Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001304

Physical Location & Seq

Genomic Coordinates Forward (+)

11148694 .. 11150782

Gene Structure 2089 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0084100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGAAAGATGCCAAGGAGCACTTTCATTGGATTGGGACAGTTCATACTTCAAGTGACACTCTTCAGTGTGTAGACCGAAACGATCCATCTGATCTACCTCTGTTGGACTTCGATAGCATATCAATTGCCACAAACTTCTTCAACGCAGCAAACAAACTTGGGCAAGGAGGATTTGGTCCTGTGTATAAGGGAGAGCTGCAAGATGGAAGGGACATAGCAGTCAAAAGACTATCTAGTAGCTCAGGGCAAGGGGTTGAAGAGTTTAAGAATGAGATTATTTTGATCTCTAAACTTCGACACAGAAATCTTGTTAGGCTCATGGGTTATTGCATTGACAGAGAAGAGAGGTTGCTAATATATGAGTTCCTGCAGAACAAAAGTATGGACACTTTTCTTTTTGATGAATTAAGAAGAGCAGAGCTTACATGGGAGAGACGCTTCAACATTATTCATGGCATTGCCAGAGGACTTCTATATCTCCATCGTGATTCAAATTTAAGGGTAATACACAGGGACTTGAAGGTCAGCAATATTCTCTTGGACGAGAAGATGAACCCAAAAATCTCAGATTTTGGACTGGCACGGATGTTTCAGGGGACACTGGAACTAGCAACTACTCACAGACTAGTGGGAACACTCGACTATATGTCTCCAGAGTATGCCATGGGTGGAACATTTTCTGTAAAATCTGATGTCTTTAGCTTTGGTGTCTTGTTATTGGAGATAGTCAGTGGCAGGAAGAACACCAGCTTCCATTATTGTGATCAACCGATAAGCCTTGTTGCCTATGCATGGCAATTATGGAGCGAATGCAGGGGACTTGACTTAATGGATGAAGTTTTGGCCGACTCAGTTTCTCCATCAGAAGTTCTAAGATGCATTCGTGTTGGTCTTCTTTGTGTACAGGACCTTGCCATGGATAGGCCAACAACACCGGATTCAGTTTCCATGCTAGTTAGTGAAACAGATCGTCCACAACCCAAACAACCTATATTTGCTTTTCAGAGCTCGTTACAATGTGATCTAGCGACACAAAGTGACAATGTATGCTCCCTAAACGAAGCAAGCATCACAGTACTCCAAGCGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

363

Amino Acids

41.1

Weight (kDa)

5.54

Isoelectric Point (pI)

