Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001964

Physical Location & Seq

Genomic Coordinates Reverse (-)

46419645 .. 46425950

Gene Structure 6306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G023770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGATGCGGCTTTCTTTGATCTTCTTTCTAGTACTTGTTGTAATGAAACATACAAGTGAAGCCGCTGATAATGTTAGCTTTGATGAAACCTACGTCGTTCGATGCGGAAATGATGATATCTCGAAGCTAGACCAAGGAAGAGAAAACCCGACATGCATGCTAGGATCGGGGTTTAATTCCAAGTATGGCTATGGTTCGGGATTCTTTGAAATGAAAATAAAGTTGGCGGCGAGACATTCTCCAGGAGTTGTCGCCACATTTTATCTAAGTTCACATCCAGATAGTAAGCCTGGAAATCATGATGAGCTAGACTTTGAGTTCTTGGGCACAGATGGACCTGTATACACTTTACAAACAAATATTTTCGCAAATGACAATGGGAATAGAGAGCAAAGACTTCATATTAATTTTTATGTCGACGATAAACCAATTAGGGTTTACAAGAACAATGAAAATATTAGGGTTCCCTACCCATCACGGCCAATGATAATAGACGCAAGCATATGGGATGGATCAAATTGGGCAACTGATGGAGGCCAAACAAAGATCGACTGGAACCATGCACCATTTAGAGCTTACTTCCAAGGGTTTGACATAAGTTCTGGCTGTACACTAGATAAGTCCAGGACCGATGTTAAGGAATGTTATGCATCCACATACTTGTGGAACCATCAGGAGTATTGGCAACTAAACTCAACCGAACAACAAGCATATGAGAAGGTGAGAAAGGAACAGATGAACTATGACTACTGTACTGATTCAACAAGGTTCCCTACACCTCCCCCAGAGTGCAGTAGTAATACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

268

Amino Acids

30.73

Weight (kDa)

5.26

Isoelectric Point (pI)

