Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001304

Physical Location & Seq

Genomic Coordinates Reverse (-)

58507452 .. 58509845

Gene Structure 2394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030255

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGTCGAATTCTGAATTAGAGGACAAGATTTTCAGCTTGTTCAAGGATTTTATGGCTGGGTATATGCTTAGCTCTGCTAAGTTTCTTCGACAGCCGGCGATAGATAAAACATCTGAGTTGGTTAAAAATATAATCCAATCAAACGAAACAAAGAGGGTTAAATCATACATTGAAGCTGGATGTATCAACACTGATGATGGCAGGCACAATGTAACCAAGTTGCAATCATGCCGAATTGGACTTCATGACCATATATGTAAAGGAAAAGGTATACTTAACGAACTGGAATGCCTACTGGAAGATGCAAGTGGTGCAATGCAAGATAAATCTTTGTTCCACGATGACAATTTGGGTGAAAGGTTGAATAAACAAGCATGTATCAATGACAAGTGTGGAACACTGAAACTTGCTTCTTCCTTCCAATTCGATGTGAGGAACAATGGTTTAGAAGAAGGCTTATTCCTAATCCTTATAAAAGATGCAGAGAGCTATAGCTATCTTGATGATGCCGTCTCTGCACAGAAGCCACAGACTCCCAGAAAGGCCTTCCAAACCTGCCATCAAAGCCAACTTTCCAAACCCCAAGGCAAACACCTCCTCTTCCAATCTCAGCCCCGGGCTTTGAAGTGCCCATCCGGCAGTCAGCCAAGAGACGACGCGGCAAAGCCAGCGCTATCCATGGCCGCCGCCGGACAGGGAACAGTTTGTCGGAGAGGTTGTGCTCTCTCTTGCGGCGCTAGGGTTTCTCCAAAAAATGTTAATGAGTTGGATTGGGCAATGAGTTTCGATGTATTGGGAGTATCCGTATTTATAGAAGCTTTAATTTTCGTGCTTATCCTAATTGTTGGTTCAATTTATGCATGGCCAAAAGGAGCATTGGAATGGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

297

Amino Acids

32.61

Weight (kDa)

7.51

Isoelectric Point (pI)

