Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001964

Physical Location & Seq

Genomic Coordinates Reverse (-)

23303836 .. 23304644

Gene Structure 809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0163800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGAACCACAACAACAGCAACCAACAGAGGAGGGAGGAAACACCCAAGCAGCTGGAAGTAGTGCCAACATGGATTTCTGGCGAAGCCGTACCAGATGGATTCCTACTCCAGAACAAATAAGAATCCTCAAGGATCTTTACTACGTCAAGGGATTTAAGTGCCCATCTACAGAGCACATTCACGAGATCTGCCTCCAGCTGAACCAGTATGGACATGTTGAGGGTAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAATAAGTGTAATCAGGCTGCTCCAGTGCCCATGGGAACTAGTTCTCTTAGTACTGGTGGATCCATCGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTCAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCTGAAGGCTACTTCCGAGGAAGGTAGCGCTTTTGGTTACTATTCTGGTGGCTCAGGCGGTTACCACAGTGGCTCAAACGTTTCTCTTGAGCTCAGCCTCAATCCATCCGGAGCTGCTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009832 GO:0009987 GO:0010228 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0022414 GO:0030243 GO:0032501 GO:0032502 GO:0042546 GO:0043170 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0046527 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051273 GO:0061458 GO:0071554 GO:0071669 GO:0071704 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

198

Amino Acids

21.47

Weight (kDa)

5.66

Isoelectric Point (pI)

