Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001964

Physical Location & Seq

Genomic Coordinates Reverse (-)

7631535 .. 7632876

Gene Structure 1342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G13090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGAATAGGATAAGATATTGTTTTGAATTAGTTTCAGTATTGTTCTTGATGTTTACTGCTAATGCAAGAGCTCGTGGACGTGGAGCTATAGATTTCGATGTGAACTATGTCGTTACATGGGGACAAGATCATATCTTGAAACTCAACCAAGGAAAAGAAGTTCAGCTCTCCATGGATTATTCTTCAGGTTCTGGCTTTGAGTCTAAAAGCCACTACGGATCAGGATTCTTCCAAATGAGAATCAAATTGCCTCCAAGAGATTCCGCCGGTGTTGTCACAGCTTTCTACTTGACTTCTAAGGGAGACACCCACGATGAGGTTGACTTTGAGTTCTTGGGGAATAGACAAGGAAAACCGATAGCAATTCAAACAAATGTATTTAGCAATGGACAAGGAGGTAGAGAACAAAAGTTTGTTCCTTGGTTCGATCCCACTACAAGTTTCCACACTTATGGGATTCTTTGGAATCCGTATCAGATTGTGTTTTACGTGGACAAAGTTCCAATAAGAGTATTCAAGAATATCAAAAAAAGTGGTGTGAACTATCCATCAAAGCCCATGCAACTTGTGGCTAGTTTGTGGAACGGTGAGAACTGGGCAACAAGCGGTGGTAAAGAAAAGATAAATTGGGCCTATGCTCCATTTAAGGCTCAATACCAAGGCTTCTCCGACCATGGTTGTCACGTAAATGGTCAGAGCAATAATGCGAACGTTTGTGGTTCGACAAGGTACTGGTGGAACACAAGGACATATAGTCAGTTAAGTGCAAATGAGCAGAAGGTAATGGAGAATGTGAGAGCAAAGTACATGACCTATGATTATTGTTCTGATCGGCCTAGATATCCTGTTCCTCCTAGTGAATGTCGATGGAATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009832 GO:0009987 GO:0010228 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0022414 GO:0030243 GO:0032501 GO:0032502 GO:0042546 GO:0043170 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0046527 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051273 GO:0061458 GO:0071554 GO:0071669 GO:0071704 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

292

Amino Acids

33.52

Weight (kDa)

9.22

Isoelectric Point (pI)