49.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7795	PF25071	27 - 108	1.3e-33	Domain of unknown function (DUF7795)
Oxidored_q4	PF00507	257 - 295	7.4e-08	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49645 AT3G49645
fragaria_vesca	FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_2g13330 FvH4_2g13330 FvH4_2g13330
malus_domestica	MD00G1139600.v1.1 MD01G1046300.v1.1 MD04G1240700.v1.1 MD15G1405500.v1.1
prunus_persica	Prupe.6G211100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0109701 RchiOBHm_Chr5g0054161 RchiOBHm_Chr6g0274761
rosa_laevigata	RLG00000013524 RLG00000017757 RLG00000017758 RLG00000030253 RLG00000030255 RLG00000030257 RLG00000030259 RLG00000030260 RLG00000030262 RLG00000030263
rosa_multiflora	Rmu_sc0000507.1_g000008 Rmu_sc0000509.1_g000038 Rmu_sc0001938.1_g000001 Rmu_sc0002076.1_g000012 Rmu_sc0006223.1_g000006 Rmu_sc0006889.1_g000015
rosa_roxburghii	Rroxscaffold_2G00134010 Rroxscaffold_4G00326300 Rroxscaffold_4G00326330 Rroxscaffold_7G00193960
rosa_rugosa	Rorug02G0162000 Rorug06G0083900 Rorug06G0084000 Rorug06G0084100
rosa_samantha	Rh2AG214500 Rh2BG224800 Rh2CG216700 Rh2DG220000 Rh5AG354600 Rh6AG199700 Rh6BG203400 Rh6CG203600 Rh6DG195100
rosa_wichuraiana	Rw0G009640 Rw1G004950 Rw6G017370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	473
Acc36I	ACCTGC	1 cut(s)	563
AccI	GTMKAC	1 cut(s)	271
AccII	CGCG	1 cut(s)	659
AciI	CCGC	4 cut(s)	659, 684, 687, 732
AcoI	YGGCCR	2 cut(s)	681, 863
AcsI	RAATTY	1 cut(s)	7
AfeI	AGCGCT	1 cut(s)	672
AgsI	TTSAA	5 cut(s)	43, 173, 364, 625, 852
AluBI	AGCT	6 cut(s)	36, 72, 176, 489, 495, 818
AluI	AGCT	6 cut(s)	36, 72, 176, 489, 495, 818
Alw21I	GWGCWC	1 cut(s)	724
Alw26I	GTCTC	2 cut(s)	517, 645
Ama87I	CYCGRG	1 cut(s)	615
Aor51HI	AGCGCT	1 cut(s)	672
AoxI	GGCC	3 cut(s)	543, 681, 863
ApoI	RAATTY	1 cut(s)	7
AspLEI	GCGC	2 cut(s)	673, 737
AsuC2I	CCSGG	2 cut(s)	616, 617
AsuHPI	GGTGA	1 cut(s)	365
AvaI	CYCGRG	1 cut(s)	615
BaeGI	GKGCMC	1 cut(s)	632
BalI	TGGCCA	1 cut(s)	865
Bbv12I	GWGCWC	1 cut(s)	724
BccI	CCATC	3 cut(s)	191, 567, 640
BceAI	ACGGC	1 cut(s)	494
BciVI	GTATCC	1 cut(s)	811
BcnI	CCSGG	2 cut(s)	616, 617
BcoDI	GTCTC	2 cut(s)	517, 645
BfaI	CTAG	1 cut(s)	738
BfmI	CTRYAG	1 cut(s)	490
BfoI	RGCGCY	2 cut(s)	674, 738
BfuAI	ACCTGC	1 cut(s)	563
BfuI	GTATCC	1 cut(s)	811
BglI	GCCNNNNNGGC	1 cut(s)	636
BisI	GCNGC	4 cut(s)	660, 684, 687, 733
BlpI	GCTNAGC	1 cut(s)	68
BlsI	GCNGC	4 cut(s)	661, 685, 688, 734
Bme1390I	CCNGG	2 cut(s)	616, 617
BmeT110I	CYCGRG	1 cut(s)	615
BmrFI	CCNGG	2 cut(s)	616, 617
BmsI	GCATC	3 cut(s)	292, 469, 496
Bpu1102I	GCTNAGC	1 cut(s)	68
BpuMI	CCSGG	2 cut(s)	616, 617
BsaJI	CCNNGG	4 cut(s)	583, 614, 615, 678
BsaXI	ACNNNNNCTCC	4 cut(s)	703, 733, 789, 819
Bse118I	RCCGGY	1 cut(s)	94
Bse1I	ACTGG	2 cut(s)	288, 300
Bse3DI	GCAATG	2 cut(s)	321, 783
BseDI	CCNNGG	4 cut(s)	583, 614, 615, 678
BseGI	GGATG	2 cut(s)	185, 632
BseMI	GCAATG	2 cut(s)	321, 783
BseMII	CTCAG	2 cut(s)	105, 623
BseNI	ACTGG	2 cut(s)	288, 300
