Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001304

Physical Location & Seq

Genomic Coordinates Reverse (-)

18403002 .. 18404987

Gene Structure 1986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G49645.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGAAACGAGAATAGAACTGAAGAAGAAAATTTCCGAGATTTTCAAAGACTTTATGACAGTAATCACGCAGCTTGAAGAACTAGGGAATGCTGCAAACAACTTTCTTCTACGGTTTCAGCAAGGACTAAGTTTTCTTCAACGCCCTCCAATAGTTACTTCGTCCAAGTTGATTGAGAACATTATCAAGAAGAATGAAACAAGGCGGCTTAAATCATATATCGAGGCAGGATGTATTAATATCCATGATGCTGCACAAAGCACAAGAGCTTTGCATACATCTCTATCAGGACTTTCTGACCACCTAATCAAAGCCAAAAACTTGTTGATTGAGCTGGAACGTCTCACTGATGAGGCCGCCCTTGCAATTGAGTCTGCCACACAGCTAGATAAAGACTCAAGTGATGGATTGCAACAAGTAACATGTGATGAGGAGAACGAGACTGTACAATTACCTCAAGGACCTGAAGTTACAGAGTACGCTGCACTTATTGCAGTTATTTACAGTATGATGAAGCAGAACTATGTTATGCAGGATAAGATTGTGAGATCGCTTAGTTTGAAGTCATCATCTGGTGAGCTAGAGACTTACAGTCTGATGTGGTCATTGCGCCCGTTTGTAGAAGATGAGATTGTGAACAGAGCATGGAAATGGATATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

220

Amino Acids

25.07

Weight (kDa)

5.25

Isoelectric Point (pI)

