Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001304

Physical Location & Seq

Genomic Coordinates Forward (+)

34058184 .. 34061654

Gene Structure 3471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG203600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGGGAAATCATCTCTGCCTCCTGGTTTTCGGTTCAATCCTACTGATGTTGAGCTGGTACAATATTATTTGAAGAGGAAGGTAATGGGAAAGAGACTCCATGTTAAAGTTATTGCTGAGGTGGACATTTACAAATGGGCTCCTTGGGATCTTCCAGACAAGTCTTGTTGGCGAAGTGGAGATTTGAAGTGGTACTTCTTTAGTCCTAGAGAGAAAAAATATGCAAGTGGAGCTAGAATGAATCGTGCCACTGACCGTGGTTACTGGAAAACCACAGGAAAGGATAGATCTGTTCTTTACAGTAATGAAGTTGTTGGGTGGATTAAAACATTAATTTTCCACACCGGTCGAGCTCCACGAGGACAGCGGACTGATTGGGTTTTACATGAGTATAGGCTTGAAGACAAGAAACTGGTTGATATGGGTGTGCCTCAGGATTCTTATGTGCTCTGTATGGTTTTCCAAAAGGATGGGATAGGACCAAGAAGCAATAAACAATATGGTGCACCCTTCAAAGAGGAAGATTGGACTGATGATGAGGTTGAAACTGATGTAGTTCCACATGTAAACATGTCTGAGCCAAACCTTGTTCATGCAAACATTCATCAGCCAGAGCCACATCTTAATCATTCAAACATGCCTGAGCCAGACCTTGTTCAAGCAAACATACCTGATCAAGTACCTGTTAATTCAAACATCACTGAGCCCGATCTTGTTTATGGAAACATGCCCGACCCATACCTTGTTTATCCAAACATGCCTGAATCAGACCTTGATTATGCAAACATGCCTCAATCAGACCTTGGTTATGCAAACATGTCTGAGCCATCCCTTGTCTTTCCCAGCAACTATAATAGCTCTATTGCTACTCGCACCAATTCCCGTGAGTCTTGTGTTTCTGATATCTTGCCACCTTCTAGCAATGTTCTGCAGTCTGTTTCCAGTAATTATGTTACAACAGAGAAACCTCATGTTTCAACTGATGATGATATCATGTCGATGCTTAACTGCTTTACAGAAGAAGGAACTTTCTCCATGAGTGACATTGACAAAAATGAGGTTTGTCATTTACTCTTTTTTCTTACATTCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

364

Amino Acids

41.68

Weight (kDa)

5.13

Isoelectric Point (pI)