BseRI	GAGGAG	1 cut(s)	587
BseSI	GKGCMC	1 cut(s)	632
BseYI	CCCAGC	1 cut(s)	56
BsgI	GTGCAG	1 cut(s)	501
Bsh1236I	CGCG	1 cut(s)	659
BshFI	GGCC	3 cut(s)	545, 683, 865
BsiHKAI	GWGCWC	1 cut(s)	724
BsiHKCI	CYCGRG	1 cut(s)	615
BsiSI	CCGG	4 cut(s)	95, 616, 636, 690
BsmAI	GTCTC	2 cut(s)	517, 645
BsmBI	CGTCTC	2 cut(s)	517, 645
BsmI	GAATGC	1 cut(s)	293
BsnI	GGCC	3 cut(s)	545, 683, 865
BsoBI	CYCGRG	1 cut(s)	615
Bsp1286I	GDGCHC	2 cut(s)	632, 724
Bsp1720I	GCTNAGC	1 cut(s)	68
Bsp19I	CCATGG	1 cut(s)	678
BspACI	CCGC	4 cut(s)	659, 684, 687, 732
BspANI	GGCC	3 cut(s)	545, 683, 865
BspCNI	CTCAG	2 cut(s)	106, 622
BspFNI	CGCG	1 cut(s)	659
BspHI	TCATGA	1 cut(s)	244
BspMI	ACCTGC	1 cut(s)	563
BsrDI	GCAATG	2 cut(s)	321, 783
BsrFI	RCCGGY	1 cut(s)	94
BsrI	ACTGG	2 cut(s)	288, 300
BssAI	RCCGGY	1 cut(s)	94
BssECI	CCNNGG	4 cut(s)	583, 614, 615, 678
BssNAI	GTATAC	1 cut(s)	272
BssT1I	CCWWGG	2 cut(s)	583, 678
Bst1107I	GTATAC	1 cut(s)	272
Bst4CI	ACNGT	1 cut(s)	703
Bst6I	CTCTTC	1 cut(s)	605
BstAPI	GCANNNNNTGC	1 cut(s)	311
BstC8I	GCNNGC	3 cut(s)	96, 203, 669
BstDEI	CTNAG	5 cut(s)	68, 78, 114, 609, 888
BstDSI	CCRYGG	1 cut(s)	678
BstF5I	GGATG	2 cut(s)	185, 632
BstFNI	CGCG	1 cut(s)	659
BstH2I	RGCGCY	2 cut(s)	674, 738
BstHHI	GCGC	2 cut(s)	673, 737
BstMAI	GTCTC	2 cut(s)	517, 645
BstMWI	GCNNNNNNNGC	5 cut(s)	311, 515, 564, 636, 668
BstNSI	RCATGY	1 cut(s)	378
BstSCI	CCNGG	2 cut(s)	614, 615
BstSFI	CTRYAG	1 cut(s)	490
BstSLI	GKGCMC	1 cut(s)	632
BstUI	CGCG	1 cut(s)	659
BstZ17I	GTATAC	1 cut(s)	272
BsuI	GTATCC	1 cut(s)	811
BsuRI	GGCC	3 cut(s)	545, 683, 865
BtgI	CCRYGG	1 cut(s)	678
BtsCI	GGATG	2 cut(s)	185, 632
BtsIMutI	CAGTG	2 cut(s)	189, 398
BveI	ACCTGC	1 cut(s)	563
Cac8I	GCNNGC	3 cut(s)	96, 203, 669
CciI	TCATGA	1 cut(s)	244
CfoI	GCGC	2 cut(s)	673, 737
Cfr10I	RCCGGY	1 cut(s)	94
Cfr9I	CCCGGG	1 cut(s)	615
CseI	GACGC	1 cut(s)	665
CviAII	CATG	5 cut(s)	228, 245, 375, 679, 861
DdeI	CTNAG	5 cut(s)	68, 78, 114, 609, 888
EaeI	YGGCCR	2 cut(s)	681, 863
Eam1104I	CTCTTC	1 cut(s)	605
EarI	CTCTTC	1 cut(s)	605
Eco130I	CCWWGG	2 cut(s)	583, 678
Eco147I	AGGCCT	1 cut(s)	545
Eco47III	AGCGCT	1 cut(s)	672
Eco88I	CYCGRG	1 cut(s)	615
EcoRI	GAATTC	1 cut(s)	7
EcoT14I	CCWWGG	2 cut(s)	583, 678
EcoT22I	ATGCAT	1 cut(s)	862
ErhI	CCWWGG	2 cut(s)	583, 678
Esp3I	CGTCTC	2 cut(s)	517, 645
FaeI	CATG	5 cut(s)	231, 248, 378, 682, 864
FalI	AAGNNNNNCTT	2 cut(s)	258, 290
FatI	CATG	5 cut(s)	227, 244, 374, 678, 860
FblI	GTMKAC	1 cut(s)	271
Fnu4HI	GCNGC	4 cut(s)	660, 684, 687, 733
FokI	GGATG	2 cut(s)	192, 619
Fsp4HI	GCNGC	4 cut(s)	660, 684, 687, 733
FspBI	CTAG	1 cut(s)	738
GlaI	GCGC	2 cut(s)	672, 736
GluI	GCNGC	4 cut(s)	660, 684, 687, 733
GsaI	CCCAGC	1 cut(s)	60
HaeII	RGCGCY	2 cut(s)	674, 738
HaeIII	GGCC	3 cut(s)	545, 683, 865
HapII	CCGG	4 cut(s)	95, 616, 636, 690
HgaI	GACGC	1 cut(s)	665
HhaI	GCGC	2 cut(s)	673, 737
Hin1II	CATG	5 cut(s)	231, 248, 378, 682, 864
Hin6I	GCGC	2 cut(s)	671, 735
HinP1I	GCGC	2 cut(s)	671, 735
HindIII	AAGCTT	1 cut(s)	816