49.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7795	PF25071	6 - 126	7e-49	Domain of unknown function (DUF7795)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49645 AT3G49645
fragaria_vesca	FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_2g13330 FvH4_2g13330 FvH4_2g13330
malus_domestica	MD00G1139600.v1.1 MD01G1046300.v1.1 MD04G1240700.v1.1 MD15G1405500.v1.1
prunus_persica	Prupe.6G211100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0109701 RchiOBHm_Chr5g0054161 RchiOBHm_Chr6g0274761
rosa_laevigata	RLG00000013524 RLG00000017757 RLG00000017758 RLG00000030253 RLG00000030255 RLG00000030257 RLG00000030259 RLG00000030260 RLG00000030262 RLG00000030263
rosa_multiflora	Rmu_sc0000507.1_g000008 Rmu_sc0000509.1_g000038 Rmu_sc0001938.1_g000001 Rmu_sc0002076.1_g000012 Rmu_sc0006223.1_g000006 Rmu_sc0006889.1_g000015
rosa_roxburghii	Rroxscaffold_2G00134010 Rroxscaffold_4G00326300 Rroxscaffold_4G00326330 Rroxscaffold_7G00193960
rosa_rugosa	Rorug02G0162000 Rorug06G0083900 Rorug06G0084000 Rorug06G0084100
rosa_samantha	Rh2AG214500 Rh2BG224800 Rh2CG216700 Rh2DG220000 Rh5AG354600 Rh6AG199700 Rh6BG203400 Rh6CG203600 Rh6DG195100
rosa_wichuraiana	Rw0G009640 Rw1G004950 Rw6G017370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	205, 357
AcsI	RAATTY	1 cut(s)	30
AcuI	CTGAAG	2 cut(s)	41, 486
AfaI	GTAC	2 cut(s)	447, 479
AflIII	ACRYGT	1 cut(s)	422
AgsI	TTSAA	4 cut(s)	46, 77, 140, 562
AhdI	GACNNNNNGTC	1 cut(s)	591
AjuI	GAANNNNNNNTTGG	2 cut(s)	142, 174
AluBI	AGCT	5 cut(s)	73, 269, 334, 385, 580
AluI	AGCT	5 cut(s)	73, 269, 334, 385, 580
Alw26I	GTCTC	3 cut(s)	347, 434, 578
AoxI	GGCC	1 cut(s)	354
ApeKI	GCWGC	4 cut(s)	70, 92, 251, 482
ApoI	RAATTY	1 cut(s)	30
AseI	ATTAAT	1 cut(s)	237
AspLEI	GCGC	1 cut(s)	612
AspS9I	GGNCC	1 cut(s)	461
AsuHPI	GGTGA	1 cut(s)	587
AvaII	GGWCC	1 cut(s)	461
BbvI	GCAGC	4 cut(s)	79, 82, 238, 469
BccI	CCATC	1 cut(s)	398
BcoDI	GTCTC	3 cut(s)	347, 434, 578
BfaI	CTAG	3 cut(s)	83, 386, 581
BisI	GCNGC	6 cut(s)	71, 93, 206, 252, 357, 483
BlsI	GCNGC	6 cut(s)	72, 94, 207, 253, 358, 484
Bme18I	GGWCC	1 cut(s)	461
BmeRI	GACNNNNNGTC	1 cut(s)	591
BmgT120I	GGNCC	1 cut(s)	461
BmsI	GCATC	1 cut(s)	238
BpuEI	CTTGAG	2 cut(s)	382, 441
Bse3DI	GCAATG	1 cut(s)	605
BseGI	GGATG	1 cut(s)	236
BseMI	GCAATG	1 cut(s)	605
BseRI	GAGGAG	1 cut(s)	446
BseXI	GCAGC	4 cut(s)	79, 82, 238, 469
BsgI	GTGCAG	2 cut(s)	237, 468
BshFI	GGCC	1 cut(s)	356
BsmAI	GTCTC	3 cut(s)	347, 434, 578
BsmBI	CGTCTC	1 cut(s)	347
BsmI	GAATGC	1 cut(s)	94
BsnI	GGCC	1 cut(s)	356
Bsp1407I	TGTACA	1 cut(s)	445
Bsp143I	GATC	1 cut(s)	548
BspACI	CCGC	2 cut(s)	205, 357
BspANI	GGCC	1 cut(s)	356
BsrDI	GCAATG	1 cut(s)	605
BsrGI	TGTACA	1 cut(s)	445
BssMI	GATC	1 cut(s)	548
Bst4CI	ACNGT	5 cut(s)	61, 114, 445, 506, 593
BstAPI	GCANNNNNTGC	1 cut(s)	491
BstAUI	TGTACA	1 cut(s)	445
BstDEI	CTNAG	2 cut(s)	128, 554
BstF5I	GGATG	1 cut(s)	236
BstHHI	GCGC	1 cut(s)	612
BstKTI	GATC	1 cut(s)	551
BstMAI	GTCTC	3 cut(s)	347, 434, 578
BstMBI	GATC	1 cut(s)	548
BstMWI	GCNNNNNNNGC	2 cut(s)	362, 491
BstNSI	RCATGY	1 cut(s)	426
BstV1I	GCAGC	4 cut(s)	79, 82, 238, 469
BsuRI	GGCC	1 cut(s)	356
BtsCI	GGATG	1 cut(s)	236
BtsIMutI	CAGTG	1 cut(s)	345
CfoI	GCGC	1 cut(s)	612
Cfr13I	GGNCC	1 cut(s)	461
Csp6I	GTAC	2 cut(s)	446, 478
CviAII	CATG	3 cut(s)	245, 423, 645
CviJI	RGCY	8 cut(s)	73, 208, 269, 314, 334, 356, 385, 580
