Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001304

Physical Location & Seq

Genomic Coordinates Reverse (-)

50617656 .. 50621890

Gene Structure 4235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1405500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGCTGGGATATGATAGAGATGATTATGGTCAGTTAGGCGACGAATATGAGGATTATGAGGACGATGAGGATGGTGAAGAGTATGAAGGGGAAGAGGAAGATCAAAAGCCTACCAAGGAAGCATTGGCATACCTTGAGTTGAGACAACACTTGAAAGAACAATTACGAAAGAAGAAAAGTGGTTCTTCTTTGGCCAACTCCAGTAATAAAAAGAAGCTCCCCTATGACAATTTTGGATCTTTCGTTGGCCCATCTCAACCAGTTATTGCTGAGAGAGTTCAAGAAAGCAAATTGTTGTTAGAAACCAAGCACCTAACATCCAATGCTACCAACTCTGTCCATCATAACAAGAAGAGCTCTGGATCAACCTCTGCTGGATCGAAATCTGTATCGAATTTTGAATTCAAAGACAAAGTTATCAACTTGTTCAAAGATTTCATGGCCAGACTCGACAATTTTGACGAGTTGGTGGCCACTGGAAGCACATTACTCGTCGACTTTCAGCAGGGGCTGGAGTTTCTTCGACGACCTTGGATAGAAGAGACATCGGATTTGGTTAAAAACATAATCCGAGGTAATGAAACAAAGAGGGTTAAGTCATATGTTGAAGCTGGATGTCTCAACGCTGACGATGGCAGGCGAAATATAAGCAAGTTGCATACATGCCAACTTGGACTTTGTGACCATCTAAGTAAAGGCAAAAACGTTCTTAATGAACTTGAATGCCTCCTGGAGGATGTAAATGGTGCATTGCAAACTGCAATGGGAAATTTACCCAACTTTCAGGATGACAGTTTTGCGGACAAGTTGAATGAAGAAGCATGCAATGGTGACAAGGAGGAATTTACATCATCCCATCCCAAAAGAAATGAAGTTACCAATTATGTTGTCATGATGGGGGTCATTTACAGTATGGTCAAGCAAGACTATATGATGCAGGAGAGGATCGTCTCTGCTCTTAATCTCAAATCATCTTCAGGAGAATTAGAGAGCTACTGCCTGATGTGGTCTTTGCGTCCGTTCATAAATAACGAATTTATGGATTATGCTTGGAAACTTATTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

356

Amino Acids

40.38

Weight (kDa)

4.94

Isoelectric Point (pI)