27.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	33 - 211	1.1e-65	Glycosyl hydrolases family 16
XET_C	PF06955	241 - 288	2.7e-17	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25050 AT4G13080 AT4G13090
fragaria_vesca	FvH4_2g18760 FvH4_2g18761 FvH4_3g26030 FvH4_3g26030
malus_domestica	MD03G1093100.v1.1 MD05G1173300.v1.1 MD05G1173400.v1.1 MD05G1173600.v1.1
prunus_persica	Prupe.8G200900_v2.0.a1 Prupe.8G200900_v2.0.a1 Prupe.8G200900_v2.0.a1 Prupe.8G201000_v2.0.a1
pyrus_communis	pycom05g16020 pycom05g16030 pycom05g16040
rosa_chinensis	RchiOBHm_Chr5g0047321 RchiOBHm_Chr6g0284451 RchiOBHm_Chr6g0284461 RchiOBHm_Chr6g0284491
rosa_laevigata	RLG00000012742 RLG00000012743
rosa_roxburghii	Rroxscaffold_1G00034030 Rroxscaffold_7G00184670 Rroxscaffold_7G00184680 Rroxscaffold_7G00184690
rosa_rugosa	Rorug05G0235900 Rorug06G0163800
rosa_samantha	Rh5BG323400 Rh5CG350600 Rh5DG334400 Rh6AG276600 Rh6AG276900 Rh6BG276600 Rh6BG276700 Rh6CG278600 Rh6CG278700 Rh6CG278900 Rh6DG271000 Rh6DG271100 Rh6DG271300
rosa_wichuraiana	Rw6G023760 Rw6G023770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	264, 606
AclI	AACGTT	1 cut(s)	711
AclWI	GGATC	2 cut(s)	226, 422
AcuI	CTGAAG	1 cut(s)	168
AfaI	GTAC	2 cut(s)	731, 806
AfiI	CCNNNNNNNGG	1 cut(s)	316
AgsI	TTSAA	4 cut(s)	26, 139, 368, 517
AhdI	GACNNNNNGTC	1 cut(s)	753
AjiI	CACGTC	1 cut(s)	80
AloI	GAACNNNNNNTCC	2 cut(s)	144, 176
AluBI	AGCT	4 cut(s)	71, 86, 166, 281
AluI	AGCT	4 cut(s)	71, 86, 166, 281
Alw21I	GWGCWC	1 cut(s)	73
Alw26I	GTCTC	1 cut(s)	297
AlwI	GGATC	2 cut(s)	226, 422
AlwNI	CAGNNNCTG	1 cut(s)	191
AoxI	GGCC	2 cut(s)	630, 833
AspS9I	GGNCC	1 cut(s)	630
AsuHPI	GGTGA	1 cut(s)	599
BanII	GRGCYC	1 cut(s)	73
BauI	CACGAG	1 cut(s)	72
Bbv12I	GWGCWC	1 cut(s)	73
BccI	CCATC	2 cut(s)	556, 861
BcoDI	GTCTC	1 cut(s)	297
BfaI	CTAG	3 cut(s)	573, 837, 855
BfmI	CTRYAG	1 cut(s)	87
BmeRI	GACNNNNNGTC	1 cut(s)	753
BmgBI	CACGTC	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	630
BmrI	ACTGGG	1 cut(s)	604
BmuI	ACTGGG	1 cut(s)	604
BsaAI	YACGTR	2 cut(s)	490, 685
BsaJI	CCNNGG	5 cut(s)	148, 171, 419, 658, 673
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse118I	RCCGGY	1 cut(s)	266
Bse1I	ACTGG	2 cut(s)	599, 737
Bse3DI	GCAATG	1 cut(s)	391
BseDI	CCNNGG	5 cut(s)	148, 171, 419, 658, 673
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseMI	GCAATG	1 cut(s)	391
BseNI	ACTGG	2 cut(s)	599, 737
BshFI	GGCC	2 cut(s)	632, 835
BsiHKAI	GWGCWC	1 cut(s)	73
BsiSI	CCGG	1 cut(s)	267
BslFI	GGGAC	1 cut(s)	135
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmAI	GTCTC	1 cut(s)	297
BsmFI	GGGAC	1 cut(s)	135
BsnI	GGCC	2 cut(s)	632, 835
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp143I	GATC	4 cut(s)	127, 218, 427, 829
Bsp19I	CCATGG	2 cut(s)	171, 673
BspACI	CCGC	2 cut(s)	264, 606
BspANI	GGCC	2 cut(s)	632, 835
BspPI	GGATC	2 cut(s)	226, 422
BsrDI	GCAATG	1 cut(s)	391
BsrFI	RCCGGY	1 cut(s)	266
BsrI	ACTGG	2 cut(s)	599, 737
BssAI	RCCGGY	1 cut(s)	266
BssECI	CCNNGG	5 cut(s)	148, 171, 419, 658, 673
BssMI	GATC	4 cut(s)	127, 218, 427, 829
BssSI	CACGAG	1 cut(s)	72
BssT1I	CCWWGG	5 cut(s)	148, 171, 419, 658, 673
Bst2BI	CACGAG	1 cut(s)	72
Bst4CI	ACNGT	1 cut(s)	587
BstBAI	YACGTR	2 cut(s)	490, 685
BstDEI	CTNAG	1 cut(s)	297
BstDSI	CCRYGG	2 cut(s)	171, 673
BstKTI	GATC	4 cut(s)	130, 221, 430, 832
BstMAI	GTCTC	1 cut(s)	297
BstMBI	GATC	4 cut(s)	127, 218, 427, 829
BstSFI	CTRYAG	1 cut(s)	87
BstXI	CCANNNNNNTGG	1 cut(s)	452
BsuRI	GGCC	2 cut(s)	632, 835
BtgI	CCRYGG	2 cut(s)	171, 673
BtrI	CACGTC	1 cut(s)	80
CaiI	CAGNNNCTG	1 cut(s)	191
Cfr10I	RCCGGY	1 cut(s)	266
Cfr13I	GGNCC	1 cut(s)	630