54.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	7 - 133	1.1e-44	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49645 AT3G49645
fragaria_vesca	FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_2g13330 FvH4_2g13330 FvH4_2g13330
malus_domestica	MD00G1139600.v1.1 MD01G1046300.v1.1 MD04G1240700.v1.1 MD15G1405500.v1.1
prunus_persica	Prupe.6G211100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0109701 RchiOBHm_Chr5g0054161 RchiOBHm_Chr6g0274761
rosa_laevigata	RLG00000013524 RLG00000017757 RLG00000017758 RLG00000030253 RLG00000030255 RLG00000030257 RLG00000030259 RLG00000030260 RLG00000030262 RLG00000030263
rosa_multiflora	Rmu_sc0000507.1_g000008 Rmu_sc0000509.1_g000038 Rmu_sc0001938.1_g000001 Rmu_sc0002076.1_g000012 Rmu_sc0006223.1_g000006 Rmu_sc0006889.1_g000015
rosa_roxburghii	Rroxscaffold_2G00134010 Rroxscaffold_4G00326300 Rroxscaffold_4G00326330 Rroxscaffold_7G00193960
rosa_rugosa	Rorug02G0162000 Rorug06G0083900 Rorug06G0084000 Rorug06G0084100
rosa_samantha	Rh2AG214500 Rh2BG224800 Rh2CG216700 Rh2DG220000 Rh5AG354600 Rh6AG199700 Rh6BG203400 Rh6CG203600 Rh6DG195100
rosa_wichuraiana	Rw0G009640 Rw1G004950 Rw6G017370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	367
AclWI	GGATC	1 cut(s)	156
AfaI	GTAC	3 cut(s)	60, 194, 681
AflIII	ACRYGT	3 cut(s)	562, 570, 816
AgeI	ACCGGT	1 cut(s)	344
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	4 cut(s)	55, 233, 353, 858
AluI	AGCT	4 cut(s)	55, 233, 353, 858
Alw21I	GWGCWC	3 cut(s)	355, 450, 508
Alw26I	GTCTC	1 cut(s)	88
Alw44I	GTGCAC	1 cut(s)	504
AlwI	GGATC	1 cut(s)	156
ApaLI	GTGCAC	1 cut(s)	504
AseI	ATTAAT	1 cut(s)	332
AsiGI	ACCGGT	1 cut(s)	344
AspS9I	GGNCC	1 cut(s)	479
AvaII	GGWCC	1 cut(s)	479
AxyI	CCTNAGG	1 cut(s)	432
BaeGI	GKGCMC	1 cut(s)	508
BanII	GRGCYC	3 cut(s)	142, 355, 708
BauI	CACGAG	1 cut(s)	357
BbsI	GAAGAC	1 cut(s)	408
Bbv12I	GWGCWC	3 cut(s)	355, 450, 508
BbvCI	CCTCAGC	1 cut(s)	117
BccI	CCATC	2 cut(s)	464, 835
BciT130I	CCWGG	1 cut(s)	24
BclI	TGATCA	1 cut(s)	673
BcoDI	GTCTC	1 cut(s)	88
BfaI	CTAG	3 cut(s)	207, 234, 918
BfmI	CTRYAG	1 cut(s)	929
BglII	AGATCT	1 cut(s)	287
Bme1390I	CCNGG	1 cut(s)	24
Bme18I	GGWCC	1 cut(s)	479
BmgT120I	GGNCC	1 cut(s)	479
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	1 cut(s)	24
BmsI	GCATC	1 cut(s)	990
BpiI	GAAGAC	1 cut(s)	408
Bpu10I	CCTNAGC	2 cut(s)	117, 642
BsaJI	CCNNGG	3 cut(s)	143, 256, 802
BsaWI	WCCGGW	1 cut(s)	344
Bse118I	RCCGGY	1 cut(s)	344
Bse1I	ACTGG	3 cut(s)	269, 417, 942
Bse21I	CCTNAGG	1 cut(s)	432
Bse3DI	GCAATG	1 cut(s)	928
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	3 cut(s)	143, 256, 802
BseGI	GGATG	2 cut(s)	475, 827
BseMI	GCAATG	1 cut(s)	928
BseMII	CTCAG	6 cut(s)	108, 446, 567, 633, 693, 813
BseNI	ACTGG	3 cut(s)	269, 417, 942
BseSI	GKGCMC	1 cut(s)	508