41.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7795	PF25071	134 - 254	5.5e-53	Domain of unknown function (DUF7795)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49645 AT3G49645
fragaria_vesca	FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_2g13330 FvH4_2g13330 FvH4_2g13330
malus_domestica	MD00G1139600.v1.1 MD01G1046300.v1.1 MD04G1240700.v1.1 MD15G1405500.v1.1
prunus_persica	Prupe.6G211100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0109701 RchiOBHm_Chr5g0054161 RchiOBHm_Chr6g0274761
rosa_laevigata	RLG00000013524 RLG00000017757 RLG00000017758 RLG00000030253 RLG00000030255 RLG00000030257 RLG00000030259 RLG00000030260 RLG00000030262 RLG00000030263
rosa_multiflora	Rmu_sc0000507.1_g000008 Rmu_sc0000509.1_g000038 Rmu_sc0001938.1_g000001 Rmu_sc0002076.1_g000012 Rmu_sc0006223.1_g000006 Rmu_sc0006889.1_g000015
rosa_roxburghii	Rroxscaffold_2G00134010 Rroxscaffold_4G00326300 Rroxscaffold_4G00326330 Rroxscaffold_7G00193960
rosa_rugosa	Rorug02G0162000 Rorug06G0083900 Rorug06G0084000 Rorug06G0084100
rosa_samantha	Rh2AG214500 Rh2BG224800 Rh2CG216700 Rh2DG220000 Rh5AG354600 Rh6AG199700 Rh6BG203400 Rh6CG203600 Rh6DG195100
rosa_wichuraiana	Rw0G009640 Rw1G004950 Rw6G017370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	495
AciI	CCGC	1 cut(s)	800
AclI	AACGTT	1 cut(s)	705
AclWI	GGATC	4 cut(s)	244, 370, 385, 953
AcoI	YGGCCR	3 cut(s)	192, 441, 471
AcsI	RAATTY	5 cut(s)	394, 401, 769, 842, 1034
AcuI	CTGAAG	1 cut(s)	960
AfiI	CCNNNNNNNGG	1 cut(s)	733
AgsI	TTSAA	8 cut(s)	154, 281, 401, 406, 430, 608, 722, 811
AjnI	CCWGG	1 cut(s)	729
AluBI	AGCT	4 cut(s)	217, 357, 611, 993
AluI	AGCT	4 cut(s)	217, 357, 611, 993
Alw21I	GWGCWC	1 cut(s)	359
Alw26I	GTCTC	4 cut(s)	136, 536, 623, 955
AlwI	GGATC	4 cut(s)	244, 370, 385, 953
AlwNI	CAGNNNCTG	1 cut(s)	511
AoxI	GGCC	4 cut(s)	192, 247, 441, 471
ApoI	RAATTY	5 cut(s)	394, 401, 769, 842, 1034
ArsI	GACNNNNNNTTYG	2 cut(s)	535, 567
AspS9I	GGNCC	1 cut(s)	248
AsuHPI	GGTGA	2 cut(s)	86, 842
BalI	TGGCCA	3 cut(s)	194, 443, 473
BanII	GRGCYC	1 cut(s)	359
Bbv12I	GWGCWC	1 cut(s)	359
BccI	CCATC	7 cut(s)	65, 259, 348, 626, 693, 864, 889
BcgI	CGANNNNNNTGC	2 cut(s)	472, 506
BciT130I	CCWGG	1 cut(s)	731
BcoDI	GTCTC	4 cut(s)	136, 536, 623, 955
Bme1390I	CCNGG	1 cut(s)	731
BmgT120I	GGNCC	1 cut(s)	248
BmrFI	CCNGG	1 cut(s)	731
BmsI	GCATC	1 cut(s)	924
BpmI	CTGGAG	3 cut(s)	184, 533, 752
BpuEI	CTTGAG	1 cut(s)	155
BsaBI	GATNNNNATC	1 cut(s)	382
BsaJI	CCNNGG	3 cut(s)	114, 530, 571
Bsc4I	CCNNNNNNNGG	1 cut(s)	733
Bse1I	ACTGG	3 cut(s)	201, 260, 481
Bse3DI	GCAATG	3 cut(s)	749, 768, 832
Bse8I	GATNNNNATC	1 cut(s)	382
BseBI	CCWGG	1 cut(s)	731
BseDI	CCNNGG	3 cut(s)	114, 530, 571
BseGI	GGATG	7 cut(s)	76, 317, 620, 742, 793, 851, 856
BseJI	GATNNNNATC	1 cut(s)	382