49.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	30 - 91	1.1e-09	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25050 AT4G13080 AT4G13090
fragaria_vesca	FvH4_2g18760 FvH4_2g18761 FvH4_3g26030 FvH4_3g26030
malus_domestica	MD03G1093100.v1.1 MD05G1173300.v1.1 MD05G1173400.v1.1 MD05G1173600.v1.1
prunus_persica	Prupe.8G200900_v2.0.a1 Prupe.8G200900_v2.0.a1 Prupe.8G200900_v2.0.a1 Prupe.8G201000_v2.0.a1
pyrus_communis	pycom05g16020 pycom05g16030 pycom05g16040
rosa_chinensis	RchiOBHm_Chr5g0047321 RchiOBHm_Chr6g0284451 RchiOBHm_Chr6g0284461 RchiOBHm_Chr6g0284491
rosa_laevigata	RLG00000012742 RLG00000012743
rosa_roxburghii	Rroxscaffold_1G00034030 Rroxscaffold_7G00184670 Rroxscaffold_7G00184680 Rroxscaffold_7G00184690
rosa_rugosa	Rorug05G0235900 Rorug06G0163800
rosa_samantha	Rh5BG323400 Rh5CG350600 Rh5DG334400 Rh6AG276600 Rh6AG276900 Rh6BG276600 Rh6BG276700 Rh6CG278600 Rh6CG278700 Rh6CG278900 Rh6DG271000 Rh6DG271100 Rh6DG271300
rosa_wichuraiana	Rw6G023760 Rw6G023770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	465
AccIII	TCCGGA	1 cut(s)	581
AciI	CCGC	1 cut(s)	531
AclI	AACGTT	1 cut(s)	552
AclWI	GGATC	3 cut(s)	141, 330, 343
AcuI	CTGAAG	1 cut(s)	497
AcyI	GRCGYC	1 cut(s)	462
AfaI	GTAC	2 cut(s)	91, 328
AfeI	AGCGCT	1 cut(s)	502
AfiI	CCNNNNNNNGG	1 cut(s)	452
AflIII	ACRYGT	1 cut(s)	214
AgsI	TTSAA	1 cut(s)	428
AhlI	ACTAGT	1 cut(s)	314
AjnI	CCWGG	1 cut(s)	417
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AluBI	AGCT	4 cut(s)	53, 199, 565, 587
AluI	AGCT	4 cut(s)	53, 199, 565, 587
Alw21I	GWGCWC	3 cut(s)	177, 453, 567
Alw44I	GTGCAC	1 cut(s)	449
AlwI	GGATC	3 cut(s)	141, 330, 343
Ama87I	CYCGRG	1 cut(s)	261
Aor13HI	TCCGGA	1 cut(s)	581
Aor51HI	AGCGCT	1 cut(s)	502
ApaLI	GTGCAC	1 cut(s)	449
ApeKI	GCWGC	3 cut(s)	50, 293, 587
Asp700I	GAANNNNTTC	1 cut(s)	316
AspLEI	GCGC	1 cut(s)	503
AspS9I	GGNCC	1 cut(s)	357
AsuHPI	GGTGA	1 cut(s)	407
AvaI	CYCGRG	1 cut(s)	261
AvaII	GGWCC	1 cut(s)	357
BaeGI	GKGCMC	3 cut(s)	164, 306, 453
BamHI	GGATCC	1 cut(s)	335
BanII	GRGCYC	2 cut(s)	262, 567
BauI	CACGAG	1 cut(s)	182
Bbv12I	GWGCWC	3 cut(s)	177, 453, 567
BbvI	GCAGC	3 cut(s)	62, 280, 574
BccI	CCATC	4 cut(s)	90, 172, 347, 586
BceAI	ACGGC	2 cut(s)	72, 469
BciT130I	CCWGG	1 cut(s)	419
BcuI	ACTAGT	1 cut(s)	314
BfaI	CTAG	2 cut(s)	315, 595
BfmI	CTRYAG	1 cut(s)	168
BfoI	RGCGCY	1 cut(s)	504
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	3 cut(s)	51, 294, 588
BlpI	GCTNAGC	1 cut(s)	566
BlsI	GCNGC	3 cut(s)	52, 295, 589
BmcAI	AGTACT	1 cut(s)	328
Bme1390I	CCNGG	1 cut(s)	419
Bme18I	GGWCC	1 cut(s)	357
BmeT110I	CYCGRG	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	357
BmiI	GGNNCC	4 cut(s)	6, 245, 337, 358
BmrFI	CCNGG	1 cut(s)	419
BpmI	CTGGAG	4 cut(s)	93, 179, 282, 399
Bpu10I	CCTNAGC	1 cut(s)	526
Bpu1102I	GCTNAGC	1 cut(s)	566
BpuEI	CTTGAG	2 cut(s)	113, 581
Bsa29I	ATCGAT	1 cut(s)	342
BsaHI	GRCGYC	1 cut(s)	462
BsaJI	CCNNGG	2 cut(s)	306, 489
BsaWI	WCCGGW	1 cut(s)	581
Bsc4I	CCNNNNNNNGG	1 cut(s)	452
Bse1I	ACTGG	5 cut(s)	205, 299, 334, 367, 376
BseAI	TCCGGA	1 cut(s)	581
BseBI	CCWGG	1 cut(s)	419
BseCI	ATCGAT	1 cut(s)	342
BseDI	CCNNGG	2 cut(s)	306, 489
BseGI	GGATG	2 cut(s)	389, 578
