Rh6CG278900

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001964
Physical Location & Seq
Reverse (-)
45551129 .. 45552295
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG278900.1

Sequence Viewer

Length: 435 bp
ATGATGCGGCTTTCTTTGGTCTTCTTTCTAGCACTTGTTGTAATGAAACATACAAGTGAAGCCGCTGATAATGTTAGCTTTGATGAAACCTACGTCGTTCGATGCGGAAATGATCATATCTCGAAGCTAGACCAAGGAAGAGAAGTTCAGCTCTCTTTGGACTTCATGGACGGATCTCATCTCCGTAAGAGATATGACAAATTAATCAGGGTTGTGATTGTTGTTATATACATCTATGATTCTATGTCATATTTATTGGGTGATCTCATACTAGATATTTATTGGGGTTATAGCTTTTTTGTGGACAACATCCCCATTAGAGTGTTCAAGAACAATACAAGGTTGGCTGCAAGGTACCCTTCACAACAGATGTCTGTGGAGGGAAGCATATGGAATATATGGAGAATCTTGGGCATCAAGTGGGAAAAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_16 XET_C

Protein Analysis

144

Amino Acids

16.94

Weight (kDa)

6.83

Isoelectric Point (pI)

31.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 354
AccB1I GGYRCC 1 cut(s) 354
AciI CCGC 3 cut(s) 7, 63, 105
AclWI GGATC 1 cut(s) 181
AfaI GTAC 1 cut(s) 356
AgsI TTSAA 1 cut(s) 328
AloI GAACNNNNNNTCC 2 cut(s) 129, 161
AluBI AGCT 4 cut(s) 78, 127, 151, 294
AluI AGCT 4 cut(s) 78, 127, 151, 294
AlwI GGATC 1 cut(s) 181
ApeKI GCWGC 1 cut(s) 347
AseI ATTAAT 1 cut(s) 203
Asp718I GGTACC 1 cut(s) 354
AsuHPI GGTGA 1 cut(s) 272
BanI GGYRCC 1 cut(s) 354
BbsI GAAGAC 1 cut(s) 13
BbvI GCAGC 1 cut(s) 334
BclI TGATCA 1 cut(s) 112
BfaI CTAG 3 cut(s) 29, 128, 272
BisI GCNGC 3 cut(s) 8, 63, 348
BlsI GCNGC 3 cut(s) 9, 64, 349
BmiI GGNNCC 1 cut(s) 356
BmsI GCATC 2 cut(s) 92, 423
BpiI GAAGAC 1 cut(s) 13
BsaJI CCNNGG 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 133
BseGI GGATG 1 cut(s) 309
BseXI GCAGC 1 cut(s) 334
BshNI GGYRCC 1 cut(s) 354
Bsp143I GATC 3 cut(s) 112, 173, 262
BspACI CCGC 3 cut(s) 7, 63, 105
BspLI GGNNCC 1 cut(s) 356
BspPI GGATC 1 cut(s) 181
BspT107I GGYRCC 1 cut(s) 354
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 3 cut(s) 112, 173, 262
BssT1I CCWWGG 1 cut(s) 133
Bst6I CTCTTC 1 cut(s) 133
BstF5I GGATG 1 cut(s) 309
BstKTI GATC 3 cut(s) 115, 176, 265
BstMBI GATC 3 cut(s) 112, 173, 262
BstV1I GCAGC 1 cut(s) 334
BstV2I GAAGAC 1 cut(s) 13
BstX2I RGATCY 1 cut(s) 173
BstYI RGATCY 1 cut(s) 173
BtsCI GGATG 1 cut(s) 309
Csp6I GTAC 1 cut(s) 355
CviAII CATG 1 cut(s) 166
CviJI RGCY 7 cut(s) 10, 62, 78, 127, 151, 294, 347
CviKI_1 RGCY 7 cut(s) 10, 62, 78, 127, 151, 294, 347
CviQI GTAC 1 cut(s) 355