47.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	48 - 247	3.6e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	50 - 247	3.7e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49645 AT3G49645
fragaria_vesca	FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_2g13330 FvH4_2g13330 FvH4_2g13330
malus_domestica	MD00G1139600.v1.1 MD01G1046300.v1.1 MD04G1240700.v1.1 MD15G1405500.v1.1
prunus_persica	Prupe.6G211100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0109701 RchiOBHm_Chr5g0054161 RchiOBHm_Chr6g0274761
rosa_laevigata	RLG00000013524 RLG00000017757 RLG00000017758 RLG00000030253 RLG00000030255 RLG00000030257 RLG00000030259 RLG00000030260 RLG00000030262 RLG00000030263
rosa_multiflora	Rmu_sc0000507.1_g000008 Rmu_sc0000509.1_g000038 Rmu_sc0001938.1_g000001 Rmu_sc0002076.1_g000012 Rmu_sc0006223.1_g000006 Rmu_sc0006889.1_g000015
rosa_roxburghii	Rroxscaffold_2G00134010 Rroxscaffold_4G00326300 Rroxscaffold_4G00326330 Rroxscaffold_7G00193960
rosa_rugosa	Rorug02G0162000 Rorug06G0083900 Rorug06G0084000 Rorug06G0084100
rosa_samantha	Rh2AG214500 Rh2BG224800 Rh2CG216700 Rh2DG220000 Rh5AG354600 Rh6AG199700 Rh6BG203400 Rh6CG203600 Rh6DG195100
rosa_wichuraiana	Rw0G009640 Rw1G004950 Rw6G017370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	218, 521
AccI	GTMKAC	1 cut(s)	72
AclWI	GGATC	1 cut(s)	77
AcoI	YGGCCR	1 cut(s)	843
AcsI	RAATTY	1 cut(s)	493
AcuI	CTGAAG	1 cut(s)	47
AdeI	CACNNNGTG	1 cut(s)	1037
AfaI	GTAC	2 cut(s)	903, 1077
AfiI	CCNNNNNNNGG	3 cut(s)	792, 916, 921
AgsI	TTSAA	6 cut(s)	51, 142, 257, 442, 492, 520
AhdI	GACNNNNNGTC	1 cut(s)	646
AhlI	ACTAGT	1 cut(s)	625
AluBI	AGCT	6 cut(s)	196, 240, 421, 702, 750, 1008
AluI	AGCT	6 cut(s)	196, 240, 421, 702, 750, 1008
Alw21I	GWGCWC	2 cut(s)	21, 1010
Alw26I	GTCTC	2 cut(s)	427, 654
AlwI	GGATC	1 cut(s)	77
AoxI	GGCC	2 cut(s)	843, 923
ApeKI	GCWGC	2 cut(s)	146, 196
ApoI	RAATTY	1 cut(s)	493
Asp700I	GAANNNNTTC	1 cut(s)	676
AspS9I	GGNCC	2 cut(s)	176, 907
AvaII	GGWCC	2 cut(s)	176, 907
BanII	GRGCYC	1 cut(s)	1010
BbsI	GAAGAC	1 cut(s)	884
Bbv12I	GWGCWC	2 cut(s)	21, 1010
BbvI	GCAGC	2 cut(s)	158, 183
BccI	CCATC	4 cut(s)	94, 197, 489, 868
BclI	TGATCA	1 cut(s)	763
BcoDI	GTCTC	2 cut(s)	427, 654
BcuI	ACTAGT	1 cut(s)	625
BfaI	CTAG	5 cut(s)	234, 608, 626, 953, 1025
BfmI	CTRYAG	1 cut(s)	368
BisI	GCNGC	2 cut(s)	147, 197