BseLI	CCNNNNNNNGG	1 cut(s)	452
BseMII	CTCAG	2 cut(s)	540, 580
BseNI	ACTGG	5 cut(s)	205, 299, 334, 367, 376
BseRI	GAGGAG	3 cut(s)	44, 420, 423
BseSI	GKGCMC	3 cut(s)	164, 306, 453
BseXI	GCAGC	3 cut(s)	62, 280, 574
BshVI	ATCGAT	1 cut(s)	342
BsiHKAI	GWGCWC	3 cut(s)	177, 453, 567
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	582
BslI	CCNNNNNNNGG	1 cut(s)	452
BsoBI	CYCGRG	1 cut(s)	261
Bsp1286I	GDGCHC	6 cut(s)	164, 177, 262, 306, 453, 567
Bsp13I	TCCGGA	1 cut(s)	581
Bsp143I	GATC	5 cut(s)	133, 186, 335, 343, 412
Bsp1720I	GCTNAGC	1 cut(s)	566
Bsp19I	CCATGG	1 cut(s)	306
BspACI	CCGC	1 cut(s)	531
BspCNI	CTCAG	2 cut(s)	539, 579
BspDI	ATCGAT	1 cut(s)	342
BspEI	TCCGGA	1 cut(s)	581
BspLI	GGNNCC	4 cut(s)	6, 245, 337, 358
BspPI	GGATC	3 cut(s)	141, 330, 343
BsrI	ACTGG	5 cut(s)	205, 299, 334, 367, 376
BssECI	CCNNGG	2 cut(s)	306, 489
BssMI	GATC	5 cut(s)	133, 186, 335, 343, 412
BssNI	GRCGYC	1 cut(s)	462
BssSI	CACGAG	1 cut(s)	182
BssT1I	CCWWGG	1 cut(s)	306
Bst2BI	CACGAG	1 cut(s)	182
Bst2UI	CCWGG	1 cut(s)	419
Bst4CI	ACNGT	1 cut(s)	542
Bst6I	CTCTTC	1 cut(s)	438
BstACI	GRCGYC	1 cut(s)	462
BstDEI	CTNAG	3 cut(s)	323, 526, 566
BstDSI	CCRYGG	1 cut(s)	306
BstEII	GGTNACC	2 cut(s)	470, 533
BstF5I	GGATG	2 cut(s)	389, 578
BstH2I	RGCGCY	1 cut(s)	504
BstHHI	GCGC	1 cut(s)	503
BstKTI	GATC	5 cut(s)	136, 189, 338, 346, 415
BstMBI	GATC	5 cut(s)	133, 186, 335, 343, 412
BstNI	CCWGG	1 cut(s)	419
BstNSI	RCATGY	1 cut(s)	218
BstPI	GGTNACC	2 cut(s)	470, 533
BstSCI	CCNGG	1 cut(s)	417
BstSFI	CTRYAG	1 cut(s)	168
BstSLI	GKGCMC	3 cut(s)	164, 306, 453
BstV1I	GCAGC	3 cut(s)	62, 280, 574
BstX2I	RGATCY	3 cut(s)	133, 186, 335
BstXI	CCANNNNNNTGG	1 cut(s)	53
BstYI	RGATCY	3 cut(s)	133, 186, 335
Bsu15I	ATCGAT	1 cut(s)	342
BsuTUI	ATCGAT	1 cut(s)	342
BtgI	CCRYGG	1 cut(s)	306
BtsCI	GGATG	2 cut(s)	389, 578
BtsIMutI	CAGTG	3 cut(s)	306, 360, 547
CfoI	GCGC	1 cut(s)	503
Cfr13I	GGNCC	1 cut(s)	357
ClaI	ATCGAT	1 cut(s)	342
Csp6I	GTAC	2 cut(s)	90, 327
CviAII	CATG	3 cut(s)	70, 215, 307
CviQI	GTAC	2 cut(s)	90, 327
DdeI	CTNAG	3 cut(s)	323, 526, 566
DpnI	GATC	5 cut(s)	135, 188, 337, 345, 414
DpnII	GATC	5 cut(s)	133, 186, 335, 343, 412
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
Ecl136II	GAGCTC	1 cut(s)	565
Eco130I	CCWWGG	1 cut(s)	306
Eco24I	GRGCYC	2 cut(s)	262, 567
Eco47I	GGWCC	1 cut(s)	357
Eco47III	AGCGCT	1 cut(s)	502
Eco53kI	GAGCTC	1 cut(s)	565
Eco57I	CTGAAG	1 cut(s)	497
Eco88I	CYCGRG	1 cut(s)	261
Eco91I	GGTNACC	2 cut(s)	470, 533
EcoICRI	GAGCTC	1 cut(s)	565
EcoO65I	GGTNACC	2 cut(s)	470, 533
EcoRII	CCWGG	1 cut(s)	417
EcoT14I	CCWWGG	1 cut(s)	306
EcoT38I	GRGCYC	2 cut(s)	262, 567
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	3 cut(s)	73, 218, 310
FaiI	YATR	4 cut(s)	71, 210, 216, 308
FatI	CATG	3 cut(s)	69, 214, 306
Fnu4HI	GCNGC	3 cut(s)	51, 294, 588
FokI	GGATG	2 cut(s)	376, 565
FriOI	GRGCYC	2 cut(s)	262, 567
Fsp4HI	GCNGC	3 cut(s)	51, 294, 588
FspBI	CTAG	2 cut(s)	315, 595
GlaI	GCGC	1 cut(s)	502
GluI	GCNGC	3 cut(s)	51, 294, 588
GsuI	CTGGAG	4 cut(s)	93, 179, 282, 399
HaeII	RGCGCY	1 cut(s)	504
HapII	CCGG	1 cut(s)	582
HhaI	GCGC	1 cut(s)	503
Hin1I	GRCGYC	1 cut(s)	462
Hin1II	CATG	3 cut(s)	73, 218, 310
Hin6I	GCGC	1 cut(s)	501