BseLI	CCNNNNNNNGG	1 cut(s)	733
BseMI	GCAATG	3 cut(s)	749, 768, 832
BseMII	CTCAG	1 cut(s)	261
BseNI	ACTGG	3 cut(s)	201, 260, 481
BseYI	CCCAGC	1 cut(s)	4
BshFI	GGCC	4 cut(s)	194, 249, 443, 473
BsiHKAI	GWGCWC	1 cut(s)	359
BslI	CCNNNNNNNGG	1 cut(s)	733
BsmAI	GTCTC	4 cut(s)	136, 536, 623, 955
BsmBI	CGTCTC	1 cut(s)	955
BsmI	GAATGC	1 cut(s)	728
BsnI	GGCC	4 cut(s)	194, 249, 443, 473
Bsp1286I	GDGCHC	1 cut(s)	359
Bsp143I	GATC	5 cut(s)	100, 236, 362, 377, 945
BspACI	CCGC	1 cut(s)	800
BspANI	GGCC	4 cut(s)	194, 249, 443, 473
BspCNI	CTCAG	1 cut(s)	262
BspHI	TCATGA	1 cut(s)	891
BspPI	GGATC	4 cut(s)	244, 370, 385, 953
BspQI	GCTCTTC	1 cut(s)	347
BsrDI	GCAATG	3 cut(s)	749, 768, 832
BsrI	ACTGG	3 cut(s)	201, 260, 481
BssECI	CCNNGG	3 cut(s)	114, 530, 571
BssMI	GATC	5 cut(s)	100, 236, 362, 377, 945
BssT1I	CCWWGG	2 cut(s)	114, 530
Bst2UI	CCWGG	1 cut(s)	731
Bst4CI	ACNGT	2 cut(s)	794, 911
Bst6I	CTCTTC	4 cut(s)	72, 87, 347, 534
BstC8I	GCNNGC	2 cut(s)	638, 823
BstDEI	CTNAG	2 cut(s)	270, 689
BstENI	CCTNNNNNAGG	1 cut(s)	731
BstF5I	GGATG	7 cut(s)	76, 317, 620, 742, 793, 851, 856
BstKTI	GATC	5 cut(s)	103, 239, 365, 380, 948
BstMAI	GTCTC	4 cut(s)	136, 536, 623, 955
BstMBI	GATC	5 cut(s)	100, 236, 362, 377, 945
BstNI	CCWGG	1 cut(s)	731
BstNSI	RCATGY	2 cut(s)	666, 825
BstSCI	CCNGG	1 cut(s)	729
BstX2I	RGATCY	1 cut(s)	236
BstYI	RGATCY	1 cut(s)	236
BsuRI	GGCC	4 cut(s)	194, 249, 443, 473
BtsCI	GGATG	7 cut(s)	76, 317, 620, 742, 793, 851, 856
BtsIMutI	CAGTG	1 cut(s)	474
Cac8I	GCNNGC	2 cut(s)	638, 823
CaiI	CAGNNNCTG	1 cut(s)	511
CciI	TCATGA	1 cut(s)	891
Cfr13I	GGNCC	1 cut(s)	248
CseI	GACGC	1 cut(s)	1004
CviAII	CATG	4 cut(s)	439, 663, 822, 892
DdeI	CTNAG	2 cut(s)	270, 689
DpnI	GATC	5 cut(s)	102, 238, 364, 379, 947
DpnII	GATC	5 cut(s)	100, 236, 362, 377, 945
EaeI	YGGCCR	3 cut(s)	192, 441, 471
Eam1104I	CTCTTC	4 cut(s)	72, 87, 347, 534
EarI	CTCTTC	4 cut(s)	72, 87, 347, 534
Ecl136II	GAGCTC	1 cut(s)	357
Eco130I	CCWWGG	2 cut(s)	114, 530
Eco24I	GRGCYC	1 cut(s)	359
Eco53kI	GAGCTC	1 cut(s)	357
Eco57I	CTGAAG	1 cut(s)	960
EcoICRI	GAGCTC	1 cut(s)	357
EcoNI	CCTNNNNNAGG	1 cut(s)	731
EcoRI	GAATTC	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	729
EcoT14I	CCWWGG	2 cut(s)	114, 530
EcoT38I	GRGCYC	1 cut(s)	359
ErhI	CCWWGG	2 cut(s)	114, 530
Esp3I	CGTCTC	1 cut(s)	955
FaeI	CATG	4 cut(s)	442, 666, 825, 895
FalI	AAGNNNNNCTT	2 cut(s)	169, 201
FatI	CATG	4 cut(s)	438, 662, 821, 891
FauNDI	CATATG	1 cut(s)	601
FblI	GTMKAC	1 cut(s)	495
FokI	GGATG	7 cut(s)	83, 304, 627, 749, 800, 838, 843
FriOI	GRGCYC	1 cut(s)	359
GsaI	CCCAGC	1 cut(s)	8
GsuI	CTGGAG	3 cut(s)	184, 533, 752
HaeIII	GGCC	4 cut(s)	194, 249, 443, 473
HgaI	GACGC	1 cut(s)	1004
Hin1II	CATG	4 cut(s)	442, 666, 825, 895
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HinfI	GANTC	1 cut(s)	447