38.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	54 - 134	1.1e-17	Glycosyl hydrolases family 16
Glyco_hydro_16	PF00722	134 - 186	1.8e-15	Glycosyl hydrolases family 16
XET_C	PF06955	219 - 264	2.1e-15	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25050 AT4G13080 AT4G13090
fragaria_vesca	FvH4_2g18760 FvH4_2g18761 FvH4_3g26030 FvH4_3g26030
malus_domestica	MD03G1093100.v1.1 MD05G1173300.v1.1 MD05G1173400.v1.1 MD05G1173600.v1.1
prunus_persica	Prupe.8G200900_v2.0.a1 Prupe.8G200900_v2.0.a1 Prupe.8G200900_v2.0.a1 Prupe.8G201000_v2.0.a1
pyrus_communis	pycom05g16020 pycom05g16030 pycom05g16040
rosa_chinensis	RchiOBHm_Chr5g0047321 RchiOBHm_Chr6g0284451 RchiOBHm_Chr6g0284461 RchiOBHm_Chr6g0284491
rosa_laevigata	RLG00000012742 RLG00000012743
rosa_roxburghii	Rroxscaffold_1G00034030 Rroxscaffold_7G00184670 Rroxscaffold_7G00184680 Rroxscaffold_7G00184690
rosa_rugosa	Rorug05G0235900 Rorug06G0163800
rosa_samantha	Rh5BG323400 Rh5CG350600 Rh5DG334400 Rh6AG276600 Rh6AG276900 Rh6BG276600 Rh6BG276700 Rh6CG278600 Rh6CG278700 Rh6CG278900 Rh6DG271000 Rh6DG271100 Rh6DG271300
rosa_wichuraiana	Rw6G023760 Rw6G023770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	342, 417
AciI	CCGC	4 cut(s)	7, 63, 105, 227
AclWI	GGATC	2 cut(s)	172, 520
AcoI	YGGCCR	1 cut(s)	479
AfaI	GTAC	3 cut(s)	33, 610, 754
AgsI	TTSAA	2 cut(s)	209, 762
AjnI	CCWGG	3 cut(s)	241, 289, 623
AjuI	GAANNNNNNNTTGG	2 cut(s)	206, 238
AluBI	AGCT	4 cut(s)	78, 127, 307, 575
AluI	AGCT	4 cut(s)	78, 127, 307, 575
Alw26I	GTCTC	1 cut(s)	226
AlwI	GGATC	2 cut(s)	172, 520
AoxI	GGCC	2 cut(s)	479, 535
AseI	ATTAAT	1 cut(s)	405
AspS9I	GGNCC	2 cut(s)	335, 627
AsuHPI	GGTGA	1 cut(s)	733
AvaII	GGWCC	2 cut(s)	335, 627
BaeGI	GKGCMC	1 cut(s)	329
BccI	CCATC	5 cut(s)	326, 481, 503, 524, 678
BceAI	ACGGC	1 cut(s)	494
BcgI	CGANNNNNNTGC	2 cut(s)	139, 173
BciT130I	CCWGG	3 cut(s)	243, 291, 625
BcoDI	GTCTC	1 cut(s)	226
BfaI	CTAG	5 cut(s)	29, 128, 161, 308, 614
BisI	GCNGC	3 cut(s)	8, 63, 228
BlsI	GCNGC	3 cut(s)	9, 64, 229
BmcAI	AGTACT	1 cut(s)	33
Bme1390I	CCNGG	3 cut(s)	243, 291, 625
Bme18I	GGWCC	2 cut(s)	335, 627
BmgT120I	GGNCC	2 cut(s)	335, 627
BmiI	GGNNCC	4 cut(s)	465, 557, 668, 770
BmrFI	CCNGG	3 cut(s)	243, 291, 625
BmsI	GCATC	2 cut(s)	92, 659
BplI	GAGNNNNNCTC	2 cut(s)	223, 255
BpmI	CTGGAG	1 cut(s)	225
BsaJI	CCNNGG	2 cut(s)	133, 583
Bse1I	ACTGG	1 cut(s)	557
BseBI	CCWGG	3 cut(s)	243, 291, 625
BseDI	CCNNGG	2 cut(s)	133, 583
BseGI	GGATG	3 cut(s)	274, 514, 650
BseNI	ACTGG	1 cut(s)	557
BseSI	GKGCMC	1 cut(s)	329
BshFI	GGCC	2 cut(s)	481, 537
BsmAI	GTCTC	1 cut(s)	226