BlsI	GCNGC	2 cut(s)	148, 198
BmcAI	AGTACT	1 cut(s)	1077
Bme18I	GGWCC	2 cut(s)	176, 907
BmeRI	GACNNNNNGTC	1 cut(s)	646
BmgT120I	GGNCC	2 cut(s)	176, 907
BmsI	GCATC	2 cut(s)	866, 1077
BpiI	GAAGAC	1 cut(s)	884
BpmI	CTGGAG	1 cut(s)	636
Bpu10I	CCTNAGC	1 cut(s)	241
BsaJI	CCNNGG	3 cut(s)	12, 663, 915
BsaWI	WCCGGW	1 cut(s)	934
Bsc4I	CCNNNNNNNGG	3 cut(s)	792, 916, 921
Bse1I	ACTGG	2 cut(s)	582, 606
Bse3DI	GCAATG	1 cut(s)	456
BseDI	CCNNGG	3 cut(s)	12, 663, 915
BseGI	GGATG	2 cut(s)	591, 838
BseLI	CCNNNNNNNGG	3 cut(s)	792, 916, 921
BseMI	GCAATG	1 cut(s)	456
BseMII	CTCAG	3 cut(s)	255, 579, 864
BseNI	ACTGG	2 cut(s)	582, 606
BseXI	GCAGC	2 cut(s)	158, 183
BshFI	GGCC	2 cut(s)	845, 925
BsiHKAI	GWGCWC	2 cut(s)	21, 1010
BsiSI	CCGG	1 cut(s)	935
BslFI	GGGAC	5 cut(s)	49, 224, 527, 610, 831
BslI	CCNNNNNNNGG	3 cut(s)	792, 916, 921
BsmAI	GTCTC	2 cut(s)	427, 654
BsmBI	CGTCTC	1 cut(s)	427
BsmFI	GGGAC	5 cut(s)	49, 224, 527, 610, 831
BsmI	GAATGC	2 cut(s)	815, 879
BsnI	GGCC	2 cut(s)	845, 925
Bsp1286I	GDGCHC	2 cut(s)	21, 1010
Bsp1407I	TGTACA	1 cut(s)	901
Bsp143I	GATC	6 cut(s)	82, 91, 282, 763, 967, 1021
Bsp19I	CCATGG	2 cut(s)	663, 915
BspANI	GGCC	2 cut(s)	845, 925
BspCNI	CTCAG	3 cut(s)	254, 578, 863
BspMAI	CTGCAG	1 cut(s)	372
BspPI	GGATC	1 cut(s)	77
BspQI	GCTCTTC	1 cut(s)	406
BsrDI	GCAATG	1 cut(s)	456
BsrGI	TGTACA	1 cut(s)	901
BsrI	ACTGG	2 cut(s)	582, 606
BssECI	CCNNGG	3 cut(s)	12, 663, 915
BssMI	GATC	6 cut(s)	82, 91, 282, 763, 967, 1021
BssT1I	CCWWGG	3 cut(s)	12, 663, 915
Bst4CI	ACNGT	2 cut(s)	40, 1075
Bst6I	CTCTTC	4 cut(s)	66, 252, 336, 406
BstAUI	TGTACA	1 cut(s)	901
BstC8I	GCNNGC	1 cut(s)	1066
BstDEI	CTNAG	4 cut(s)	241, 565, 850, 872
BstDSI	CCRYGG	2 cut(s)	663, 915
BstF5I	GGATG	2 cut(s)	591, 838
BstKTI	GATC	6 cut(s)	85, 94, 285, 766, 970, 1024
BstMAI	GTCTC	2 cut(s)	427, 654
BstMBI	GATC	6 cut(s)	82, 91, 282, 763, 967, 1021
BstSFI	CTRYAG	1 cut(s)	368
BstV1I	GCAGC	2 cut(s)	158, 183
BstV2I	GAAGAC	1 cut(s)	884
BsuRI	GGCC	2 cut(s)	845, 925
BtgI	CCRYGG	2 cut(s)	663, 915
BtsCI	GGATG	2 cut(s)	591, 838
BtsIMutI	CAGTG	3 cut(s)	71, 599, 736
Cac8I	GCNNGC	1 cut(s)	1066
Cfr13I	GGNCC	2 cut(s)	176, 907
CseI	GACGC	1 cut(s)	444
Csp6I	GTAC	2 cut(s)	902, 1076
CviAII	CATG	7 cut(s)	319, 426, 452, 664, 792, 916, 949
CviQI	GTAC	2 cut(s)	902, 1076
DdeI	CTNAG	4 cut(s)	241, 565, 850, 872
DpnI	GATC	6 cut(s)	84, 93, 284, 765, 969, 1023