HphI	GGTGA	2 cut(s)	86, 842
Hpy166II	GTNNAC	1 cut(s)	496
Hpy188I	TCNGA	2 cut(s)	550, 572
Hpy188III	TCNNGA	5 cut(s)	281, 360, 785, 892, 978
Hpy8I	GTNNAC	1 cut(s)	496
Hpy99I	CGWCG	3 cut(s)	44, 497, 528
HpyAV	CCTTC	1 cut(s)	80
HpyCH4III	ACNGT	2 cut(s)	794, 911
HpyCH4IV	ACGT	1 cut(s)	705
HpyCH4V	TGCA	6 cut(s)	658, 749, 754, 761, 825, 937
HpyF3I	CTNAG	2 cut(s)	270, 689
HpySE526I	ACGT	1 cut(s)	705
Hsp92II	CATG	4 cut(s)	442, 666, 825, 895
Kzo9I	GATC	5 cut(s)	100, 236, 362, 377, 945
LguI	GCTCTTC	1 cut(s)	347
LmnI	GCTCC	1 cut(s)	222
LweI	GCATC	1 cut(s)	924
MaeII	ACGT	1 cut(s)	705
MaeIII	GTNAC	3 cut(s)	680, 830, 874
MalI	GATC	5 cut(s)	102, 238, 364, 379, 947
MboI	GATC	5 cut(s)	100, 236, 362, 377, 945
MflI	RGATCY	1 cut(s)	236
MhlI	GDGCHC	1 cut(s)	359
MlsI	TGGCCA	3 cut(s)	194, 443, 473
MluNI	TGGCCA	3 cut(s)	194, 443, 473
MlyI	GAGTC	1 cut(s)	441
Mox20I	TGGCCA	3 cut(s)	194, 443, 473
MscI	TGGCCA	3 cut(s)	194, 443, 473
MseI	TTAA	4 cut(s)	558, 594, 711, 960
Msp20I	TGGCCA	3 cut(s)	194, 443, 473
MspR9I	CCNGG	1 cut(s)	731
Mva1269I	GAATGC	1 cut(s)	728
MvaI	CCWGG	1 cut(s)	731
NdeI	CATATG	1 cut(s)	601
NdeII	GATC	5 cut(s)	100, 236, 362, 377, 945
NlaIII	CATG	4 cut(s)	442, 666, 825, 895
NmuCI	GTSAC	2 cut(s)	680, 830
NspI	RCATGY	2 cut(s)	666, 825
PaeI	GCATGC	1 cut(s)	825
PagI	TCATGA	1 cut(s)	891
PciSI	GCTCTTC	1 cut(s)	347
PctI	GAATGC	1 cut(s)	728
PfoI	TCCNGGA	1 cut(s)	729
PleI	GAGTC	1 cut(s)	441
PpsI	GAGTC	1 cut(s)	441
Psp124BI	GAGCTC	1 cut(s)	359
Psp1406I	AACGTT	1 cut(s)	705
Psp6I	CCWGG	1 cut(s)	729
PspFI	CCCAGC	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	729
PspPI	GGNCC	1 cut(s)	248
PstNI	CAGNNNCTG	1 cut(s)	511
PsuI	RGATCY	1 cut(s)	236
SacI	GAGCTC	1 cut(s)	359
SalI	GTCGAC	1 cut(s)	494
SapI	GCTCTTC	1 cut(s)	347
SaqAI	TTAA	4 cut(s)	558, 594, 711, 960
Sau3AI	GATC	5 cut(s)	100, 236, 362, 377, 945
Sau96I	GGNCC	1 cut(s)	248
SchI	GAGTC	1 cut(s)	441
ScrFI	CCNGG	1 cut(s)	731
SduI	GDGCHC	1 cut(s)	359
SfaNI	GCATC	1 cut(s)	924
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
SphI	GCATGC	1 cut(s)	825
SsiI	CCGC	1 cut(s)	800
SstI	GAGCTC	1 cut(s)	359
StyD4I	CCNGG	1 cut(s)	729
StyI	CCWWGG	2 cut(s)	114, 530
TaaI	ACNGT	2 cut(s)	794, 911
TaiI	ACGT	1 cut(s)	708
TaqI	TCGA	5 cut(s)	380, 392, 450, 495, 523
Tru1I	TTAA	4 cut(s)	558, 594, 711, 960
Tru9I	TTAA	4 cut(s)	558, 594, 711, 960
TscAI	CASTG	1 cut(s)	481
TseFI	GTSAC	2 cut(s)	680, 830
Tsp45I	GTSAC	2 cut(s)	680, 830
TspDTI	ATGAA	7 cut(s)	99, 427, 594, 729, 828, 885, 1012
TspGWI	ACGGA	1 cut(s)	1008
TspRI	CASTG	1 cut(s)	481
XagI	CCTNNNNNAGG	1 cut(s)	731
XapI	RAATTY	5 cut(s)	394, 401, 769, 842, 1034
XceI	RCATGY	2 cut(s)	666, 825
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XmiI	GTMKAC	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.