BseYI	CCCAGC	1 cut(s)	842
Bsh1285I	CGRYCG	1 cut(s)	349
BshTI	ACCGGT	1 cut(s)	344
BsiEI	CGRYCG	1 cut(s)	349
BsiHKAI	GWGCWC	3 cut(s)	355, 450, 508
BsiSI	CCGG	1 cut(s)	345
BsmAI	GTCTC	1 cut(s)	88
Bsp1286I	GDGCHC	5 cut(s)	142, 355, 450, 508, 708
Bsp143I	GATC	4 cut(s)	148, 287, 673, 709
BspACI	CCGC	1 cut(s)	367
BspCNI	CTCAG	6 cut(s)	109, 445, 568, 634, 694, 814
BspLI	GGNNCC	1 cut(s)	141
BspMAI	CTGCAG	1 cut(s)	933
BspPI	GGATC	1 cut(s)	156
BsrDI	GCAATG	1 cut(s)	928
BsrFI	RCCGGY	1 cut(s)	344
BsrI	ACTGG	3 cut(s)	269, 417, 942
BssAI	RCCGGY	1 cut(s)	344
BssECI	CCNNGG	3 cut(s)	143, 256, 802
BssMI	GATC	4 cut(s)	148, 287, 673, 709
BssSI	CACGAG	1 cut(s)	357
BssT1I	CCWWGG	2 cut(s)	143, 802
Bst2BI	CACGAG	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	2 cut(s)	257, 302
Bst6I	CTCTTC	1 cut(s)	68
BstDEI	CTNAG	6 cut(s)	117, 432, 576, 642, 702, 822
BstDSI	CCRYGG	1 cut(s)	256
BstF5I	GGATG	2 cut(s)	475, 827
BstKTI	GATC	4 cut(s)	151, 290, 676, 712
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	4 cut(s)	148, 287, 673, 709
BstMCI	CGRYCG	1 cut(s)	349
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstNI	CCWGG	1 cut(s)	24
BstNSI	RCATGY	7 cut(s)	566, 574, 640, 730, 760, 790, 820
BstSCI	CCNGG	1 cut(s)	22
BstSFI	CTRYAG	1 cut(s)	929
BstSLI	GKGCMC	1 cut(s)	508
BstV2I	GAAGAC	1 cut(s)	408
BstX2I	RGATCY	2 cut(s)	148, 287
BstXI	CCANNNNNNTGG	1 cut(s)	470
BstYI	RGATCY	2 cut(s)	148, 287
Bsu36I	CCTNAGG	1 cut(s)	432
BtgI	CCRYGG	1 cut(s)	256
BtsCI	GGATG	2 cut(s)	475, 827
BtsIMutI	CAGTG	2 cut(s)	249, 699
Cfr10I	RCCGGY	1 cut(s)	344
Cfr13I	GGNCC	1 cut(s)	479
Csp6I	GTAC	3 cut(s)	59, 193, 680
CspAI	ACCGGT	1 cut(s)	344
CviQI	GTAC	3 cut(s)	59, 193, 680
DdeI	CTNAG	6 cut(s)	117, 432, 576, 642, 702, 822
DpnI	GATC	4 cut(s)	150, 289, 675, 711
DpnII	GATC	4 cut(s)	148, 287, 673, 709
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Ecl136II	GAGCTC	1 cut(s)	353
Eco130I	CCWWGG	2 cut(s)	143, 802
Eco24I	GRGCYC	3 cut(s)	142, 355, 708
Eco32I	GATATC	2 cut(s)	904, 991
Eco47I	GGWCC	1 cut(s)	479
Eco53kI	GAGCTC	1 cut(s)	353
Eco81I	CCTNAGG	1 cut(s)	432
EcoICRI	GAGCTC	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	22
EcoRV	GATATC	2 cut(s)	904, 991
EcoT14I	CCWWGG	2 cut(s)	143, 802
EcoT38I	GRGCYC	3 cut(s)	142, 355, 708
ErhI	CCWWGG	2 cut(s)	143, 802
FalI	AAGNNNNNCTT	2 cut(s)	179, 211
FbaI	TGATCA	1 cut(s)	673
FokI	GGATG	2 cut(s)	482, 814
FriOI	GRGCYC	3 cut(s)	142, 355, 708
FspBI	CTAG	3 cut(s)	207, 234, 918
GsaI	CCCAGC	1 cut(s)	846
HapII	CCGG	1 cut(s)	345
HinfI	GANTC	5 cut(s)	96, 241, 437, 764, 887
HpaII	CCGG	1 cut(s)	345
Hpy166II	GTNNAC	3 cut(s)	124, 506, 568
Hpy188I	TCNGA	5 cut(s)	577, 769, 799, 823, 901
Hpy188III	TCNNGA	2 cut(s)	155, 434
Hpy8I	GTNNAC	3 cut(s)	124, 506, 568
HpyAV	CCTTC	4 cut(s)	73, 520, 924, 1016