DpnII	GATC	6 cut(s)	82, 91, 282, 763, 967, 1021
DraIII	CACNNNGTG	1 cut(s)	1037
DrdI	GACNNNNNNGTC	2 cut(s)	218, 521
DriI	GACNNNNNGTC	1 cut(s)	646
DseDI	GACNNNNNNGTC	2 cut(s)	218, 521
EaeI	YGGCCR	1 cut(s)	843
Eam1104I	CTCTTC	4 cut(s)	66, 252, 336, 406
Eam1105I	GACNNNNNGTC	1 cut(s)	646
EarI	CTCTTC	4 cut(s)	66, 252, 336, 406
Ecl136II	GAGCTC	1 cut(s)	1008
Eco130I	CCWWGG	3 cut(s)	12, 663, 915
Eco24I	GRGCYC	1 cut(s)	1010
Eco47I	GGWCC	2 cut(s)	176, 907
Eco53kI	GAGCTC	1 cut(s)	1008
Eco57I	CTGAAG	1 cut(s)	47
EcoICRI	GAGCTC	1 cut(s)	1008
EcoO109I	RGGNCCY	1 cut(s)	907
EcoT14I	CCWWGG	3 cut(s)	12, 663, 915
EcoT22I	ATGCAT	2 cut(s)	793, 881
EcoT38I	GRGCYC	1 cut(s)	1010
ErhI	CCWWGG	3 cut(s)	12, 663, 915
Esp3I	CGTCTC	1 cut(s)	427
FaeI	CATG	7 cut(s)	322, 429, 455, 667, 795, 919, 952
FalI	AAGNNNNNCTT	1 cut(s)	37
FaqI	GGGAC	5 cut(s)	49, 224, 527, 610, 831
FatI	CATG	7 cut(s)	318, 425, 451, 663, 791, 915, 948
FbaI	TGATCA	1 cut(s)	763
FblI	GTMKAC	1 cut(s)	72
Fnu4HI	GCNGC	2 cut(s)	147, 197
FokI	GGATG	2 cut(s)	598, 845
FriOI	GRGCYC	1 cut(s)	1010
Fsp4HI	GCNGC	2 cut(s)	147, 197
FspBI	CTAG	5 cut(s)	234, 608, 626, 953, 1025
GluI	GCNGC	2 cut(s)	147, 197
GsuI	CTGGAG	1 cut(s)	636
HaeIII	GGCC	2 cut(s)	845, 925
HapII	CCGG	1 cut(s)	935
HgaI	GACGC	1 cut(s)	444
Hin1II	CATG	7 cut(s)	322, 429, 455, 667, 795, 919, 952
HinfI	GANTC	3 cut(s)	488, 848, 938
HpaII	CCGG	1 cut(s)	935
Hpy166II	GTNNAC	3 cut(s)	73, 902, 974
Hpy188I	TCNGA	5 cut(s)	91, 568, 691, 865, 1005
Hpy188III	TCNNGA	2 cut(s)	485, 653
Hpy8I	GTNNAC	3 cut(s)	73, 902, 974
HpyAV	CCTTC	2 cut(s)	201, 514
HpyCH4III	ACNGT	2 cut(s)	40, 1075
HpyCH4V	TGCA	6 cut(s)	199, 330, 370, 791, 813, 879
HpyF3I	CTNAG	4 cut(s)	241, 565, 850, 872
Hsp92II	CATG	7 cut(s)	322, 429, 455, 667, 795, 919, 952
Ksp22I	TGATCA	1 cut(s)	763
Kzo9I	GATC	6 cut(s)	82, 91, 282, 763, 967, 1021
LguI	GCTCTTC	1 cut(s)	406
LmnI	GCTCC	3 cut(s)	16, 804, 1055
Lsp1109I	GCAGC	2 cut(s)	158, 183
LweI	GCATC	2 cut(s)	866, 1077
MaeI	CTAG	5 cut(s)	234, 608, 626, 953, 1025
MaeIII	GTNAC	3 cut(s)	53, 1011, 1037
MalI	GATC	6 cut(s)	84, 93, 284, 765, 969, 1023
MboI	GATC	6 cut(s)	82, 91, 282, 763, 967, 1021
MboII	GAAGA	8 cut(s)	53, 130, 269, 353, 423, 559, 751, 884
MfeI	CAATTG	1 cut(s)	123
MhlI	GDGCHC	2 cut(s)	21, 1010
MluCI	AATT	4 cut(s)	123, 404, 493, 797
MlyI	GAGTC	1 cut(s)	842
