaqAI	TTAA	5 cut(s)	47, 378, 437, 509, 557
SatI	GCNGC	2 cut(s)	170, 198
Sau3AI	GATC	2 cut(s)	190, 359
Sau96I	GGNCC	2 cut(s)	287, 392
ScaI	AGTACT	1 cut(s)	554
ScrFI	CCNGG	1 cut(s)	383
SetI	ASST	5 cut(s)	25, 87, 106, 159, 397
SfaNI	GCATC	1 cut(s)	526
SfcI	CTRYAG	1 cut(s)	198
SinI	GGWCC	1 cut(s)	392
SmiMI	CAYNNNNRTG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	456
SmoI	CTYRAG	1 cut(s)	456
Sse9I	AATT	3 cut(s)	48, 219, 239
SspMI	CTAG	1 cut(s)	616
StyD4I	CCNGG	1 cut(s)	381
StyI	CCWWGG	3 cut(s)	148, 321, 364
TaqI	TCGA	1 cut(s)	232
TasI	AATT	3 cut(s)	48, 219, 239
TatI	WGTACW	1 cut(s)	552
TfiI	GAWTC	1 cut(s)	229
Tru1I	TTAA	5 cut(s)	47, 378, 437, 509, 557
Tru9I	TTAA	5 cut(s)	47, 378, 437, 509, 557
TseI	GCWGC	2 cut(s)	169, 197
VpaK11BI	GGWCC	1 cut(s)	392
XapI	RAATTY	1 cut(s)	219
XceI	RCATGY	1 cut(s)	542
XspI	CTAG	1 cut(s)	616
ZrmI	AGTACT	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.