DpnI GATC 3 cut(s) 114, 175, 264
DpnII GATC 3 cut(s) 112, 173, 262
Eam1104I CTCTTC 1 cut(s) 133
EarI CTCTTC 1 cut(s) 133
Eco130I CCWWGG 1 cut(s) 133
EcoT14I CCWWGG 1 cut(s) 133
ErhI CCWWGG 1 cut(s) 133
FaeI CATG 1 cut(s) 169
FalI AAGNNNNNCTT 2 cut(s) 343, 375
FatI CATG 1 cut(s) 165
FauNDI CATATG 1 cut(s) 389
FbaI TGATCA 1 cut(s) 112
Fnu4HI GCNGC 3 cut(s) 8, 63, 348
FokI GGATG 1 cut(s) 296
Fsp4HI GCNGC 3 cut(s) 8, 63, 348
FspBI CTAG 3 cut(s) 29, 128, 272
GluI GCNGC 3 cut(s) 8, 63, 348
Hin1II CATG 1 cut(s) 169
HinfI GANTC 2 cut(s) 239, 405
HphI GGTGA 1 cut(s) 272
Hpy166II GTNNAC 1 cut(s) 304
Hpy188III TCNNGA 2 cut(s) 121, 328
Hpy8I GTNNAC 1 cut(s) 304
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 1 cut(s) 369
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 1 cut(s) 350
HpySE526I ACGT 1 cut(s) 93
Hsp92II CATG 1 cut(s) 169
KpnI GGTACC 1 cut(s) 358
Ksp22I TGATCA 1 cut(s) 112
Kzo9I GATC 3 cut(s) 112, 173, 262
LpnPI CCDG 1 cut(s) 193
Lsp1109I GCAGC 1 cut(s) 334
LweI GCATC 2 cut(s) 92, 423
MaeI CTAG 3 cut(s) 29, 128, 272
MaeII ACGT 1 cut(s) 93
MalI GATC 3 cut(s) 114, 175, 264
MboI GATC 3 cut(s) 112, 173, 262
MboII GAAGA 2 cut(s) 13, 150
MflI RGATCY 1 cut(s) 173
MluCI AATT 1 cut(s) 200
MnlI CCTC 1 cut(s) 373
MseI TTAA 2 cut(s) 203, 433
MslI CAYNNNNRTG 2 cut(s) 54, 320
MspA1I CMGCKG 1 cut(s) 65
NdeI CATATG 1 cut(s) 389
NdeII GATC 3 cut(s) 112, 173, 262
NlaIII CATG 1 cut(s) 169
NlaIV GGNNCC 1 cut(s) 356
PfeI GAWTC 2 cut(s) 239, 405
PkrI GCNGC 3 cut(s) 9, 64, 349
PshBI ATTAAT 1 cut(s) 203
PspN4I GGNNCC 1 cut(s) 356
PsuI RGATCY 1 cut(s) 173
RsaI GTAC 1 cut(s) 356
RsaNI GTAC 1 cut(s) 355
RseI CAYNNNNRTG 2 cut(s) 54, 320
SaqAI TTAA 2 cut(s) 203, 433
SatI GCNGC 3 cut(s) 8, 63, 348
Sau3AI GATC 3 cut(s) 112, 173, 262
SetI ASST 8 cut(s) 80, 92, 96, 129, 153, 296, 344, 356
SfaNI GCATC 2 cut(s) 92, 423
SmiMI CAYNNNNRTG 2 cut(s) 54, 320
Sse9I AATT 1 cut(s) 200
SsiI CCGC 3 cut(s) 7, 63, 105
SspMI CTAG 3 cut(s) 29, 128, 272
StyI CCWWGG 1 cut(s) 133
TaiI ACGT 1 cut(s) 96
TaqI TCGA 2 cut(s) 100, 122
TasI AATT 1 cut(s) 200
TauI GCSGC 2 cut(s) 10, 65
TfiI GAWTC 2 cut(s) 239, 405
Tru1I TTAA 2 cut(s) 203, 433
Tru9I TTAA 2 cut(s) 203, 433
TseI GCWGC 1 cut(s) 347
TspDTI ATGAA 3 cut(s) 59, 99, 154
TspGWI ACGGA 2 cut(s) 173, 186
VspI ATTAAT 1 cut(s) 203
XspI CTAG 3 cut(s) 29, 128, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.