BsnI	GGCC	2 cut(s)	481, 537
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp1407I	TGTACA	1 cut(s)	608
Bsp143I	GATC	4 cut(s)	18, 164, 512, 546
BspACI	CCGC	4 cut(s)	7, 63, 105, 227
BspANI	GGCC	2 cut(s)	481, 537
BspHI	TCATGA	1 cut(s)	298
BspLI	GGNNCC	4 cut(s)	465, 557, 668, 770
BspPI	GGATC	2 cut(s)	172, 520
BsrGI	TGTACA	1 cut(s)	608
BsrI	ACTGG	1 cut(s)	557
BssECI	CCNNGG	2 cut(s)	133, 583
BssMI	GATC	4 cut(s)	18, 164, 512, 546
BssNAI	GTATAC	1 cut(s)	343
BssT1I	CCWWGG	2 cut(s)	133, 583
Bst1107I	GTATAC	1 cut(s)	343
Bst2UI	CCWGG	3 cut(s)	243, 291, 625
Bst4CI	ACNGT	1 cut(s)	752
Bst6I	CTCTTC	1 cut(s)	133
BstAUI	TGTACA	1 cut(s)	608
BstC8I	GCNNGC	2 cut(s)	158, 499
BstDEI	CTNAG	1 cut(s)	266
BstF5I	GGATG	3 cut(s)	274, 514, 650
BstKTI	GATC	4 cut(s)	21, 167, 515, 549
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	4 cut(s)	18, 164, 512, 546
BstNI	CCWGG	3 cut(s)	243, 291, 625
BstNSI	RCATGY	2 cut(s)	156, 160
BstSCI	CCNGG	3 cut(s)	241, 289, 623
BstSLI	GKGCMC	1 cut(s)	329
BstZ17I	GTATAC	1 cut(s)	343
BsuRI	GGCC	2 cut(s)	481, 537
BtsCI	GGATG	3 cut(s)	274, 514, 650
Cac8I	GCNNGC	2 cut(s)	158, 499
CciI	TCATGA	1 cut(s)	298
Cfr13I	GGNCC	2 cut(s)	335, 627
CseI	GACGC	1 cut(s)	503
Csp6I	GTAC	3 cut(s)	32, 609, 753
CviAII	CATG	4 cut(s)	153, 157, 299, 560
CviQI	GTAC	3 cut(s)	32, 609, 753
DdeI	CTNAG	1 cut(s)	266
DpnI	GATC	4 cut(s)	20, 166, 514, 548
DpnII	GATC	4 cut(s)	18, 164, 512, 546
EaeI	YGGCCR	1 cut(s)	479
Eam1104I	CTCTTC	1 cut(s)	133
EarI	CTCTTC	1 cut(s)	133
Eco130I	CCWWGG	2 cut(s)	133, 583
Eco32I	GATATC	1 cut(s)	118
Eco47I	GGWCC	2 cut(s)	335, 627
EcoRII	CCWGG	3 cut(s)	241, 289, 623
EcoRV	GATATC	1 cut(s)	118
EcoT14I	CCWWGG	2 cut(s)	133, 583
EcoT22I	ATGCAT	2 cut(s)	158, 652
ErhI	CCWWGG	2 cut(s)	133, 583
FaeI	CATG	4 cut(s)	156, 160, 302, 563
FatI	CATG	4 cut(s)	152, 156, 298, 559
FauNDI	CATATG	2 cut(s)	503, 712
FblI	GTMKAC	2 cut(s)	342, 417
Fnu4HI	GCNGC	3 cut(s)	8, 63, 228
FokI	GGATG	3 cut(s)	261, 521, 637
Fsp4HI	GCNGC	3 cut(s)	8, 63, 228
FspBI	CTAG	5 cut(s)	29, 128, 161, 308, 614
GluI	GCNGC	3 cut(s)	8, 63, 228
GsuI	CTGGAG	1 cut(s)	225
HaeIII	GGCC	2 cut(s)	481, 537
HgaI	GACGC	1 cut(s)	503
Hin1II	CATG	4 cut(s)	156, 160, 302, 563
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HinfI	GANTC	2 cut(s)	201, 758
HphI	GGTGA	1 cut(s)	733
Hpy166II	GTNNAC	5 cut(s)	272, 343, 418, 439, 611
Hpy188III	TCNNGA	5 cut(s)	121, 198, 278, 299, 674
Hpy8I	GTNNAC	5 cut(s)	272, 343, 418, 439, 611
Hpy99I	CGWCG	2 cut(s)	98, 422
HpyAV	CCTTC	1 cut(s)	712
HpyCH4III	ACNGT	1 cut(s)	752
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	4 cut(s)	156, 563, 650, 792