CviKI_1	RGCY	8 cut(s)	73, 208, 269, 314, 334, 356, 385, 580
CviQI	GTAC	2 cut(s)	446, 478
DdeI	CTNAG	2 cut(s)	128, 554
DpnI	GATC	1 cut(s)	550
DpnII	GATC	1 cut(s)	548
DriI	GACNNNNNGTC	1 cut(s)	591
Eam1105I	GACNNNNNGTC	1 cut(s)	591
Eco47I	GGWCC	1 cut(s)	461
Eco57I	CTGAAG	2 cut(s)	41, 486
EcoO109I	RGGNCCY	1 cut(s)	461
Esp3I	CGTCTC	1 cut(s)	347
FaeI	CATG	3 cut(s)	248, 426, 648
FatI	CATG	3 cut(s)	244, 422, 644
Fnu4HI	GCNGC	6 cut(s)	71, 93, 206, 252, 357, 483
FokI	GGATG	1 cut(s)	243
Fsp4HI	GCNGC	6 cut(s)	71, 93, 206, 252, 357, 483
FspBI	CTAG	3 cut(s)	83, 386, 581
GlaI	GCGC	1 cut(s)	611
GluI	GCNGC	6 cut(s)	71, 93, 206, 252, 357, 483
HaeIII	GGCC	1 cut(s)	356
HhaI	GCGC	1 cut(s)	612
Hin1II	CATG	3 cut(s)	248, 426, 648
Hin6I	GCGC	1 cut(s)	610
HinP1I	GCGC	1 cut(s)	610
HinfI	GANTC	2 cut(s)	371, 395
HphI	GGTGA	1 cut(s)	587
Hpy166II	GTNNAC	1 cut(s)	637
Hpy188I	TCNGA	3 cut(s)	37, 298, 597
Hpy188III	TCNNGA	2 cut(s)	187, 288
Hpy8I	GTNNAC	1 cut(s)	637
HpyCH4III	ACNGT	5 cut(s)	61, 114, 445, 506, 593
HpyCH4IV	ACGT	1 cut(s)	340
HpyCH4V	TGCA	8 cut(s)	95, 254, 274, 365, 412, 485, 494, 532
HpyF10VI	GCNNNNNNNGC	2 cut(s)	362, 491
HpyF3I	CTNAG	2 cut(s)	128, 554
HpySE526I	ACGT	1 cut(s)	340
Hsp92II	CATG	3 cut(s)	248, 426, 648
HspAI	GCGC	1 cut(s)	610
Kzo9I	GATC	1 cut(s)	548
LpnPI	CCDG	6 cut(s)	213, 273, 320, 477, 518, 558
Lsp1109I	GCAGC	4 cut(s)	79, 82, 238, 469
LweI	GCATC	1 cut(s)	238
MaeI	CTAG	3 cut(s)	83, 386, 581
MaeII	ACGT	1 cut(s)	340
MaeIII	GTNAC	3 cut(s)	154, 418, 469
MalI	GATC	1 cut(s)	550
MboI	GATC	1 cut(s)	548
MboII	GAAGA	7 cut(s)	34, 37, 89, 98, 128, 202, 635
MfeI	CAATTG	1 cut(s)	366
MluCI	AATT	3 cut(s)	30, 366, 449
MlyI	GAGTC	2 cut(s)	380, 389
MnlI	CCTC	5 cut(s)	156, 217, 346, 424, 465
MseI	TTAA	2 cut(s)	210, 237
MslI	CAYNNNNRTG	1 cut(s)	649
MunI	CAATTG	1 cut(s)	366
Mva1269I	GAATGC	1 cut(s)	94
MwoI	GCNNNNNNNGC	2 cut(s)	362, 491
NdeII	GATC	1 cut(s)	548
NlaIII	CATG	3 cut(s)	248, 426, 648
NspI	RCATGY	1 cut(s)	426
PciI	ACATGT	1 cut(s)	422
PctI	GAATGC	1 cut(s)	94
PkrI	GCNGC	6 cut(s)	72, 94, 207, 253, 358, 484
PleI	GAGTC	2 cut(s)	379, 389
PpsI	GAGTC	2 cut(s)	379, 389
PpuMI	RGGWCCY	1 cut(s)	461
PscI	ACATGT	1 cut(s)	422
PshBI	ATTAAT	1 cut(s)	237
Psp5II	RGGWCCY	1 cut(s)	461
PspPI	GGNCC	1 cut(s)	461
PspPPI	RGGWCCY	1 cut(s)	461
RsaI	GTAC	2 cut(s)	447, 479
RsaNI	GTAC	2 cut(s)	446, 478
RseI	CAYNNNNRTG	1 cut(s)	649
SaqAI	TTAA	2 cut(s)	210, 237
SatI	GCNGC	6 cut(s)	71, 93, 206, 252, 357, 483
Sau3AI	GATC	1 cut(s)	548
Sau96I	GGNCC	1 cut(s)	461
SchI	GAGTC	2 cut(s)	380, 389
SetI	ASST	9 cut(s)	75, 271, 306, 336, 343, 387, 457, 466, 582
SfaNI	GCATC	1 cut(s)	238
SinI	GGWCC	1 cut(s)	461
SmiMI	CAYNNNNRTG	1 cut(s)	649
SmlI	CTYRAG	2 cut(s)	397, 456
SmoI	CTYRAG	2 cut(s)	397, 456
Sse9I	AATT	3 cut(s)	30, 366, 449
SsiI	CCGC	2 cut(s)	205, 357
SspMI	CTAG	3 cut(s)	83, 386, 581
TaaI	ACNGT	5 cut(s)	61, 114, 445, 506, 593
TaiI	ACGT	1 cut(s)	343
TaqI	TCGA	1 cut(s)	222
TasI	AATT	3 cut(s)	30, 366, 449
TatI	WGTACW	1 cut(s)	445
TauI	GCSGC	2 cut(s)	208, 359
Tru1I	TTAA	2 cut(s)	210, 237
Tru9I	TTAA	2 cut(s)	210, 237
TscAI	CASTG	1 cut(s)	352
TseI	GCWGC	4 cut(s)	70, 92, 251, 482
TspDTI	ATGAA	2 cut(s)	210, 527
TspRI	CASTG	1 cut(s)	352
VpaK11BI	GGWCC	1 cut(s)	461
VspI	ATTAAT	1 cut(s)	237
XapI	RAATTY	1 cut(s)	30
XceI	RCATGY	1 cut(s)	426
XspI	CTAG	3 cut(s)	83, 386, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.