Csp6I	GTAC	2 cut(s)	730, 805
CspCI	CAANNNNNGTGG	2 cut(s)	514, 549
CviAII	CATG	5 cut(s)	117, 172, 559, 674, 808
CviQI	GTAC	2 cut(s)	730, 805
DdeI	CTNAG	1 cut(s)	297
DpnI	GATC	4 cut(s)	129, 220, 429, 831
DpnII	GATC	4 cut(s)	127, 218, 427, 829
DriI	GACNNNNNGTC	1 cut(s)	753
Eam1105I	GACNNNNNGTC	1 cut(s)	753
EciI	GGCGGA	1 cut(s)	253
Ecl136II	GAGCTC	1 cut(s)	71
Eco130I	CCWWGG	5 cut(s)	148, 171, 419, 658, 673
Eco24I	GRGCYC	1 cut(s)	73
Eco32I	GATATC	1 cut(s)	842
Eco53kI	GAGCTC	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	168
EcoICRI	GAGCTC	1 cut(s)	71
EcoRV	GATATC	1 cut(s)	842
EcoT14I	CCWWGG	5 cut(s)	148, 171, 419, 658, 673
EcoT38I	GRGCYC	1 cut(s)	73
ErhI	CCWWGG	5 cut(s)	148, 171, 419, 658, 673
FaeI	CATG	5 cut(s)	120, 175, 562, 677, 811
FaqI	GGGAC	1 cut(s)	135
FatI	CATG	5 cut(s)	116, 171, 558, 673, 807
FriOI	GRGCYC	1 cut(s)	73
FspBI	CTAG	3 cut(s)	573, 837, 855
HaeIII	GGCC	2 cut(s)	632, 835
HapII	CCGG	1 cut(s)	267
Hin1II	CATG	5 cut(s)	120, 175, 562, 677, 811
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HinfI	GANTC	7 cut(s)	200, 225, 240, 260, 457, 466, 871
HpaII	CCGG	1 cut(s)	267
HphI	GGTGA	1 cut(s)	599
Hpy166II	GTNNAC	6 cut(s)	54, 77, 103, 322, 493, 541
Hpy188I	TCNGA	4 cut(s)	477, 670, 696, 829
Hpy188III	TCNNGA	4 cut(s)	46, 136, 222, 517
Hpy8I	GTNNAC	6 cut(s)	54, 77, 103, 322, 493, 541
HpyAV	CCTTC	1 cut(s)	772
HpyCH4III	ACNGT	1 cut(s)	587
HpyCH4IV	ACGT	4 cut(s)	79, 489, 684, 711
HpyCH4V	TGCA	3 cut(s)	65, 562, 767
HpyF3I	CTNAG	1 cut(s)	297
HpySE526I	ACGT	4 cut(s)	79, 489, 684, 711
Hsp92II	CATG	5 cut(s)	120, 175, 562, 677, 811
Kzo9I	GATC	4 cut(s)	127, 218, 427, 829
LmnI	GCTCC	2 cut(s)	83, 643
LpnPI	CCDG	7 cut(s)	171, 177, 207, 280, 580, 718, 858
MaeI	CTAG	3 cut(s)	573, 837, 855
MaeII	ACGT	4 cut(s)	79, 489, 684, 711
MaeIII	GTNAC	3 cut(s)	112, 274, 680
MalI	GATC	4 cut(s)	129, 220, 429, 831
MboI	GATC	4 cut(s)	127, 218, 427, 829
MboII	GAAGA	2 cut(s)	174, 220
MhlI	GDGCHC	1 cut(s)	73
MluCI	AATT	4 cut(s)	26, 245, 363, 625
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	693
MnlI	CCTC	4 cut(s)	261, 310, 389, 861
MseI	TTAA	2 cut(s)	645, 761
MslI	CAYNNNNRTG	2 cut(s)	450, 687
MspI	CCGG	1 cut(s)	267
NcoI	CCATGG	2 cut(s)	171, 673
NdeII	GATC	4 cut(s)	127, 218, 427, 829
NlaIII	CATG	5 cut(s)	120, 175, 562, 677, 811
NmuCI	GTSAC	2 cut(s)	274, 680
PfeI	GAWTC	6 cut(s)	225, 240, 260, 457, 466, 871
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
Ppu21I	YACGTR	2 cut(s)	490, 685
Psp124BI	GAGCTC	1 cut(s)	73
Psp1406I	AACGTT	1 cut(s)	711
PspPI	GGNCC	1 cut(s)	630
PstNI	CAGNNNCTG	1 cut(s)	191
RsaI	GTAC	2 cut(s)	731, 806
RsaNI	GTAC	2 cut(s)	730, 805
RseI	CAYNNNNRTG	2 cut(s)	450, 687
SacI	GAGCTC	1 cut(s)	73
SaqAI	TTAA	2 cut(s)	645, 761
Sau3AI	GATC	4 cut(s)	127, 218, 427, 829
Sau96I	GGNCC	1 cut(s)	630
SchI	GAGTC	1 cut(s)	209
SduI	GDGCHC	1 cut(s)	73
SfcI	CTRYAG	1 cut(s)	87
SgrAI	CRCCGGYG	1 cut(s)	266
SmiMI	CAYNNNNRTG	2 cut(s)	450, 687
Sse9I	AATT	4 cut(s)	26, 245, 363, 625
SsiI	CCGC	2 cut(s)	264, 606
SspMI	CTAG	3 cut(s)	573, 837, 855
SstI	GAGCTC	1 cut(s)	73
StyI	CCWWGG	5 cut(s)	148, 171, 419, 658, 673
TaaI	ACNGT	1 cut(s)	587
TaiI	ACGT	4 cut(s)	82, 492, 687, 714
TaqI	TCGA	4 cut(s)	96, 426, 722, 865
TasI	AATT	4 cut(s)	26, 245, 363, 625
TatI	WGTACW	1 cut(s)	804
TfiI	GAWTC	6 cut(s)	225, 240, 260, 457, 466, 871
Tru1I	TTAA	2 cut(s)	645, 761
Tru9I	TTAA	2 cut(s)	645, 761
TseFI	GTSAC	2 cut(s)	274, 680
Tsp45I	GTSAC	2 cut(s)	274, 680
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	231, 459
XcmI	CCANNNNNNNNNTGG	1 cut(s)	565
XspI	CTAG	3 cut(s)	573, 837, 855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.