HpyCH4III	ACNGT	2 cut(s)	257, 302
HpyCH4V	TGCA	6 cut(s)	224, 506, 596, 782, 812, 931
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	6 cut(s)	117, 432, 576, 642, 702, 822
Ksp22I	TGATCA	1 cut(s)	673
Kzo9I	GATC	4 cut(s)	148, 287, 673, 709
LmnI	GCTCC	3 cut(s)	145, 230, 358
LweI	GCATC	1 cut(s)	990
MaeI	CTAG	3 cut(s)	207, 234, 918
MaeIII	GTNAC	3 cut(s)	260, 952, 1040
MalI	GATC	4 cut(s)	150, 289, 675, 711
MboI	GATC	4 cut(s)	148, 287, 673, 709
MboII	GAAGA	5 cut(s)	85, 143, 413, 533, 1031
MflI	RGATCY	2 cut(s)	148, 287
MhlI	GDGCHC	5 cut(s)	142, 355, 450, 508, 708
MluCI	AATT	4 cut(s)	333, 688, 877, 946
MlyI	GAGTC	2 cut(s)	90, 896
MseI	TTAA	6 cut(s)	105, 324, 332, 624, 687, 1005
MslI	CAYNNNNRTG	2 cut(s)	998, 1090
MspA1I	CMGCKG	1 cut(s)	367
MspI	CCGG	1 cut(s)	345
MspR9I	CCNGG	1 cut(s)	24
MvaI	CCWGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	1 cut(s)	230
NdeII	GATC	4 cut(s)	148, 287, 673, 709
NlaIV	GGNNCC	1 cut(s)	141
NmuCI	GTSAC	1 cut(s)	1040
NspI	RCATGY	7 cut(s)	566, 574, 640, 730, 760, 790, 820
PciI	ACATGT	3 cut(s)	562, 570, 816
PcsI	WCGNNNNNNNCGW	1 cut(s)	355
PfeI	GAWTC	3 cut(s)	241, 437, 764
PinAI	ACCGGT	1 cut(s)	344
PleI	GAGTC	2 cut(s)	90, 895
PpsI	GAGTC	2 cut(s)	90, 895
PscI	ACATGT	3 cut(s)	562, 570, 816
PshBI	ATTAAT	1 cut(s)	332
Psp124BI	GAGCTC	1 cut(s)	355
Psp6I	CCWGG	1 cut(s)	22
PspFI	CCCAGC	1 cut(s)	842
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	1 cut(s)	141
PspPI	GGNCC	1 cut(s)	479
PstI	CTGCAG	1 cut(s)	933
PsuI	RGATCY	2 cut(s)	148, 287
RsaI	GTAC	3 cut(s)	60, 194, 681
RsaNI	GTAC	3 cut(s)	59, 193, 680
RseI	CAYNNNNRTG	2 cut(s)	998, 1090
SacI	GAGCTC	1 cut(s)	355
SaqAI	TTAA	6 cut(s)	105, 324, 332, 624, 687, 1005
Sau3AI	GATC	4 cut(s)	148, 287, 673, 709
Sau96I	GGNCC	1 cut(s)	479
SchI	GAGTC	2 cut(s)	90, 896
ScrFI	CCNGG	1 cut(s)	24
SduI	GDGCHC	5 cut(s)	142, 355, 450, 508, 708
SfaNI	GCATC	1 cut(s)	990
SfcI	CTRYAG	1 cut(s)	929
SinI	GGWCC	1 cut(s)	479
SmiMI	CAYNNNNRTG	2 cut(s)	998, 1090
Sse9I	AATT	4 cut(s)	333, 688, 877, 946
SsiI	CCGC	1 cut(s)	367
SspI	AATATT	1 cut(s)	65
SspMI	CTAG	3 cut(s)	207, 234, 918
SstI	GAGCTC	1 cut(s)	355
StyD4I	CCNGG	1 cut(s)	22
StyI	CCWWGG	2 cut(s)	143, 802
TaaI	ACNGT	2 cut(s)	257, 302
TaqI	TCGA	3 cut(s)	349, 998, 1089
TasI	AATT	4 cut(s)	333, 688, 877, 946
TfiI	GAWTC	3 cut(s)	241, 437, 764
Tru1I	TTAA	6 cut(s)	105, 324, 332, 624, 687, 1005
Tru9I	TTAA	6 cut(s)	105, 324, 332, 624, 687, 1005
TscAI	CASTG	2 cut(s)	256, 706
TseFI	GTSAC	1 cut(s)	1040
Tsp45I	GTSAC	1 cut(s)	1040
TspDTI	ATGAA	4 cut(s)	254, 321, 581, 593
TspRI	CASTG	2 cut(s)	256, 706
VneI	GTGCAC	1 cut(s)	504
VpaK11BI	GGWCC	1 cut(s)	479
VspI	ATTAAT	1 cut(s)	332
XceI	RCATGY	7 cut(s)	566, 574, 640, 730, 760, 790, 820
XspI	CTAG	3 cut(s)	207, 234, 918

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.