HinfI	GANTC	1 cut(s)	532
HpaII	CCGG	4 cut(s)	95, 616, 636, 690
HphI	GGTGA	1 cut(s)	365
Hpy166II	GTNNAC	1 cut(s)	272
Hpy188I	TCNGA	3 cut(s)	13, 115, 711
Hpy188III	TCNNGA	2 cut(s)	245, 500
Hpy8I	GTNNAC	1 cut(s)	272
Hpy99I	CGWCG	1 cut(s)	659
HpyAV	CCTTC	3 cut(s)	427, 446, 556
HpyCH4III	ACNGT	1 cut(s)	703
HpyCH4V	TGCA	7 cut(s)	223, 305, 314, 319, 482, 518, 860
HpyF10VI	GCNNNNNNNGC	5 cut(s)	311, 515, 564, 636, 668
HpyF3I	CTNAG	5 cut(s)	68, 78, 114, 609, 888
Hsp92II	CATG	5 cut(s)	231, 248, 378, 682, 864
HspAI	GCGC	2 cut(s)	671, 735
KroI	GCCGGC	1 cut(s)	94
KroNI	GCCGGC	1 cut(s)	96
LmnI	GCTCC	1 cut(s)	872
LweI	GCATC	3 cut(s)	292, 469, 496
MaeI	CTAG	1 cut(s)	738
MaeIII	GTNAC	1 cut(s)	211
MboII	GAAGA	5 cut(s)	77, 311, 405, 461, 592
MhlI	GDGCHC	2 cut(s)	632, 724
MlsI	TGGCCA	1 cut(s)	865
MluCI	AATT	8 cut(s)	7, 14, 234, 346, 422, 822, 840, 852
MluNI	TGGCCA	1 cut(s)	865
MlyI	GAGTC	1 cut(s)	526
MmeI	TCCRAC	2 cut(s)	689, 747
MnlI	CCTC	6 cut(s)	13, 147, 426, 605, 608, 707
Mox20I	TGGCCA	1 cut(s)	865
Mph1103I	ATGCAT	1 cut(s)	862
MroNI	GCCGGC	1 cut(s)	94
MscI	TGGCCA	1 cut(s)	865
MseI	TTAA	5 cut(s)	123, 159, 276, 759, 821
MslI	CAYNNNNRTG	1 cut(s)	880
Msp20I	TGGCCA	1 cut(s)	865
MspI	CCGG	4 cut(s)	95, 616, 636, 690
MspR9I	CCNGG	2 cut(s)	616, 617
Mva1269I	GAATGC	1 cut(s)	293
MvnI	CGCG	1 cut(s)	659
MwoI	GCNNNNNNNGC	5 cut(s)	311, 515, 564, 636, 668
NaeI	GCCGGC	1 cut(s)	96
NciI	CCSGG	2 cut(s)	616, 617
NcoI	CCATGG	1 cut(s)	678
NgoMIV	GCCGGC	1 cut(s)	94
NlaIII	CATG	5 cut(s)	231, 248, 378, 682, 864
NsiI	ATGCAT	1 cut(s)	862
NspI	RCATGY	1 cut(s)	378
PagI	TCATGA	1 cut(s)	244
PceI	AGGCCT	1 cut(s)	545
PctI	GAATGC	1 cut(s)	293
PdiI	GCCGGC	1 cut(s)	96
PkrI	GCNGC	4 cut(s)	661, 685, 688, 734
PleI	GAGTC	1 cut(s)	526
PpsI	GAGTC	1 cut(s)	526
PsiI	TTATAA	1 cut(s)	473
PspFI	CCCAGC	1 cut(s)	56
RseI	CAYNNNNRTG	1 cut(s)	880
SaqAI	TTAA	5 cut(s)	123, 159, 276, 759, 821
SatI	GCNGC	4 cut(s)	660, 684, 687, 733
SchI	GAGTC	1 cut(s)	526
ScrFI	CCNGG	2 cut(s)	616, 617
SduI	GDGCHC	2 cut(s)	632, 724
SfaNI	GCATC	3 cut(s)	292, 469, 496
SfcI	CTRYAG	1 cut(s)	490
SmaI	CCCGGG	1 cut(s)	617
SmiMI	CAYNNNNRTG	1 cut(s)	880
Sse9I	AATT	8 cut(s)	7, 14, 234, 346, 422, 822, 840, 852
SseBI	AGGCCT	1 cut(s)	545
SsiI	CCGC	4 cut(s)	659, 684, 687, 732
SspMI	CTAG	1 cut(s)	738
StuI	AGGCCT	1 cut(s)	545
StyD4I	CCNGG	2 cut(s)	614, 615
StyI	CCWWGG	2 cut(s)	583, 678
TaaI	ACNGT	1 cut(s)	703
TaqI	TCGA	4 cut(s)	5, 88, 426, 786
TasI	AATT	8 cut(s)	7, 14, 234, 346, 422, 822, 840, 852
TauI	GCSGC	4 cut(s)	662, 686, 689, 735
Tru1I	TTAA	5 cut(s)	123, 159, 276, 759, 821
Tru9I	TTAA	5 cut(s)	123, 159, 276, 759, 821
TscAI	CASTG	2 cut(s)	196, 405
TspDTI	ATGAA	1 cut(s)	233
TspGWI	ACGGA	1 cut(s)	793
TspMI	CCCGGG	1 cut(s)	615
TspRI	CASTG	2 cut(s)	196, 405
XapI	RAATTY	1 cut(s)	7
XceI	RCATGY	1 cut(s)	378
XmaI	CCCGGG	1 cut(s)	615
XmiI	GTMKAC	1 cut(s)	271
XspI	CTAG	1 cut(s)	738
Zsp2I	ATGCAT	1 cut(s)	862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.