HpyF3I	CTNAG	1 cut(s)	266
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	4 cut(s)	156, 160, 302, 563
Kzo9I	GATC	4 cut(s)	18, 164, 512, 546
LweI	GCATC	2 cut(s)	92, 659
MaeI	CTAG	5 cut(s)	29, 128, 161, 308, 614
MaeII	ACGT	1 cut(s)	93
MalI	GATC	4 cut(s)	20, 166, 514, 548
MboI	GATC	4 cut(s)	18, 164, 512, 546
MboII	GAAGA	2 cut(s)	13, 150
MhlI	GDGCHC	1 cut(s)	329
MluCI	AATT	4 cut(s)	175, 406, 429, 517
MnlI	CCTC	2 cut(s)	527, 789
Mph1103I	ATGCAT	2 cut(s)	158, 652
MseI	TTAA	3 cut(s)	174, 405, 636
MslI	CAYNNNNRTG	2 cut(s)	54, 661
MspA1I	CMGCKG	1 cut(s)	65
MspR9I	CCNGG	3 cut(s)	243, 291, 625
MvaI	CCWGG	3 cut(s)	243, 291, 625
NdeI	CATATG	2 cut(s)	503, 712
NdeII	GATC	4 cut(s)	18, 164, 512, 546
NlaIII	CATG	4 cut(s)	156, 160, 302, 563
NlaIV	GGNNCC	4 cut(s)	465, 557, 668, 770
NsiI	ATGCAT	2 cut(s)	158, 652
NspI	RCATGY	2 cut(s)	156, 160
PaeI	GCATGC	1 cut(s)	160
PagI	TCATGA	1 cut(s)	298
PfeI	GAWTC	2 cut(s)	201, 758
PfoI	TCCNGGA	2 cut(s)	241, 623
PkrI	GCNGC	3 cut(s)	9, 64, 229
PshBI	ATTAAT	1 cut(s)	405
Psp6I	CCWGG	3 cut(s)	241, 289, 623
PspGI	CCWGG	3 cut(s)	241, 289, 623
PspN4I	GGNNCC	4 cut(s)	465, 557, 668, 770
PspPI	GGNCC	2 cut(s)	335, 627
PsrI	GAACNNNNNNTAC	2 cut(s)	731, 763
RsaI	GTAC	3 cut(s)	33, 610, 754
RsaNI	GTAC	3 cut(s)	32, 609, 753
RseI	CAYNNNNRTG	2 cut(s)	54, 661
SalI	GTCGAC	1 cut(s)	416
SaqAI	TTAA	3 cut(s)	174, 405, 636
SatI	GCNGC	3 cut(s)	8, 63, 228
Sau3AI	GATC	4 cut(s)	18, 164, 512, 546
Sau96I	GGNCC	2 cut(s)	335, 627
ScaI	AGTACT	1 cut(s)	33
ScrFI	CCNGG	3 cut(s)	243, 291, 625
SduI	GDGCHC	1 cut(s)	329
SfaNI	GCATC	2 cut(s)	92, 659
SinI	GGWCC	2 cut(s)	335, 627
SmiMI	CAYNNNNRTG	2 cut(s)	54, 661
SphI	GCATGC	1 cut(s)	160
Sse9I	AATT	4 cut(s)	175, 406, 429, 517
SsiI	CCGC	4 cut(s)	7, 63, 105, 227
SspI	AATATT	2 cut(s)	361, 457
SspMI	CTAG	5 cut(s)	29, 128, 161, 308, 614
StyD4I	CCNGG	3 cut(s)	241, 289, 623
StyI	CCWWGG	2 cut(s)	133, 583
TaaI	ACNGT	1 cut(s)	752
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	4 cut(s)	100, 122, 417, 549
TaqII	GACCGA	1 cut(s)	644
TasI	AATT	4 cut(s)	175, 406, 429, 517
TatI	WGTACW	3 cut(s)	31, 608, 752
TauI	GCSGC	3 cut(s)	10, 65, 230
TfiI	GAWTC	2 cut(s)	201, 758
Tru1I	TTAA	3 cut(s)	174, 405, 636
Tru9I	TTAA	3 cut(s)	174, 405, 636
TspDTI	ATGAA	6 cut(s)	59, 99, 227, 389, 465, 752
VpaK11BI	GGWCC	2 cut(s)	335, 627
VspI	ATTAAT	1 cut(s)	405
XceI	RCATGY	2 cut(s)	156, 160
XmiI	GTMKAC	2 cut(s)	342, 417
XspI	CTAG	5 cut(s)	29, 128, 161, 308, 614
ZrmI	AGTACT	1 cut(s)	33
Zsp2I	ATGCAT	2 cut(s)	158, 652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.