HinP1I	GCGC	1 cut(s)	501
HinfI	GANTC	2 cut(s)	100, 123
HpaII	CCGG	1 cut(s)	582
HphI	GGTGA	1 cut(s)	407
Hpy166II	GTNNAC	2 cut(s)	360, 451
Hpy188I	TCNGA	1 cut(s)	490
Hpy188III	TCNNGA	6 cut(s)	110, 182, 247, 263, 560, 582
Hpy8I	GTNNAC	2 cut(s)	360, 451
HpyAV	CCTTC	2 cut(s)	472, 488
HpyCH4III	ACNGT	1 cut(s)	542
HpyCH4IV	ACGT	4 cut(s)	144, 252, 462, 552
HpyCH4V	TGCA	2 cut(s)	397, 451
HpyF3I	CTNAG	3 cut(s)	323, 526, 566
HpySE526I	ACGT	4 cut(s)	144, 252, 462, 552
Hsp92I	GRCGYC	1 cut(s)	462
Hsp92II	CATG	3 cut(s)	73, 218, 310
HspAI	GCGC	1 cut(s)	501
Kpn2I	TCCGGA	1 cut(s)	581
Kzo9I	GATC	5 cut(s)	133, 186, 335, 343, 412
LmnI	GCTCC	2 cut(s)	301, 584
Lsp1109I	GCAGC	3 cut(s)	62, 280, 574
MaeI	CTAG	2 cut(s)	315, 595
MaeII	ACGT	4 cut(s)	144, 252, 462, 552
MaeIII	GTNAC	3 cut(s)	470, 509, 533
MalI	GATC	5 cut(s)	135, 188, 337, 345, 414
MboI	GATC	5 cut(s)	133, 186, 335, 343, 412
MboII	GAAGA	1 cut(s)	425
MflI	RGATCY	3 cut(s)	133, 186, 335
MhlI	GDGCHC	6 cut(s)	164, 177, 262, 306, 453, 567
MluCI	AATT	1 cut(s)	349
MroI	TCCGGA	1 cut(s)	581
MroXI	GAANNNNTTC	1 cut(s)	316
MseI	TTAA	1 cut(s)	156
MspA1I	CMGCKG	2 cut(s)	53, 199
MspI	CCGG	1 cut(s)	582
MspR9I	CCNGG	1 cut(s)	419
MvaI	CCWGG	1 cut(s)	419
NcoI	CCATGG	1 cut(s)	306
NdeII	GATC	5 cut(s)	133, 186, 335, 343, 412
NlaIII	CATG	3 cut(s)	73, 218, 310
NlaIV	GGNNCC	4 cut(s)	6, 245, 337, 358
NspI	RCATGY	1 cut(s)	218
PaeR7I	CTCGAG	1 cut(s)	261
PciI	ACATGT	1 cut(s)	214
PcsI	WCGNNNNNNNCGW	1 cut(s)	459
PdmI	GAANNNNTTC	1 cut(s)	316
PfeI	GAWTC	2 cut(s)	100, 123
PkrI	GCNGC	3 cut(s)	52, 295, 589
PscI	ACATGT	1 cut(s)	214
Psp124BI	GAGCTC	1 cut(s)	567
Psp1406I	AACGTT	1 cut(s)	552
Psp6I	CCWGG	1 cut(s)	417
PspEI	GGTNACC	2 cut(s)	470, 533
PspGI	CCWGG	1 cut(s)	417
PspN4I	GGNNCC	4 cut(s)	6, 245, 337, 358
PspPI	GGNCC	1 cut(s)	357
PsuI	RGATCY	3 cut(s)	133, 186, 335
PvuII	CAGCTG	2 cut(s)	53, 199
RsaI	GTAC	2 cut(s)	91, 328
RsaNI	GTAC	2 cut(s)	90, 327
SacI	GAGCTC	1 cut(s)	567
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	3 cut(s)	51, 294, 588
Sau3AI	GATC	5 cut(s)	133, 186, 335, 343, 412
Sau96I	GGNCC	1 cut(s)	357
ScaI	AGTACT	1 cut(s)	328
ScrFI	CCNGG	1 cut(s)	419
SduI	GDGCHC	6 cut(s)	164, 177, 262, 306, 453, 567
SfcI	CTRYAG	1 cut(s)	168
Sfr274I	CTCGAG	1 cut(s)	261
SinI	GGWCC	1 cut(s)	357
SlaI	CTCGAG	1 cut(s)	261
SmlI	CTYRAG	3 cut(s)	128, 261, 560
SmoI	CTYRAG	3 cut(s)	128, 261, 560
SpeI	ACTAGT	1 cut(s)	314
Sse9I	AATT	1 cut(s)	349
SsiI	CCGC	1 cut(s)	531
SspMI	CTAG	2 cut(s)	315, 595
SstI	GAGCTC	1 cut(s)	567
StyD4I	CCNGG	1 cut(s)	417
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	1 cut(s)	542
TaiI	ACGT	4 cut(s)	147, 255, 465, 555
TaqI	TCGA	2 cut(s)	262, 342
TasI	AATT	1 cut(s)	349
TatI	WGTACW	1 cut(s)	326
TfiI	GAWTC	2 cut(s)	100, 123
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	3 cut(s)	306, 367, 547
TseI	GCWGC	3 cut(s)	50, 293, 587
TspDTI	ATGAA	1 cut(s)	290
TspRI	CASTG	3 cut(s)	306, 367, 547
VneI	GTGCAC	1 cut(s)	449
VpaK11BI	GGWCC	1 cut(s)	357
XceI	RCATGY	1 cut(s)	218
XhoI	CTCGAG	1 cut(s)	261
XmnI	GAANNNNTTC	1 cut(s)	316
XspI	CTAG	2 cut(s)	315, 595
ZraI	GACGTC	1 cut(s)	463
ZrmI	AGTACT	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.