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	4 cut(s)	108, 161, 339, 458
Mph1103I	ATGCAT	2 cut(s)	793, 881
MroXI	GAANNNNTTC	1 cut(s)	676
MseI	TTAA	4 cut(s)	264, 407, 497, 827
MslI	CAYNNNNRTG	1 cut(s)	759
MspI	CCGG	1 cut(s)	935
MunI	CAATTG	1 cut(s)	123
Mva1269I	GAATGC	2 cut(s)	815, 879
NcoI	CCATGG	2 cut(s)	663, 915
NdeII	GATC	6 cut(s)	82, 91, 282, 763, 967, 1021
NlaIII	CATG	7 cut(s)	322, 429, 455, 667, 795, 919, 952
NmuCI	GTSAC	2 cut(s)	53, 1037
NsiI	ATGCAT	2 cut(s)	793, 881
PciSI	GCTCTTC	1 cut(s)	406
PctI	GAATGC	2 cut(s)	815, 879
PdmI	GAANNNNTTC	1 cut(s)	676
PfeI	GAWTC	2 cut(s)	488, 938
PkrI	GCNGC	2 cut(s)	148, 198
PleI	GAGTC	1 cut(s)	842
PpsI	GAGTC	1 cut(s)	842
PpuMI	RGGWCCY	1 cut(s)	907
Psp124BI	GAGCTC	1 cut(s)	1010
Psp5II	RGGWCCY	1 cut(s)	907
PspPI	GGNCC	2 cut(s)	176, 907
PspPPI	RGGWCCY	1 cut(s)	907
PstI	CTGCAG	1 cut(s)	372
RsaI	GTAC	2 cut(s)	903, 1077
RsaNI	GTAC	2 cut(s)	902, 1076
RseI	CAYNNNNRTG	1 cut(s)	759
SacI	GAGCTC	1 cut(s)	1010
SapI	GCTCTTC	1 cut(s)	406
SaqAI	TTAA	4 cut(s)	264, 407, 497, 827
SatI	GCNGC	2 cut(s)	147, 197
Sau3AI	GATC	6 cut(s)	82, 91, 282, 763, 967, 1021
Sau96I	GGNCC	2 cut(s)	176, 907
ScaI	AGTACT	1 cut(s)	1077
SchI	GAGTC	1 cut(s)	842
SduI	GDGCHC	2 cut(s)	21, 1010
SfaNI	GCATC	2 cut(s)	866, 1077
SfcI	CTRYAG	1 cut(s)	368
SinI	GGWCC	2 cut(s)	176, 907
SmiMI	CAYNNNNRTG	1 cut(s)	759
SpeI	ACTAGT	1 cut(s)	625
Sse9I	AATT	4 cut(s)	123, 404, 493, 797
SspI	AATATT	1 cut(s)	532
SspMI	CTAG	5 cut(s)	234, 608, 626, 953, 1025
SstI	GAGCTC	1 cut(s)	1010
StyI	CCWWGG	3 cut(s)	12, 663, 915
TaaI	ACNGT	2 cut(s)	40, 1075
TaqI	TCGA	3 cut(s)	111, 295, 639
TaqII	GACCGA	1 cut(s)	90
TasI	AATT	4 cut(s)	123, 404, 493, 797
TatI	WGTACW	2 cut(s)	901, 1075
TfiI	GAWTC	2 cut(s)	488, 938
Tru1I	TTAA	4 cut(s)	264, 407, 497, 827
Tru9I	TTAA	4 cut(s)	264, 407, 497, 827
TscAI	CASTG	3 cut(s)	71, 606, 736
TseFI	GTSAC	2 cut(s)	53, 1037
TseI	GCWGC	2 cut(s)	146, 196
Tsp45I	GTSAC	2 cut(s)	53, 1037
TspDTI	ATGAA	7 cut(s)	14, 17, 32, 417, 440, 566, 849
TspGWI	ACGGA	1 cut(s)	598
TspRI	CASTG	3 cut(s)	71, 606, 736
VpaK11BI	GGWCC	2 cut(s)	176, 907
XapI	RAATTY	1 cut(s)	493
XmiI	GTMKAC	1 cut(s)	72
XmnI	GAANNNNTTC	1 cut(s)	676
XspI	CTAG	5 cut(s)	234, 608, 626, 953, 1025
ZrmI	AGTACT	1 cut(s)	1077
Zsp2I	ATGCAT	2 cut(s)	793, 881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.